Wall clock time and date at job start Mon Mar 30 2020 03:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46895 * 111.00483 * 2 1 4 4 H 1.09005 * 110.26780 * 34.29939 * 3 2 1 5 5 C 1.54589 * 110.31210 * 272.20991 * 3 2 1 6 6 C 1.55101 * 102.84952 * 219.18285 * 5 3 2 7 7 N 1.48536 * 103.28127 * 37.30441 * 6 5 3 8 8 C 1.46900 * 110.99954 * 200.33675 * 7 6 5 9 9 H 1.08999 * 109.47373 * 58.23394 * 8 7 6 10 10 C 1.53000 * 109.47503 * 178.23451 * 8 7 6 11 11 C 1.53006 * 109.46779 * 298.23346 * 8 7 6 12 12 C 1.50706 * 109.46697 * 174.54397 * 11 8 7 13 13 H 1.07998 * 120.00399 * 4.18398 * 12 11 8 14 14 C 1.37874 * 119.99442 * 184.19045 * 12 11 8 15 15 N 1.31523 * 120.00014 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00462 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46635 * 90.00381 * 16 14 12 18 18 H 1.48499 * 109.47245 * 210.00451 * 16 14 12 19 19 H 1.48502 * 109.46871 * 330.00509 * 16 14 12 20 20 C 1.47906 * 105.82047 * 320.84539 * 7 6 5 21 21 H 1.08999 * 109.47734 * 300.00056 * 1 2 3 22 22 H 1.09002 * 109.47074 * 59.99902 * 1 2 3 23 23 H 1.09001 * 109.47436 * 179.97438 * 1 2 3 24 24 H 1.00905 * 111.00640 * 236.04387 * 2 1 3 25 25 H 1.09006 * 110.72361 * 337.48044 * 5 3 2 26 26 H 1.09001 * 110.72746 * 100.76434 * 5 3 2 27 27 H 1.09002 * 110.59073 * 278.87624 * 6 5 3 28 28 H 1.08997 * 110.83351 * 155.84710 * 6 5 3 29 29 H 1.08994 * 109.47568 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.46977 * 299.99970 * 10 8 7 31 31 H 1.08999 * 109.46852 * 59.99625 * 10 8 7 32 32 H 1.08988 * 109.47178 * 294.54181 * 11 8 7 33 33 H 1.08994 * 109.46732 * 54.54685 * 11 8 7 34 34 H 0.96998 * 120.00373 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.92077 * 265.97948 * 20 7 6 36 36 H 1.09007 * 110.07841 * 144.77606 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3422 2.0266 0.5762 5 6 2.1356 1.8923 -1.4487 6 6 3.4668 2.6870 -1.4022 7 7 4.3184 1.8735 -0.4970 8 6 5.4192 2.6761 0.0525 9 1 5.0116 3.5321 0.5902 10 6 6.2466 1.8181 1.0118 11 6 6.3108 3.1684 -1.0894 12 6 7.3607 4.1001 -0.5410 13 1 7.4320 4.2665 0.5237 14 6 8.2300 4.7401 -1.3986 15 7 9.1467 5.5529 -0.9201 16 14 8.1070 4.4519 -3.2401 17 1 7.1794 5.4468 -3.8359 18 1 9.4509 4.5978 -3.8549 19 1 7.5929 3.0819 -3.4934 20 6 3.4224 1.3961 0.5786 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8306 -0.5262 -0.7813 25 1 2.2065 1.0625 -2.1519 26 1 1.3027 2.5469 -1.7055 27 1 3.3051 3.6818 -0.9872 28 1 3.9136 2.7533 -2.3942 29 1 7.0636 2.4134 1.4192 30 1 5.6114 1.4673 1.8253 31 1 6.6542 0.9620 0.4741 32 1 6.7947 2.3159 -1.5659 33 1 5.7025 3.6977 -1.8228 34 1 9.7585 6.0029 -1.5234 35 1 3.4667 2.0771 1.4284 36 1 3.7139 0.3932 0.8909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695787200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:14 Heat of formation + Delta-G solvation = -22.339309 kcal Electronic energy + Delta-G solvation = -14620.639043 eV Core-core repulsion = 12331.357412 eV Total energy + Delta-G solvation = -2289.281631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40781 -37.18984 -35.09307 -33.62399 -30.72539 -29.45013 -28.63163 -25.65706 -24.55692 -22.81583 -21.49135 -20.67309 -19.08929 -17.20114 -16.92212 -16.28929 -15.79687 -15.50642 -15.14564 -14.75765 -14.30891 -14.03661 -13.91731 -13.52752 -13.17833 -12.96792 -12.94508 -12.61694 -12.58431 -12.30724 -11.96720 -11.85359 -11.73472 -11.66333 -11.35747 -11.19863 -10.74788 -9.34387 -9.27225 -8.28476 -6.31303 1.33650 1.36584 1.49274 2.36145 3.05988 3.08886 3.29933 3.70794 3.77622 4.14639 4.28237 4.32393 4.36613 4.52090 4.62431 4.63755 4.68431 4.74134 4.91520 4.93182 5.01621 5.04675 5.08068 5.11432 5.17891 5.24290 5.34278 5.50010 5.65595 6.04607 6.10412 6.20917 6.33980 6.48372 6.75652 7.32673 8.88000 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052751 B = 0.007052 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.671392 B = 3969.357949 C = 4311.677480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.085 3.915 4 H 0.087 0.913 5 C -0.138 4.138 6 C 0.032 3.968 7 N -0.522 5.522 8 C 0.093 3.907 9 H 0.020 0.980 10 C -0.123 4.123 11 C 0.006 3.994 12 C -0.523 4.523 13 H 0.037 0.963 14 C 0.008 3.992 15 N -0.950 5.950 16 Si 0.946 3.054 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.251 1.251 20 C 0.045 3.955 21 H 0.063 0.937 22 H 0.027 0.973 23 H 0.078 0.922 24 H 0.348 0.652 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.266 0.734 35 H 0.037 0.963 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.471 -10.103 -1.249 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.323 5.323 3 C -0.026 4.026 4 H 0.105 0.895 5 C -0.177 4.177 6 C -0.097 4.097 7 N -0.247 5.247 8 C -0.016 4.016 9 H 0.038 0.962 10 C -0.181 4.181 11 C -0.032 4.032 12 C -0.561 4.561 13 H 0.055 0.945 14 C -0.189 4.189 15 N -0.591 5.591 16 Si 0.770 3.230 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.175 1.175 20 C -0.083 4.083 21 H 0.082 0.918 22 H 0.046 0.954 23 H 0.096 0.904 24 H 0.167 0.833 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.055 -10.523 -0.861 20.059 hybrid contribution 0.144 1.454 -1.003 1.772 sum -16.910 -9.070 -1.864 19.280 Atomic orbital electron populations 1.22245 0.86710 1.02600 1.00576 1.60468 1.08706 1.12561 1.50597 1.22376 0.95014 0.90207 0.95042 0.89513 1.23192 0.96265 1.00530 0.97735 1.23201 0.93447 0.95223 0.97786 1.64818 1.08648 1.35043 1.16165 1.21562 0.91594 0.93024 0.95398 0.96247 1.21630 0.99163 0.99218 0.98076 1.19462 0.93984 0.95014 0.94748 1.21394 1.15152 1.25414 0.94148 0.94453 1.25911 0.94582 0.94385 1.04033 1.70058 1.20744 1.31160 1.37165 0.85721 0.77662 0.80023 0.79641 1.19180 1.20916 1.17512 1.22893 0.91576 1.00960 0.92894 0.91813 0.95425 0.90371 0.83271 0.90163 0.89653 0.94612 0.91040 0.93733 0.92052 0.92663 0.96527 0.96673 0.92540 0.94446 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.54 127.69 1.35 1.75 16 2 N -0.69 -13.39 6.55 -510.07 -3.34 -16.73 16 3 C 0.08 1.88 3.30 45.79 0.15 2.03 16 4 H 0.09 1.82 7.84 -2.38 -0.02 1.80 16 5 C -0.14 -3.04 6.71 31.85 0.21 -2.83 16 6 C 0.03 0.97 5.49 86.71 0.48 1.44 16 7 N -0.52 -17.78 5.11 -857.49 -4.38 -22.16 16 8 C 0.09 3.82 1.77 44.92 0.08 3.90 16 9 H 0.02 0.86 8.00 -2.39 -0.02 0.84 16 10 C -0.12 -4.80 8.92 71.98 0.64 -4.16 16 11 C 0.01 0.28 3.52 29.85 0.11 0.38 16 12 C -0.52 -30.49 9.04 25.60 0.23 -30.26 16 13 H 0.04 2.38 7.18 -2.91 -0.02 2.36 16 14 C 0.01 0.45 5.47 84.65 0.46 0.91 16 15 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 16 Si 0.95 45.27 27.39 68.60 1.88 47.15 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.25 -11.43 6.66 99.48 0.66 -10.77 16 20 C 0.05 1.27 5.22 86.45 0.45 1.72 16 21 H 0.06 0.93 8.07 -2.39 -0.02 0.91 16 22 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.35 6.42 8.22 -89.69 -0.74 5.68 16 25 H 0.08 1.67 7.59 -2.38 -0.02 1.65 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.15 7.98 -2.39 -0.02 1.13 16 28 H 0.07 2.30 7.53 -2.39 -0.02 2.28 16 29 H 0.04 1.93 6.90 -2.39 -0.02 1.91 16 30 H 0.06 2.02 7.11 -2.39 -0.02 2.01 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.02 0.82 7.49 -2.39 -0.02 0.80 16 33 H 0.01 0.72 5.91 -2.39 -0.01 0.70 16 34 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.04 1.10 7.55 -2.39 -0.02 1.08 16 36 H 0.09 2.42 7.93 -2.38 -0.02 2.40 16 Total: -1.00 -64.98 280.03 -1.13 -66.11 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.26 Total: 10.62 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 4.16 Total: -25.09 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -7.42 Total: -98.78 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Total: -64.98 -1.13 -66.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.770 kcal (2) G-P(sol) polarization free energy of solvation -64.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds