Wall clock time and date at job start Mon Mar 30 2020 03:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00110 * 2 1 4 4 H 1.08998 * 110.35172 * 327.14001 * 3 2 1 5 5 C 1.54593 * 110.30622 * 89.28342 * 3 2 1 6 6 C 1.54947 * 102.91868 * 140.87299 * 5 3 2 7 7 N 1.48531 * 103.22515 * 322.58228 * 6 5 3 8 8 C 1.46904 * 110.99353 * 159.71973 * 7 6 5 9 9 H 1.09006 * 109.46745 * 190.89667 * 8 7 6 10 10 C 1.52996 * 109.47475 * 310.89856 * 8 7 6 11 11 C 1.53005 * 109.47062 * 70.90303 * 8 7 6 12 12 C 1.50700 * 109.47049 * 64.99648 * 11 8 7 13 13 H 1.07993 * 120.00116 * 359.97438 * 12 11 8 14 14 C 1.37877 * 119.99489 * 180.02562 * 12 11 8 15 15 N 1.31515 * 119.99990 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00381 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46889 * 270.00386 * 16 14 12 18 18 H 1.48498 * 109.46725 * 30.00302 * 16 14 12 19 19 H 1.48495 * 109.47021 * 150.00291 * 16 14 12 20 20 C 1.47895 * 105.82148 * 39.21080 * 7 6 5 21 21 H 1.09007 * 109.47007 * 59.99925 * 1 2 3 22 22 H 1.08999 * 109.47276 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47381 * 300.00125 * 1 2 3 24 24 H 1.00906 * 111.00074 * 236.04477 * 2 1 3 25 25 H 1.09002 * 110.72530 * 259.22937 * 5 3 2 26 26 H 1.08999 * 110.72450 * 22.34126 * 5 3 2 27 27 H 1.09003 * 110.66320 * 204.15287 * 6 5 3 28 28 H 1.08995 * 110.66684 * 81.02234 * 6 5 3 29 29 H 1.08994 * 109.47013 * 67.54693 * 10 8 7 30 30 H 1.09004 * 109.47037 * 187.54675 * 10 8 7 31 31 H 1.08997 * 109.47177 * 307.54325 * 10 8 7 32 32 H 1.08997 * 109.46599 * 304.99523 * 11 8 7 33 33 H 1.09002 * 109.46792 * 184.99871 * 11 8 7 34 34 H 0.96997 * 120.00177 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.92232 * 94.01892 * 20 7 6 36 36 H 1.09002 * 109.91881 * 215.11434 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3299 2.0330 -0.5545 5 6 2.1708 1.8788 1.4497 6 6 3.4983 2.6749 1.3800 7 7 4.3290 1.8694 0.4488 8 6 5.4173 2.6769 -0.1183 9 1 5.8889 2.1292 -0.9343 10 6 4.8509 3.9953 -0.6493 11 6 6.4554 2.9682 0.9673 12 6 7.1015 1.6785 1.4035 13 1 6.8014 0.7445 0.9520 14 6 8.0749 1.6909 2.3798 15 7 8.6391 0.5655 2.7602 16 14 8.5934 3.3064 3.1614 17 1 9.7147 3.8943 2.3853 18 1 7.4446 4.2474 3.1615 19 1 9.0331 3.0618 4.5585 20 6 3.4090 1.4013 -0.6103 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8306 -0.5262 -0.7814 25 1 1.3444 2.5308 1.7328 26 1 2.2555 1.0424 2.1435 27 1 3.9658 2.7300 2.3631 28 1 3.3273 3.6733 0.9775 29 1 4.4996 4.6020 0.1852 30 1 5.6300 4.5346 -1.1881 31 1 4.0197 3.7883 -1.3234 32 1 5.9662 3.4366 1.8213 33 1 7.2167 3.6402 0.5710 34 1 9.3242 0.5743 3.4468 35 1 3.4342 2.0896 -1.4551 36 1 3.6967 0.4020 -0.9372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695787196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:12 Heat of formation + Delta-G solvation = 11.088741 kcal Electronic energy + Delta-G solvation = -14800.251312 eV Core-core repulsion = 12512.419230 eV Total energy + Delta-G solvation = -2287.832082 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.18555 -35.87416 -33.10423 -31.77559 -28.97409 -27.97305 -27.58308 -24.29172 -23.11739 -21.48887 -20.16147 -18.72743 -16.51412 -15.91753 -15.65988 -15.09617 -14.33802 -14.05195 -13.79521 -13.33866 -12.97824 -12.42679 -12.36961 -12.02598 -11.80235 -11.65052 -11.42059 -11.08920 -10.88838 -10.70527 -10.68015 -10.38643 -10.17561 -9.61642 -9.48660 -8.99679 -8.40476 -8.37632 -7.53566 -5.85917 -3.79813 3.38454 3.46243 3.48853 4.25984 4.57786 4.58758 4.84706 5.11074 5.30979 5.36612 5.42891 5.47744 5.55938 5.71579 5.76310 5.77804 5.81395 5.92239 5.96372 6.08335 6.14902 6.35431 6.47677 6.50732 6.64533 6.81985 7.10382 7.13768 7.37819 7.40458 7.67868 7.84507 8.00235 8.77336 9.27178 9.76891 11.28259 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041001 B = 0.007900 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.750046 B = 3543.296449 C = 3781.258802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.682 5.682 3 C 0.077 3.923 4 H 0.043 0.957 5 C -0.112 4.112 6 C 0.032 3.968 7 N -0.478 5.478 8 C 0.085 3.915 9 H 0.074 0.926 10 C -0.188 4.188 11 C -0.004 4.004 12 C -0.490 4.490 13 H 0.079 0.921 14 C 0.061 3.939 15 N -0.908 5.908 16 Si 0.873 3.127 17 H -0.280 1.280 18 H -0.269 1.269 19 H -0.290 1.290 20 C 0.030 3.970 21 H 0.016 0.984 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.342 0.658 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.016 0.984 33 H 0.012 0.988 34 H 0.259 0.741 35 H 0.040 0.960 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.393 4.163 -6.465 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.313 5.313 3 C -0.033 4.033 4 H 0.061 0.939 5 C -0.151 4.151 6 C -0.096 4.096 7 N -0.201 5.201 8 C -0.024 4.024 9 H 0.093 0.907 10 C -0.247 4.247 11 C -0.041 4.041 12 C -0.528 4.528 13 H 0.097 0.903 14 C -0.138 4.138 15 N -0.548 5.548 16 Si 0.701 3.299 17 H -0.206 1.206 18 H -0.194 1.194 19 H -0.216 1.216 20 C -0.098 4.098 21 H 0.035 0.965 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.160 0.840 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.954 3.576 -5.399 15.384 hybrid contribution -0.182 1.805 -0.877 2.015 sum -14.137 5.381 -6.276 16.377 Atomic orbital electron populations 1.22217 0.88375 1.01520 0.99994 1.60501 1.07059 1.13722 1.50053 1.22431 0.94966 0.88833 0.97074 0.93925 1.22561 0.96425 0.99837 0.96244 1.23290 0.92548 0.94891 0.98894 1.64949 1.07492 1.35091 1.12566 1.21843 0.92457 0.90049 0.98028 0.90749 1.22574 1.00832 1.00555 1.00720 1.19613 0.93148 0.97874 0.93466 1.21059 1.18180 0.93449 1.20107 0.90320 1.25012 0.96434 0.95609 0.96773 1.69914 1.27636 1.25793 1.31494 0.86897 0.79042 0.85227 0.78740 1.20636 1.19359 1.21609 1.23092 0.91156 1.01106 0.94477 0.96517 0.91634 0.91869 0.83985 0.92418 0.89577 0.89670 0.93933 0.92540 0.92519 0.93701 0.96582 0.96951 0.93106 0.94174 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.55 60.06 0.63 0.93 16 2 N -0.68 -8.80 6.65 -112.56 -0.75 -9.55 16 3 C 0.08 1.07 3.33 -66.35 -0.22 0.85 16 4 H 0.04 0.54 7.82 -51.93 -0.41 0.14 16 5 C -0.11 -1.67 6.76 -24.87 -0.17 -1.84 16 6 C 0.03 0.55 5.56 -1.89 -0.01 0.54 16 7 N -0.48 -9.27 4.96 -222.49 -1.10 -10.37 16 8 C 0.08 1.70 2.22 -67.71 -0.15 1.55 16 9 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 10 C -0.19 -3.05 8.18 37.16 0.30 -2.75 16 11 C 0.00 -0.08 3.52 -27.88 -0.10 -0.18 16 12 C -0.49 -14.19 9.39 -34.44 -0.32 -14.52 16 13 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 14 C 0.06 1.82 5.47 -17.82 -0.10 1.73 16 15 N -0.91 -28.82 13.96 55.43 0.77 -28.05 16 16 Si 0.87 22.23 27.47 -169.99 -4.67 17.56 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 20 C 0.03 0.48 6.13 -2.76 -0.02 0.46 16 21 H 0.02 0.15 8.07 -51.93 -0.42 -0.26 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.34 4.03 8.10 -39.29 -0.32 3.71 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.09 1.43 8.06 -51.93 -0.42 1.01 16 27 H 0.08 1.64 7.65 -51.93 -0.40 1.24 16 28 H 0.04 0.68 5.46 -51.93 -0.28 0.40 16 29 H 0.06 0.90 6.40 -51.93 -0.33 0.57 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.65 6.28 -51.93 -0.33 0.32 16 32 H 0.02 0.39 6.15 -51.93 -0.32 0.07 16 33 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.04 0.59 6.01 -51.93 -0.31 0.27 16 36 H 0.08 1.26 7.48 -51.93 -0.39 0.87 16 LS Contribution 276.90 15.07 4.17 4.17 Total: -1.00 -31.50 276.90 -7.73 -39.23 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.01 Total: 0.24 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.15 Total: -13.23 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -1.08 Total: -47.97 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.50 -7.73 -39.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.318 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds