Wall clock time and date at job start Mon Mar 30 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 C 1.53007 * 109.47192 * 119.99550 * 2 1 3 5 5 C 1.50698 * 109.47109 * 185.00123 * 4 2 1 6 6 H 1.07997 * 120.00485 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99722 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00148 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99831 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47069 * 60.00331 * 9 7 5 11 11 H 1.48503 * 109.47175 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47425 * 300.00053 * 9 7 5 13 13 N 1.46896 * 109.47713 * 239.99885 * 2 1 3 14 14 C 1.47848 * 110.99458 * 320.91790 * 13 2 1 15 15 C 1.54910 * 104.79562 * 146.36156 * 14 13 2 16 16 C 1.55143 * 101.65378 * 322.93009 * 15 14 13 17 17 C 1.47441 * 111.00044 * 81.75347 * 13 2 1 18 18 H 1.09007 * 109.88511 * 117.17662 * 17 13 2 19 19 C 1.52996 * 109.88904 * 356.15843 * 17 13 2 20 20 N 1.46901 * 109.47373 * 74.93426 * 19 17 13 21 21 H 1.09007 * 109.47091 * 200.31038 * 1 2 3 22 22 H 1.08997 * 109.47352 * 320.30997 * 1 2 3 23 23 H 1.09004 * 109.47096 * 80.31103 * 1 2 3 24 24 H 1.08998 * 109.46951 * 305.00315 * 4 2 1 25 25 H 1.09005 * 109.46834 * 65.00532 * 4 2 1 26 26 H 0.97004 * 120.00240 * 179.97438 * 8 7 5 27 27 H 1.09001 * 110.37623 * 265.18435 * 14 13 2 28 28 H 1.08997 * 110.38028 * 27.42023 * 14 13 2 29 29 H 1.09007 * 110.98843 * 81.02070 * 15 14 13 30 30 H 1.09001 * 110.99216 * 204.79872 * 15 14 13 31 31 H 1.08998 * 110.70400 * 277.27551 * 16 15 14 32 32 H 1.08991 * 110.70918 * 154.03570 * 16 15 14 33 33 H 1.09003 * 109.47405 * 194.93816 * 19 17 13 34 34 H 1.09005 * 109.46853 * 314.93634 * 19 17 13 35 35 H 1.00902 * 110.99967 * 56.05009 * 20 19 17 36 36 H 1.00900 * 110.99810 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5397 7 6 4.2304 -1.1934 2.3580 8 7 3.5765 -1.8384 3.2991 9 14 6.0921 -1.0621 2.4363 10 1 6.4854 0.3686 2.4960 11 1 6.5871 -1.7620 3.6489 12 1 6.6839 -1.6881 1.2267 13 7 2.0197 -0.6925 -1.1993 14 6 1.1862 -1.8744 -1.5061 15 6 1.1852 -1.9672 -3.0524 16 6 1.1475 -0.4697 -3.4562 17 6 2.0098 0.2052 -2.3689 18 1 3.0266 0.3489 -2.7347 19 6 1.3999 1.5546 -1.9841 20 7 2.3682 2.3204 -1.1878 21 1 -0.3634 -0.9638 0.3567 22 1 -0.3634 0.7908 0.6563 23 1 -0.3633 0.1730 -1.0130 24 1 1.6053 -0.2616 2.1370 25 1 1.7517 -1.7715 1.2057 26 1 4.0609 -2.2458 4.0342 27 1 1.6266 -2.7723 -1.0725 28 1 0.1724 -1.7313 -1.1322 29 1 2.0943 -2.4468 -3.4154 30 1 0.2996 -2.4915 -3.4116 31 1 0.1265 -0.0890 -3.4297 32 1 1.5883 -0.3253 -4.4425 33 1 1.1509 2.1117 -2.8874 34 1 0.4959 1.3907 -1.3975 35 1 3.2391 2.4302 -1.6854 36 1 1.9888 3.2167 -0.9215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:40 Heat of formation + Delta-G solvation = 0.756839 kcal Electronic energy + Delta-G solvation = -15305.860204 eV Core-core repulsion = 13017.580097 eV Total energy + Delta-G solvation = -2288.280107 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.96532 -35.70532 -35.21523 -33.92615 -30.05257 -29.73695 -29.17865 -25.41550 -24.31919 -22.78461 -21.51723 -19.56609 -18.26780 -17.45956 -16.88500 -16.33647 -15.86453 -15.68630 -15.08259 -14.62312 -14.23005 -13.74404 -13.62782 -13.33596 -13.13763 -12.71114 -12.61715 -12.51436 -12.41894 -12.04835 -11.83012 -11.75530 -11.48428 -11.24167 -10.97857 -10.84452 -10.41056 -9.17456 -8.65344 -8.01785 -6.04916 1.42418 1.46867 1.53806 2.52699 3.26487 3.37452 3.76181 3.87605 3.94059 4.13539 4.38790 4.42167 4.48416 4.54571 4.65343 4.72931 4.75348 4.87189 5.00302 5.10463 5.16672 5.22163 5.32094 5.37411 5.48860 5.53971 5.58720 5.90464 6.07830 6.31414 6.48777 6.67988 6.74634 6.79090 7.09859 7.59554 9.10789 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032507 B = 0.009800 C = 0.009420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.145029 B = 2856.320450 C = 2971.562776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.050 3.950 3 H 0.145 0.855 4 C 0.044 3.956 5 C -0.481 4.481 6 H 0.059 0.941 7 C -0.015 4.015 8 N -0.948 5.948 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.520 5.520 14 C 0.027 3.973 15 C -0.120 4.120 16 C -0.126 4.126 17 C 0.069 3.931 18 H 0.066 0.934 19 C 0.033 3.967 20 N -0.847 5.847 21 H 0.034 0.966 22 H 0.054 0.946 23 H 0.073 0.927 24 H -0.020 1.020 25 H -0.029 1.029 26 H 0.255 0.745 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.345 0.655 36 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.042 6.452 -14.734 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.059 4.059 3 H 0.161 0.839 4 C 0.006 3.994 5 C -0.519 4.519 6 H 0.077 0.923 7 C -0.210 4.210 8 N -0.591 5.591 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.243 5.243 14 C -0.101 4.101 15 C -0.158 4.158 16 C -0.165 4.165 17 C -0.040 4.040 18 H 0.084 0.916 19 C -0.098 4.098 20 N -0.379 5.379 21 H 0.053 0.947 22 H 0.073 0.927 23 H 0.091 0.909 24 H -0.002 1.002 25 H -0.010 1.010 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.159 0.841 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.541 5.635 -13.962 16.044 hybrid contribution 0.135 0.408 -0.101 0.442 sum -5.406 6.044 -14.063 16.234 Atomic orbital electron populations 1.22602 0.98731 1.00476 1.01186 1.22724 0.91026 1.02781 0.89350 0.83879 1.18959 0.95274 0.92935 0.92195 1.21466 0.93288 1.31103 1.06078 0.92275 1.25930 1.02968 0.96076 0.95981 1.70119 1.37009 1.38695 1.13300 0.85592 0.80619 0.78375 0.76887 1.19263 1.21569 1.19965 1.63460 1.51643 1.06430 1.02780 1.23190 0.96309 0.94159 0.96451 1.22647 1.02483 0.97104 0.93581 1.22795 1.00275 0.94683 0.98706 1.22559 0.98857 0.91804 0.90731 0.91596 1.22663 0.96668 0.93983 0.96440 1.58592 1.07714 1.23743 1.47827 0.94669 0.92657 0.90879 1.00163 1.01037 0.93618 0.94273 0.92806 0.91524 0.89284 0.90333 0.89301 0.93504 0.89476 0.84114 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.06 6.63 71.98 0.48 -5.59 16 2 C 0.05 2.11 1.77 44.92 0.08 2.19 16 3 H 0.14 5.99 4.18 -2.40 -0.01 5.98 16 4 C 0.04 2.46 4.45 29.85 0.13 2.59 16 5 C -0.48 -28.93 8.84 25.60 0.23 -28.70 16 6 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 7 C -0.02 -0.93 5.46 84.66 0.46 -0.47 16 8 N -0.95 -61.51 13.29 21.45 0.28 -61.23 16 9 Si 0.96 47.75 29.54 68.60 2.03 49.78 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 12 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 13 N -0.52 -20.41 4.77 -835.52 -3.98 -24.39 16 14 C 0.03 0.96 5.92 86.77 0.51 1.47 16 15 C -0.12 -3.12 7.08 31.98 0.23 -2.89 16 16 C -0.13 -2.84 6.44 31.78 0.20 -2.63 16 17 C 0.07 2.04 3.39 45.26 0.15 2.19 16 18 H 0.07 2.05 8.06 -2.38 -0.02 2.03 16 19 C 0.03 0.83 5.26 86.30 0.45 1.29 16 20 N -0.85 -22.65 7.13 -186.71 -1.33 -23.98 16 21 H 0.03 1.32 6.96 -2.38 -0.02 1.30 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.07 2.13 5.65 -2.38 -0.01 2.11 16 24 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 25 H -0.03 -1.80 7.83 -2.38 -0.02 -1.81 16 26 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.86 4.88 -2.39 -0.01 1.85 16 29 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.54 7.85 -2.39 -0.02 1.53 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.09 2.33 3.82 -2.38 -0.01 2.32 16 35 H 0.34 8.50 8.93 -89.69 -0.80 7.70 16 36 H 0.35 7.56 9.08 -89.69 -0.81 6.74 16 Total: -1.00 -71.26 271.52 -0.61 -71.87 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.54 Total: 18.49 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 2.93 Total: -30.54 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -5.03 Total: -109.60 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -71.26 -0.61 -71.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.630 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds