Wall clock time and date at job start Mon Mar 30 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00063 * 2 1 4 4 H 1.09005 * 110.27138 * 327.08616 * 3 2 1 5 5 C 1.54593 * 110.39353 * 89.23034 * 3 2 1 6 6 C 1.54943 * 102.91958 * 140.91823 * 5 3 2 7 7 N 1.48532 * 103.22615 * 322.58640 * 6 5 3 8 8 C 1.46903 * 110.99705 * 159.72273 * 7 6 5 9 9 H 1.09000 * 109.47232 * 299.28442 * 8 7 6 10 10 C 1.53007 * 109.46884 * 179.28645 * 8 7 6 11 11 C 1.52998 * 109.47244 * 59.28665 * 8 7 6 12 12 C 1.50704 * 109.46838 * 185.55676 * 11 8 7 13 13 H 1.07994 * 119.99999 * 355.50998 * 12 11 8 14 14 C 1.37877 * 119.99489 * 175.51410 * 12 11 8 15 15 N 1.31513 * 119.99566 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00264 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47127 * 90.00524 * 16 14 12 18 18 H 1.48504 * 109.47289 * 210.00299 * 16 14 12 19 19 H 1.48495 * 109.47282 * 330.00638 * 16 14 12 20 20 C 1.47892 * 105.82280 * 39.20774 * 7 6 5 21 21 H 1.08997 * 109.47750 * 300.00182 * 1 2 3 22 22 H 1.09002 * 109.47322 * 60.00308 * 1 2 3 23 23 H 1.08998 * 109.47390 * 180.02562 * 1 2 3 24 24 H 1.00899 * 111.00193 * 236.03902 * 2 1 3 25 25 H 1.09001 * 110.72660 * 259.26974 * 5 3 2 26 26 H 1.08999 * 110.72834 * 22.38501 * 5 3 2 27 27 H 1.08995 * 110.66713 * 204.15012 * 6 5 3 28 28 H 1.09000 * 110.66964 * 81.02349 * 6 5 3 29 29 H 1.09000 * 109.47020 * 299.99926 * 10 8 7 30 30 H 1.08995 * 109.47089 * 59.99814 * 10 8 7 31 31 H 1.08997 * 109.46825 * 179.97438 * 10 8 7 32 32 H 1.08997 * 109.47182 * 65.55964 * 11 8 7 33 33 H 1.08998 * 109.47338 * 305.55504 * 11 8 7 34 34 H 0.97004 * 119.99725 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.92250 * 94.02097 * 20 7 6 36 36 H 1.09000 * 109.92027 * 215.12004 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3294 2.0316 -0.5556 5 6 2.1703 1.8813 1.4489 6 6 3.4971 2.6783 1.3779 7 7 4.3286 1.8719 0.4481 8 6 5.4163 2.6792 -0.1203 9 1 4.9949 3.5143 -0.6798 10 6 6.2595 1.8116 -1.0570 11 6 6.2977 3.2153 1.0096 12 6 7.3306 4.1528 0.4393 13 1 7.4029 4.2909 -0.6294 14 6 8.1833 4.8339 1.2818 15 7 9.0844 5.6524 0.7842 16 14 8.0577 4.5953 3.1303 17 1 8.9411 3.4764 3.5461 18 1 8.4791 5.8411 3.8200 19 1 6.6533 4.2787 3.4943 20 6 3.4090 1.4013 -0.6103 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8306 -0.5262 -0.7813 25 1 1.3435 2.5333 1.7309 26 1 2.2556 1.0462 2.1441 27 1 3.9646 2.7354 2.3609 28 1 3.3256 3.6760 0.9738 29 1 6.6810 0.9765 -0.4975 30 1 5.6317 1.4297 -1.8619 31 1 7.0663 2.4108 -1.4791 32 1 6.7969 2.3836 1.5068 33 1 5.6792 3.7509 1.7299 34 1 9.6841 6.1319 1.3770 35 1 3.4337 2.0883 -1.4562 36 1 3.6974 0.4018 -0.9355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695787205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:17 Heat of formation + Delta-G solvation = -21.263050 kcal Electronic energy + Delta-G solvation = -14617.857931 eV Core-core repulsion = 12328.622971 eV Total energy + Delta-G solvation = -2289.234961 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.38538 -37.14724 -35.11350 -33.68140 -30.77147 -29.46081 -28.68126 -25.64121 -24.56081 -22.92449 -21.18510 -20.75453 -19.09092 -16.96273 -16.93827 -16.54143 -16.03348 -15.37648 -15.09748 -14.72071 -14.68252 -14.09195 -13.85535 -13.47041 -13.15921 -12.98773 -12.95299 -12.65616 -12.29880 -12.11765 -11.99798 -11.86445 -11.80491 -11.63989 -11.36571 -11.13975 -10.75475 -9.42779 -9.24758 -8.28288 -6.31046 1.36171 1.36434 1.48743 2.36446 3.05670 3.08830 3.29024 3.61376 3.81596 4.17685 4.29003 4.35299 4.39258 4.52044 4.58120 4.62465 4.66086 4.75357 4.84396 4.95063 4.99789 5.03984 5.07919 5.15316 5.24376 5.27349 5.34012 5.51284 5.65048 6.00857 6.12033 6.22757 6.33708 6.48536 6.75725 7.32958 8.88061 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052558 B = 0.007073 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.615592 B = 3958.045819 C = 4310.131006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.692 5.692 3 C 0.082 3.918 4 H 0.056 0.944 5 C -0.102 4.102 6 C 0.032 3.968 7 N -0.519 5.519 8 C 0.092 3.908 9 H 0.020 0.980 10 C -0.123 4.123 11 C 0.002 3.998 12 C -0.522 4.522 13 H 0.038 0.962 14 C 0.008 3.992 15 N -0.950 5.950 16 Si 0.945 3.055 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.250 1.250 20 C 0.037 3.963 21 H 0.062 0.938 22 H 0.026 0.974 23 H 0.079 0.921 24 H 0.348 0.652 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.015 0.985 33 H 0.019 0.981 34 H 0.266 0.734 35 H 0.041 0.959 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.138 -10.303 -0.509 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.324 5.324 3 C -0.028 4.028 4 H 0.074 0.926 5 C -0.141 4.141 6 C -0.096 4.096 7 N -0.244 5.244 8 C -0.017 4.017 9 H 0.038 0.962 10 C -0.180 4.180 11 C -0.036 4.036 12 C -0.560 4.560 13 H 0.056 0.944 14 C -0.189 4.189 15 N -0.591 5.591 16 Si 0.769 3.231 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.173 1.173 20 C -0.091 4.091 21 H 0.081 0.919 22 H 0.045 0.955 23 H 0.098 0.902 24 H 0.168 0.832 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.713 -10.704 0.463 19.852 hybrid contribution 0.116 1.423 -0.777 1.625 sum -16.597 -9.282 -0.315 19.019 Atomic orbital electron populations 1.22269 0.86760 1.02617 1.00482 1.60489 1.08688 1.12691 1.50539 1.22348 0.94108 0.90157 0.96220 0.92574 1.22499 0.95416 0.99359 0.96796 1.23215 0.93782 0.95163 0.97451 1.64784 1.09055 1.35442 1.15093 1.21587 0.91755 0.92961 0.95358 0.96190 1.21621 0.99090 0.99121 0.98182 1.19516 0.94213 0.94911 0.94956 1.21385 1.16240 1.24401 0.93978 0.94393 1.25900 0.94555 0.94427 1.03992 1.70055 1.21850 1.29963 1.37253 0.85733 0.79895 0.77762 0.79716 1.19383 1.20912 1.17330 1.23063 0.91430 1.01225 0.93393 0.91934 0.95535 0.90238 0.83240 0.90094 0.90258 0.91117 0.94598 0.92650 0.91949 0.93730 0.96641 0.96316 0.92551 0.94071 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.55 127.69 1.35 1.77 16 2 N -0.69 -13.53 6.65 -510.04 -3.39 -16.92 16 3 C 0.08 1.87 3.32 45.80 0.15 2.02 16 4 H 0.06 1.19 7.82 -2.38 -0.02 1.17 16 5 C -0.10 -2.52 6.76 31.80 0.22 -2.31 16 6 C 0.03 1.02 5.38 86.65 0.47 1.49 16 7 N -0.52 -17.89 5.11 -857.85 -4.38 -22.27 16 8 C 0.09 3.76 1.78 44.92 0.08 3.84 16 9 H 0.02 0.87 7.98 -2.39 -0.02 0.86 16 10 C -0.12 -4.68 8.97 71.98 0.65 -4.03 16 11 C 0.00 0.09 3.50 29.85 0.10 0.19 16 12 C -0.52 -30.38 9.04 25.60 0.23 -30.15 16 13 H 0.04 2.41 7.18 -2.91 -0.02 2.39 16 14 C 0.01 0.47 5.47 84.65 0.46 0.94 16 15 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 16 Si 0.95 45.42 27.56 68.60 1.89 47.31 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 19 H -0.25 -11.27 6.41 99.48 0.64 -10.63 16 20 C 0.04 1.01 5.18 86.45 0.45 1.46 16 21 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.03 0.36 8.07 -2.39 -0.02 0.34 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.35 5.98 8.10 -89.69 -0.73 5.26 16 25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 27 H 0.07 2.40 7.53 -2.39 -0.02 2.39 16 28 H 0.04 1.19 8.01 -2.39 -0.02 1.17 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.97 7.26 -2.39 -0.02 1.95 16 31 H 0.04 1.90 6.90 -2.39 -0.02 1.89 16 32 H 0.02 0.76 7.79 -2.39 -0.02 0.74 16 33 H 0.02 0.90 5.38 -2.39 -0.01 0.89 16 34 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.04 1.13 7.63 -2.39 -0.02 1.11 16 36 H 0.09 2.22 7.48 -2.39 -0.02 2.20 16 Total: -1.00 -65.37 279.92 -1.19 -66.56 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.24 Total: 9.96 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 4.15 Total: -24.79 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -7.47 Total: -99.04 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.89 Total: 47.31 kcal Total: -65.37 -1.19 -66.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.302 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds