Wall clock time and date at job start Mon Mar 30 2020 03:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00110 * 2 1 4 4 H 1.08998 * 110.35172 * 327.14001 * 3 2 1 5 5 C 1.54593 * 110.30622 * 89.28342 * 3 2 1 6 6 C 1.54947 * 102.91868 * 140.87299 * 5 3 2 7 7 N 1.48531 * 103.22515 * 322.58228 * 6 5 3 8 8 C 1.46904 * 110.99353 * 159.71973 * 7 6 5 9 9 H 1.09006 * 109.46745 * 190.89667 * 8 7 6 10 10 C 1.52996 * 109.47475 * 310.89856 * 8 7 6 11 11 C 1.53005 * 109.47062 * 70.90303 * 8 7 6 12 12 C 1.50700 * 109.47049 * 64.99648 * 11 8 7 13 13 H 1.07993 * 120.00116 * 359.97438 * 12 11 8 14 14 C 1.37877 * 119.99489 * 180.02562 * 12 11 8 15 15 N 1.31515 * 119.99990 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00381 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46889 * 270.00386 * 16 14 12 18 18 H 1.48498 * 109.46725 * 30.00302 * 16 14 12 19 19 H 1.48495 * 109.47021 * 150.00291 * 16 14 12 20 20 C 1.47895 * 105.82148 * 39.21080 * 7 6 5 21 21 H 1.09007 * 109.47007 * 59.99925 * 1 2 3 22 22 H 1.08999 * 109.47276 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47381 * 300.00125 * 1 2 3 24 24 H 1.00906 * 111.00074 * 236.04477 * 2 1 3 25 25 H 1.09002 * 110.72530 * 259.22937 * 5 3 2 26 26 H 1.08999 * 110.72450 * 22.34126 * 5 3 2 27 27 H 1.09003 * 110.66320 * 204.15287 * 6 5 3 28 28 H 1.08995 * 110.66684 * 81.02234 * 6 5 3 29 29 H 1.08994 * 109.47013 * 67.54693 * 10 8 7 30 30 H 1.09004 * 109.47037 * 187.54675 * 10 8 7 31 31 H 1.08997 * 109.47177 * 307.54325 * 10 8 7 32 32 H 1.08997 * 109.46599 * 304.99523 * 11 8 7 33 33 H 1.09002 * 109.46792 * 184.99871 * 11 8 7 34 34 H 0.96997 * 120.00177 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.92232 * 94.01892 * 20 7 6 36 36 H 1.09002 * 109.91881 * 215.11434 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3299 2.0330 -0.5545 5 6 2.1708 1.8788 1.4497 6 6 3.4983 2.6749 1.3800 7 7 4.3290 1.8694 0.4488 8 6 5.4173 2.6769 -0.1183 9 1 5.8889 2.1292 -0.9343 10 6 4.8509 3.9953 -0.6493 11 6 6.4554 2.9682 0.9673 12 6 7.1015 1.6785 1.4035 13 1 6.8014 0.7445 0.9520 14 6 8.0749 1.6909 2.3798 15 7 8.6391 0.5655 2.7602 16 14 8.5934 3.3064 3.1614 17 1 9.7147 3.8943 2.3853 18 1 7.4446 4.2474 3.1615 19 1 9.0331 3.0618 4.5585 20 6 3.4090 1.4013 -0.6103 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8306 -0.5262 -0.7814 25 1 1.3444 2.5308 1.7328 26 1 2.2555 1.0424 2.1435 27 1 3.9658 2.7300 2.3631 28 1 3.3273 3.6733 0.9775 29 1 4.4996 4.6020 0.1852 30 1 5.6300 4.5346 -1.1881 31 1 4.0197 3.7883 -1.3234 32 1 5.9662 3.4366 1.8213 33 1 7.2167 3.6402 0.5710 34 1 9.3242 0.5743 3.4468 35 1 3.4342 2.0896 -1.4551 36 1 3.6967 0.4020 -0.9372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695787196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:12 Heat of formation + Delta-G solvation = -13.027692 kcal Electronic energy + Delta-G solvation = -14801.297079 eV Core-core repulsion = 12512.419230 eV Total energy + Delta-G solvation = -2288.877849 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.50446 -37.11976 -34.93352 -33.49682 -30.51353 -29.49050 -28.89105 -25.35649 -24.79330 -23.14147 -21.31632 -20.26317 -18.76696 -17.24284 -16.78099 -16.36700 -16.17150 -15.32674 -15.03808 -14.89738 -14.30010 -14.17656 -13.79880 -13.60643 -13.26475 -12.87589 -12.66429 -12.57502 -12.44179 -12.10971 -11.96387 -11.82650 -11.68779 -11.57604 -11.30599 -11.10711 -10.67219 -9.35800 -8.91848 -8.16773 -6.16062 1.36604 1.39209 1.50178 2.42585 3.12720 3.25650 3.34274 3.67137 3.89538 4.16654 4.24534 4.35954 4.46614 4.50991 4.55294 4.59001 4.64580 4.76068 4.88255 4.91049 4.99670 5.06091 5.11835 5.13257 5.18227 5.25258 5.36620 5.56563 5.76239 6.13278 6.29952 6.36964 6.48277 6.55424 6.92074 7.44404 9.01068 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041001 B = 0.007900 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.750046 B = 3543.296449 C = 3781.258802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.701 5.701 3 C 0.087 3.913 4 H 0.066 0.934 5 C -0.106 4.106 6 C 0.032 3.968 7 N -0.518 5.518 8 C 0.087 3.913 9 H 0.058 0.942 10 C -0.176 4.176 11 C -0.001 4.001 12 C -0.492 4.492 13 H 0.031 0.969 14 C -0.005 4.005 15 N -0.960 5.960 16 Si 0.947 3.053 17 H -0.267 1.267 18 H -0.249 1.249 19 H -0.289 1.289 20 C 0.033 3.967 21 H 0.031 0.969 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.346 0.654 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.016 0.984 33 H 0.020 0.980 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.070 6.501 -7.174 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.334 5.334 3 C -0.023 4.023 4 H 0.084 0.916 5 C -0.145 4.145 6 C -0.096 4.096 7 N -0.242 5.242 8 C -0.022 4.022 9 H 0.076 0.924 10 C -0.234 4.234 11 C -0.038 4.038 12 C -0.530 4.530 13 H 0.049 0.951 14 C -0.200 4.200 15 N -0.602 5.602 16 Si 0.771 3.229 17 H -0.193 1.193 18 H -0.173 1.173 19 H -0.215 1.215 20 C -0.096 4.096 21 H 0.049 0.951 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.165 0.835 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.656 5.920 -6.131 17.826 hybrid contribution 0.319 0.941 -0.686 1.208 sum -15.337 6.861 -6.817 18.133 Atomic orbital electron populations 1.22254 0.86589 1.02472 1.00586 1.60465 1.08870 1.13361 1.50686 1.22329 0.94063 0.89834 0.96086 0.91589 1.22508 0.96074 0.99213 0.96703 1.23268 0.93059 0.96156 0.97105 1.64785 1.08817 1.36063 1.14497 1.21632 0.92188 0.92290 0.96087 0.92416 1.22415 1.01742 0.98005 1.01269 1.19553 0.94212 0.95179 0.94866 1.21306 1.18170 0.93952 1.19594 0.95063 1.25992 0.96618 0.99789 0.97599 1.70094 1.28775 1.28694 1.32647 0.85711 0.79386 0.80303 0.77483 1.19267 1.17276 1.21519 1.23090 0.91660 1.00670 0.94141 0.95066 0.90642 0.91942 0.83479 0.89635 0.92038 0.92636 0.91821 0.91959 0.91478 0.91424 0.96549 0.96175 0.93046 0.92445 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.55 127.69 1.35 1.89 16 2 N -0.70 -16.96 6.65 -510.03 -3.39 -20.35 16 3 C 0.09 2.20 3.33 45.79 0.15 2.36 16 4 H 0.07 1.40 7.82 -2.39 -0.02 1.38 16 5 C -0.11 -3.00 6.76 31.80 0.21 -2.78 16 6 C 0.03 1.07 5.56 86.65 0.48 1.55 16 7 N -0.52 -19.95 4.96 -857.83 -4.25 -24.20 16 8 C 0.09 3.42 2.22 44.92 0.10 3.52 16 9 H 0.06 2.41 8.10 -2.38 -0.02 2.40 16 10 C -0.18 -5.15 8.18 71.98 0.59 -4.56 16 11 C 0.00 -0.03 3.52 29.85 0.11 0.08 16 12 C -0.49 -29.39 9.39 25.60 0.24 -29.15 16 13 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 14 C -0.01 -0.33 5.47 84.65 0.46 0.14 16 15 N -0.96 -62.97 13.96 21.45 0.30 -62.67 16 16 Si 0.95 45.99 27.47 68.60 1.88 47.87 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.25 -11.21 6.54 99.48 0.65 -10.55 16 19 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 20 C 0.03 0.99 6.13 86.45 0.53 1.52 16 21 H 0.03 0.48 8.07 -2.38 -0.02 0.46 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.35 7.75 8.10 -89.69 -0.73 7.02 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 2.03 8.06 -2.39 -0.02 2.01 16 27 H 0.06 2.15 7.65 -2.39 -0.02 2.13 16 28 H 0.06 1.85 5.46 -2.39 -0.01 1.83 16 29 H 0.06 1.76 6.40 -2.39 -0.02 1.75 16 30 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.07 1.68 6.28 -2.39 -0.01 1.67 16 32 H 0.02 0.78 6.15 -2.39 -0.01 0.76 16 33 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 34 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 35 H 0.06 1.52 6.01 -2.39 -0.01 1.51 16 36 H 0.07 2.12 7.48 -2.39 -0.02 2.10 16 Total: -1.00 -70.00 276.90 -0.97 -70.97 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.26 Total: 13.83 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 4.22 Total: -25.44 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -7.34 Total: -107.22 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.87 kcal Total: -70.00 -0.97 -70.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.941 kcal (2) G-P(sol) polarization free energy of solvation -69.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds