Wall clock time and date at job start Mon Mar 30 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46799 * 2 1 4 4 C 1.53003 * 109.47306 * 240.00391 * 2 1 3 5 5 C 1.50692 * 109.47169 * 170.88415 * 4 2 1 6 6 H 1.07998 * 120.00404 * 354.23376 * 5 4 2 7 7 C 1.37885 * 119.99886 * 174.23753 * 5 4 2 8 8 N 1.31514 * 120.00040 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99935 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47203 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46954 * 119.99610 * 9 7 5 12 12 H 1.48498 * 109.47337 * 239.99841 * 9 7 5 13 13 N 1.46891 * 109.47369 * 120.00090 * 2 1 3 14 14 C 1.48557 * 111.00036 * 100.71313 * 13 2 1 15 15 C 1.54384 * 104.59691 * 159.04163 * 14 13 2 16 16 C 1.54260 * 105.05897 * 336.14198 * 15 14 13 17 17 C 1.48564 * 111.00167 * 216.13013 * 13 2 1 18 18 H 1.09000 * 110.51096 * 319.79189 * 17 13 2 19 19 C 1.52999 * 110.41139 * 82.17692 * 17 13 2 20 20 N 1.46895 * 109.47428 * 297.94978 * 19 17 13 21 21 H 1.09007 * 109.47287 * 175.10995 * 1 2 3 22 22 H 1.08997 * 109.47514 * 295.10533 * 1 2 3 23 23 H 1.08995 * 109.47601 * 55.11482 * 1 2 3 24 24 H 1.09000 * 109.47165 * 290.88944 * 4 2 1 25 25 H 1.09001 * 109.46832 * 50.88374 * 4 2 1 26 26 H 0.96994 * 120.00403 * 180.02562 * 8 7 5 27 27 H 1.08999 * 110.41709 * 40.25636 * 14 13 2 28 28 H 1.08999 * 110.41028 * 277.81729 * 14 13 2 29 29 H 1.08999 * 110.32137 * 217.24883 * 15 14 13 30 30 H 1.08993 * 110.32577 * 95.04207 * 15 14 13 31 31 H 1.09001 * 110.32276 * 118.89415 * 16 15 14 32 32 H 1.08997 * 110.32666 * 241.10741 * 16 15 14 33 33 H 1.08996 * 109.46908 * 57.95285 * 19 17 13 34 34 H 1.08998 * 109.46974 * 177.94597 * 19 17 13 35 35 H 1.00900 * 110.99686 * 180.45008 * 20 19 17 36 36 H 1.00898 * 111.00276 * 304.40864 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5300 -0.5292 -1.3670 6 1 4.0462 0.1246 -0.6797 7 6 4.2343 -1.1882 -2.3523 8 7 3.6058 -1.9847 -3.1891 9 14 6.0812 -0.9497 -2.4986 10 1 6.5440 -0.0101 -1.4459 11 1 6.7641 -2.2576 -2.3304 12 1 6.4038 -0.3913 -3.8363 13 7 2.0196 -0.6925 1.1993 14 6 2.4402 -2.0806 0.8782 15 6 3.3920 -2.4747 2.0281 16 6 3.9269 -1.1378 2.5815 17 6 3.2533 -0.0485 1.7195 18 1 3.9069 0.2442 0.8979 19 6 2.8992 1.1678 2.5775 20 7 2.2010 2.1625 1.7523 21 1 -0.3634 -1.0240 -0.0876 22 1 -0.3634 0.4360 0.9305 23 1 -0.3634 0.5877 -0.8429 24 1 1.8157 -1.7850 -1.1718 25 1 1.5498 -0.3099 -2.1318 26 1 4.1012 -2.4486 -3.8820 27 1 2.9657 -2.1075 -0.0764 28 1 1.5758 -2.7442 0.8560 29 1 4.2130 -3.0828 1.6484 30 1 2.8470 -3.0141 2.8027 31 1 3.6444 -1.0210 3.6278 32 1 5.0105 -1.0898 2.4735 33 1 2.2522 0.8577 3.3980 34 1 3.8121 1.6063 2.9805 35 1 1.9627 2.9792 2.2949 36 1 2.7514 2.4129 0.9446 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:37 Heat of formation + Delta-G solvation = -10.896967 kcal Electronic energy + Delta-G solvation = -15490.721203 eV Core-core repulsion = 13201.935750 eV Total energy + Delta-G solvation = -2288.785454 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47747 -35.96714 -34.89246 -34.14763 -29.94784 -29.59561 -29.28372 -24.99978 -24.86895 -22.46498 -21.21924 -20.05027 -18.40707 -17.01919 -16.71981 -16.36491 -15.76102 -15.70916 -14.87112 -14.55874 -14.39866 -13.95551 -13.57060 -13.28824 -13.01843 -12.83385 -12.59329 -12.34755 -12.12508 -12.08338 -11.95875 -11.75588 -11.56157 -11.07531 -10.97206 -10.74432 -10.53710 -9.30279 -8.84945 -8.16066 -6.22886 1.35465 1.37512 1.47670 2.39382 3.15402 3.43098 3.69983 4.01495 4.18035 4.26153 4.48618 4.59589 4.61313 4.70907 4.83599 4.90266 4.99076 5.02137 5.09714 5.20107 5.23389 5.29045 5.34944 5.40629 5.41260 5.66586 5.69683 5.75484 5.89597 6.27446 6.30745 6.48375 6.63793 6.76168 6.90978 7.42665 8.95193 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.012457 C = 0.011458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.832417 B = 2247.274138 C = 2443.018671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.079 3.921 3 H 0.085 0.915 4 C -0.001 4.001 5 C -0.511 4.511 6 H 0.065 0.935 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.948 3.052 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.478 5.478 14 C 0.003 3.997 15 C -0.116 4.116 16 C -0.110 4.110 17 C 0.048 3.952 18 H 0.043 0.957 19 C 0.089 3.911 20 N -0.848 5.848 21 H 0.028 0.972 22 H 0.062 0.938 23 H 0.045 0.955 24 H 0.006 0.994 25 H -0.022 1.022 26 H 0.260 0.740 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.346 0.654 36 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 4.702 11.658 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.030 4.030 3 H 0.103 0.897 4 C -0.038 4.038 5 C -0.548 4.548 6 H 0.083 0.917 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.774 3.226 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.202 5.202 14 C -0.125 4.125 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.061 4.061 18 H 0.061 0.939 19 C -0.043 4.043 20 N -0.379 5.379 21 H 0.048 0.952 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.024 0.976 25 H -0.004 1.004 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.160 0.840 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.415 4.069 11.827 12.514 hybrid contribution 2.205 0.294 -1.266 2.559 sum 1.790 4.362 10.561 11.566 Atomic orbital electron populations 1.21540 0.95549 0.99572 1.00704 1.21815 0.94567 0.98379 0.88273 0.89707 1.19788 0.95150 0.95530 0.93364 1.21579 0.93687 1.25889 1.13688 0.91712 1.25811 1.02485 0.95287 0.95673 1.70108 1.37305 1.30697 1.19047 0.85642 0.80876 0.78009 0.78057 1.18491 1.20837 1.20996 1.65525 1.26373 1.00963 1.27314 1.23494 0.97804 0.91338 0.99847 1.22204 0.98261 0.97492 0.97488 1.22227 0.99292 0.93619 0.99729 1.22907 0.91602 0.95022 0.96610 0.93889 1.21650 0.96297 0.91229 0.95081 1.58714 1.50549 1.16936 1.11724 0.95230 0.91877 0.93637 0.97605 1.00379 0.93147 0.91090 0.93261 0.92531 0.90694 0.89662 0.91664 0.90638 0.94521 0.84001 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 9.51 71.98 0.68 -3.76 16 2 C 0.08 3.34 2.14 44.92 0.10 3.43 16 3 H 0.09 3.55 4.98 -2.38 -0.01 3.53 16 4 C 0.00 -0.03 3.94 29.85 0.12 0.09 16 5 C -0.51 -27.57 6.66 25.60 0.17 -27.40 16 6 H 0.06 3.37 5.08 -2.91 -0.01 3.36 16 7 C 0.01 0.29 5.46 84.66 0.46 0.75 16 8 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 9 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 N -0.48 -18.66 4.93 -831.73 -4.10 -22.76 16 14 C 0.00 0.13 5.15 86.45 0.45 0.58 16 15 C -0.12 -3.90 7.00 31.49 0.22 -3.68 16 16 C -0.11 -3.33 6.55 31.49 0.21 -3.12 16 17 C 0.05 1.65 2.30 45.06 0.10 1.75 16 18 H 0.04 1.76 5.00 -2.39 -0.01 1.75 16 19 C 0.09 2.43 6.38 86.30 0.55 2.98 16 20 N -0.85 -22.77 7.67 -186.73 -1.43 -24.20 16 21 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.01 0.33 5.99 -2.39 -0.01 0.31 16 25 H -0.02 -1.28 8.12 -2.39 -0.02 -1.30 16 26 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 27 H 0.07 3.60 3.97 -2.39 -0.01 3.59 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.08 2.15 7.85 -2.39 -0.02 2.13 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 2.03 8.13 -2.39 -0.02 2.01 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.35 7.24 9.08 -89.69 -0.81 6.43 16 36 H 0.34 9.52 8.02 -89.70 -0.72 8.80 16 Total: -1.00 -61.35 271.50 -0.62 -61.97 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.46 Total: 23.44 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 3.06 Total: -28.38 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -5.25 Total: -102.69 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -61.35 -0.62 -61.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.076 kcal (2) G-P(sol) polarization free energy of solvation -61.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds