Wall clock time and date at job start Mon Mar 30 2020 03:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46799 * 2 1 4 4 C 1.53003 * 109.47306 * 240.00391 * 2 1 3 5 5 C 1.50692 * 109.47169 * 170.88415 * 4 2 1 6 6 H 1.07998 * 120.00404 * 354.23376 * 5 4 2 7 7 C 1.37885 * 119.99886 * 174.23753 * 5 4 2 8 8 N 1.31514 * 120.00040 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99935 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47203 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46954 * 119.99610 * 9 7 5 12 12 H 1.48498 * 109.47337 * 239.99841 * 9 7 5 13 13 N 1.46891 * 109.47369 * 120.00090 * 2 1 3 14 14 C 1.48557 * 111.00036 * 100.71313 * 13 2 1 15 15 C 1.54384 * 104.59691 * 159.04163 * 14 13 2 16 16 C 1.54260 * 105.05897 * 336.14198 * 15 14 13 17 17 C 1.48564 * 111.00167 * 216.13013 * 13 2 1 18 18 H 1.09000 * 110.51096 * 319.79189 * 17 13 2 19 19 C 1.52999 * 110.41139 * 82.17692 * 17 13 2 20 20 N 1.46895 * 109.47428 * 297.94978 * 19 17 13 21 21 H 1.09007 * 109.47287 * 175.10995 * 1 2 3 22 22 H 1.08997 * 109.47514 * 295.10533 * 1 2 3 23 23 H 1.08995 * 109.47601 * 55.11482 * 1 2 3 24 24 H 1.09000 * 109.47165 * 290.88944 * 4 2 1 25 25 H 1.09001 * 109.46832 * 50.88374 * 4 2 1 26 26 H 0.96994 * 120.00403 * 180.02562 * 8 7 5 27 27 H 1.08999 * 110.41709 * 40.25636 * 14 13 2 28 28 H 1.08999 * 110.41028 * 277.81729 * 14 13 2 29 29 H 1.08999 * 110.32137 * 217.24883 * 15 14 13 30 30 H 1.08993 * 110.32577 * 95.04207 * 15 14 13 31 31 H 1.09001 * 110.32276 * 118.89415 * 16 15 14 32 32 H 1.08997 * 110.32666 * 241.10741 * 16 15 14 33 33 H 1.08996 * 109.46908 * 57.95285 * 19 17 13 34 34 H 1.08998 * 109.46974 * 177.94597 * 19 17 13 35 35 H 1.00900 * 110.99686 * 180.45008 * 20 19 17 36 36 H 1.00898 * 111.00276 * 304.40864 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5300 -0.5292 -1.3670 6 1 4.0462 0.1246 -0.6797 7 6 4.2343 -1.1882 -2.3523 8 7 3.6058 -1.9847 -3.1891 9 14 6.0812 -0.9497 -2.4986 10 1 6.5440 -0.0101 -1.4459 11 1 6.7641 -2.2576 -2.3304 12 1 6.4038 -0.3913 -3.8363 13 7 2.0196 -0.6925 1.1993 14 6 2.4402 -2.0806 0.8782 15 6 3.3920 -2.4747 2.0281 16 6 3.9269 -1.1378 2.5815 17 6 3.2533 -0.0485 1.7195 18 1 3.9069 0.2442 0.8979 19 6 2.8992 1.1678 2.5775 20 7 2.2010 2.1625 1.7523 21 1 -0.3634 -1.0240 -0.0876 22 1 -0.3634 0.4360 0.9305 23 1 -0.3634 0.5877 -0.8429 24 1 1.8157 -1.7850 -1.1718 25 1 1.5498 -0.3099 -2.1318 26 1 4.1012 -2.4486 -3.8820 27 1 2.9657 -2.1075 -0.0764 28 1 1.5758 -2.7442 0.8560 29 1 4.2130 -3.0828 1.6484 30 1 2.8470 -3.0141 2.8027 31 1 3.6444 -1.0210 3.6278 32 1 5.0105 -1.0898 2.4735 33 1 2.2522 0.8577 3.3980 34 1 3.8121 1.6063 2.9805 35 1 1.9627 2.9792 2.2949 36 1 2.7514 2.4129 0.9446 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695789308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:38 Heat of formation + Delta-G solvation = 9.353355 kcal Electronic energy + Delta-G solvation = -15489.843083 eV Core-core repulsion = 13201.935750 eV Total energy + Delta-G solvation = -2287.907334 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.89899 -34.32747 -33.51233 -32.19002 -28.43726 -28.07075 -27.34773 -23.55870 -22.93553 -20.92893 -19.77677 -18.34579 -16.34754 -15.43741 -15.24108 -14.60550 -14.40867 -14.19075 -13.45018 -12.78699 -12.71162 -12.32118 -11.92455 -11.53089 -11.43208 -11.07476 -10.97750 -10.64456 -10.56584 -10.40040 -10.29411 -10.08998 -10.04866 -9.32079 -9.20813 -8.86981 -8.40690 -8.10877 -7.13710 -6.03797 -4.04959 3.25513 3.34259 3.35798 4.40713 4.85036 4.98524 5.30966 5.41988 5.52488 5.64855 5.83642 5.89162 6.09218 6.25546 6.29047 6.36418 6.48704 6.51847 6.56024 6.65690 6.84514 6.88016 6.98084 7.07002 7.17693 7.43591 7.51228 7.65118 7.71173 7.79558 7.94273 8.13123 8.32025 8.41537 9.01193 9.57008 11.06416 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.012457 C = 0.011458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.832417 B = 2247.274138 C = 2443.018671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.071 3.929 3 H 0.081 0.919 4 C -0.010 4.010 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.485 5.485 14 C 0.005 3.995 15 C -0.120 4.120 16 C -0.114 4.114 17 C 0.053 3.947 18 H 0.073 0.927 19 C 0.081 3.919 20 N -0.838 5.838 21 H 0.037 0.963 22 H 0.047 0.953 23 H 0.040 0.960 24 H 0.031 0.969 25 H 0.011 0.989 26 H 0.260 0.740 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.016 0.984 35 H 0.328 0.672 36 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 3.688 9.524 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.038 4.038 3 H 0.099 0.901 4 C -0.047 4.047 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.209 5.209 14 C -0.123 4.123 15 C -0.158 4.158 16 C -0.153 4.153 17 C -0.056 4.056 18 H 0.091 0.909 19 C -0.050 4.050 20 N -0.368 5.368 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.130 0.870 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.034 0.966 35 H 0.140 0.860 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.262 3.032 9.667 10.210 hybrid contribution 2.520 0.615 -0.602 2.663 sum 1.258 3.647 9.065 9.852 Atomic orbital electron populations 1.21615 0.96940 0.99819 0.99736 1.21927 0.93433 0.98777 0.89618 0.90140 1.19877 0.95447 0.96839 0.92584 1.21314 0.93105 1.26652 1.14148 0.92410 1.25002 0.97935 0.95423 0.95816 1.69971 1.35475 1.29299 1.18103 0.86678 0.86324 0.77949 0.77947 1.19872 1.21026 1.21065 1.65453 1.25343 1.01389 1.28733 1.23655 0.97755 0.90559 1.00288 1.22224 0.98895 0.96447 0.98275 1.22203 0.98977 0.95398 0.98742 1.22817 0.92847 0.93181 0.96747 0.90918 1.21751 0.95157 0.92374 0.95763 1.58790 1.50559 1.15978 1.11432 0.94424 0.93413 0.94073 0.95037 0.97100 0.93059 0.86954 0.92584 0.92346 0.92806 0.92321 0.92452 0.91209 0.96632 0.85978 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 9.51 37.16 0.35 -2.05 16 2 C 0.07 1.51 2.14 -67.72 -0.15 1.37 16 3 H 0.08 1.71 4.98 -51.92 -0.26 1.45 16 4 C -0.01 -0.25 3.94 -27.89 -0.11 -0.36 16 5 C -0.51 -13.65 6.66 -34.44 -0.23 -13.88 16 6 H 0.06 1.51 5.08 -52.49 -0.27 1.24 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 9 Si 0.88 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.49 -9.72 4.93 -214.24 -1.06 -10.78 16 14 C 0.00 0.10 5.15 -2.18 -0.01 0.09 16 15 C -0.12 -2.13 7.00 -25.35 -0.18 -2.30 16 16 C -0.11 -1.90 6.55 -25.35 -0.17 -2.07 16 17 C 0.05 0.98 2.30 -66.07 -0.15 0.82 16 18 H 0.07 1.53 5.00 -51.93 -0.26 1.27 16 19 C 0.08 1.24 6.38 -3.83 -0.02 1.22 16 20 N -0.84 -12.34 7.67 -10.37 -0.08 -12.42 16 21 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.03 0.85 5.99 -51.93 -0.31 0.54 16 25 H 0.01 0.30 8.12 -51.93 -0.42 -0.13 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.11 2.77 3.97 -51.93 -0.21 2.56 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.33 3.94 9.08 -39.29 -0.36 3.58 16 36 H 0.34 5.14 8.02 -39.29 -0.32 4.83 16 LS Contribution 271.50 15.07 4.09 4.09 Total: -1.00 -28.33 271.50 -7.83 -36.16 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.74 Total: 7.70 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -0.76 Total: -15.61 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.40 Total: -48.43 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.33 -7.83 -36.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.516 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds