Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46753 * 2 1 4 4 C 1.52991 * 109.47365 * 119.99974 * 2 1 3 5 5 C 1.50701 * 109.47377 * 185.00193 * 4 2 1 6 6 H 1.08006 * 119.99699 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00345 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99991 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00101 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46902 * 60.00218 * 9 7 5 11 11 H 1.48498 * 109.47008 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47321 * 300.00293 * 9 7 5 13 13 N 1.46903 * 109.46854 * 240.00389 * 2 1 3 14 14 C 1.47436 * 110.99924 * 305.71779 * 13 2 1 15 15 C 1.54318 * 107.23178 * 123.25899 * 14 13 2 16 16 C 1.55141 * 103.01731 * 22.28694 * 15 14 13 17 17 C 1.47841 * 111.00203 * 66.56633 * 13 2 1 18 18 H 1.09003 * 110.37522 * 332.57051 * 17 13 2 19 19 C 1.52995 * 110.37807 * 94.80296 * 17 13 2 20 20 N 1.46905 * 109.47348 * 305.00561 * 19 17 13 21 21 H 1.09002 * 109.47051 * 306.43319 * 1 2 3 22 22 H 1.08997 * 109.47290 * 66.43711 * 1 2 3 23 23 H 1.09003 * 109.46888 * 186.43577 * 1 2 3 24 24 H 1.09005 * 109.47181 * 305.00150 * 4 2 1 25 25 H 1.09004 * 109.47190 * 64.99954 * 4 2 1 26 26 H 0.96997 * 119.99816 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.89245 * 242.66778 * 14 13 2 28 28 H 1.09009 * 109.89138 * 3.85664 * 14 13 2 29 29 H 1.09008 * 110.70621 * 140.66688 * 15 14 13 30 30 H 1.08999 * 110.70872 * 263.89818 * 15 14 13 31 31 H 1.09005 * 110.98527 * 206.25417 * 16 15 14 32 32 H 1.08995 * 110.99059 * 82.43808 * 16 15 14 33 33 H 1.08991 * 109.47371 * 184.99898 * 19 17 13 34 34 H 1.09004 * 109.46635 * 65.00076 * 19 17 13 35 35 H 1.00894 * 111.00074 * 179.97438 * 20 19 17 36 36 H 1.00901 * 110.99368 * 303.95000 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5420 -0.6148 1.3127 6 1 4.0791 -0.0860 0.5391 7 6 4.2306 -1.1934 2.3577 8 7 3.5767 -1.8386 3.2989 9 14 6.0923 -1.0621 2.4359 10 1 6.4855 0.3686 2.4957 11 1 6.5873 -1.7620 3.6485 12 1 6.6840 -1.6879 1.2262 13 7 2.0197 -0.6924 -1.1995 14 6 1.4382 -2.0432 -1.3042 15 6 0.7254 -2.1295 -2.6702 16 6 1.4255 -1.0215 -3.5003 17 6 1.6788 0.0631 -2.4237 18 1 0.7800 0.6588 -2.2641 19 6 2.8457 0.9619 -2.8374 20 7 3.2184 1.8296 -1.7121 21 1 -0.3633 0.6103 0.8268 22 1 -0.3634 0.4108 -0.9419 23 1 -0.3633 -1.0212 0.1152 24 1 1.6055 -0.2617 2.1369 25 1 1.7517 -1.7715 1.2055 26 1 4.0612 -2.2460 4.0338 27 1 2.2281 -2.7923 -1.2502 28 1 0.7191 -2.2008 -0.5001 29 1 0.8807 -3.1080 -3.1249 30 1 -0.3385 -1.9173 -2.5639 31 1 0.7678 -0.6470 -4.2847 32 1 2.3646 -1.3824 -3.9195 33 1 2.5478 1.5763 -3.6869 34 1 3.6988 0.3438 -3.1175 35 1 3.9879 2.4331 -1.9602 36 1 2.4262 2.3663 -1.3917 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = -19.863378 kcal Electronic energy + Delta-G solvation = -15220.789644 eV Core-core repulsion = 12931.615377 eV Total energy + Delta-G solvation = -2289.174266 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51708 -35.94248 -34.94432 -33.94520 -30.02283 -29.71052 -29.00447 -25.21396 -24.85020 -22.46139 -21.31446 -19.87540 -18.22764 -17.58566 -16.64771 -16.38668 -15.67097 -15.21750 -15.09656 -14.53933 -14.45586 -13.99080 -13.50308 -13.45938 -13.11108 -12.81145 -12.61378 -12.45137 -12.24342 -12.18512 -11.90680 -11.72381 -11.48966 -11.37363 -11.00611 -10.86538 -10.39650 -9.20926 -8.67831 -8.01227 -6.03155 1.43319 1.47158 1.54525 2.53807 3.25227 3.37165 3.69426 3.87362 4.14788 4.17602 4.27957 4.46553 4.48341 4.56627 4.63536 4.73312 4.77249 4.95028 4.99333 5.06055 5.13709 5.16444 5.27963 5.30296 5.42898 5.47910 5.58143 5.87382 6.01898 6.42707 6.49089 6.66227 6.76242 6.81176 7.13399 7.61537 9.11268 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.010324 C = 0.009338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.984116 B = 2711.588511 C = 2997.689806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.096 3.904 3 H 0.083 0.917 4 C 0.038 3.962 5 C -0.480 4.480 6 H 0.067 0.933 7 C -0.013 4.013 8 N -0.948 5.948 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.502 5.502 14 C 0.038 3.962 15 C -0.131 4.131 16 C -0.113 4.113 17 C 0.062 3.938 18 H 0.054 0.946 19 C 0.087 3.913 20 N -0.850 5.850 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.045 0.955 24 H -0.016 1.016 25 H -0.015 1.015 26 H 0.255 0.745 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.342 0.658 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 4.873 -14.823 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.013 4.013 3 H 0.101 0.899 4 C 0.001 3.999 5 C -0.519 4.519 6 H 0.085 0.915 7 C -0.208 4.208 8 N -0.591 5.591 9 Si 0.784 3.216 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.225 5.225 14 C -0.090 4.090 15 C -0.169 4.169 16 C -0.152 4.152 17 C -0.047 4.047 18 H 0.072 0.928 19 C -0.044 4.044 20 N -0.381 5.381 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.002 0.998 25 H 0.003 0.997 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.156 0.844 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.792 4.080 -14.243 15.571 hybrid contribution -0.148 0.500 0.163 0.547 sum -4.940 4.580 -14.080 15.609 Atomic orbital electron populations 1.22494 0.98374 1.01174 1.01624 1.21731 0.90689 0.98465 0.90368 0.89924 1.19027 0.95511 0.93628 0.91743 1.21560 0.93152 1.30978 1.06178 0.91504 1.25878 1.02652 0.96191 0.96062 1.70114 1.36877 1.38827 1.13332 0.85618 0.81045 0.78218 0.76724 1.19536 1.21707 1.20107 1.63372 1.57058 1.00914 1.01206 1.22743 0.96636 0.92343 0.97244 1.22750 0.99387 1.00194 0.94598 1.22675 1.01082 0.94590 0.96834 1.22782 0.96227 0.95352 0.90335 0.92769 1.21677 0.97227 0.94450 0.91038 1.58503 1.12407 1.28472 1.38754 0.92794 0.91471 0.93631 0.99825 0.99675 0.93683 0.93911 0.94082 0.90030 0.90927 0.88758 0.90930 0.93869 0.92358 0.84449 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.15 8.57 71.98 0.62 -5.54 16 2 C 0.10 4.01 2.06 44.91 0.09 4.11 16 3 H 0.08 3.48 5.90 -2.39 -0.01 3.46 16 4 C 0.04 2.08 4.36 29.85 0.13 2.21 16 5 C -0.48 -28.38 8.84 25.60 0.23 -28.16 16 6 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 7 C -0.01 -0.81 5.46 84.65 0.46 -0.35 16 8 N -0.95 -60.69 13.29 21.45 0.28 -60.40 16 9 Si 0.96 47.79 29.54 68.60 2.03 49.81 16 10 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 N -0.50 -19.16 4.39 -835.66 -3.67 -22.83 16 14 C 0.04 1.41 5.56 86.65 0.48 1.89 16 15 C -0.13 -3.37 6.94 31.78 0.22 -3.15 16 16 C -0.11 -2.63 6.49 31.98 0.21 -2.42 16 17 C 0.06 1.75 2.52 45.38 0.11 1.87 16 18 H 0.05 1.47 5.92 -2.39 -0.01 1.45 16 19 C 0.09 2.32 6.57 86.30 0.57 2.89 16 20 N -0.85 -24.74 8.12 -186.72 -1.52 -26.26 16 21 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.07 1.93 6.18 -2.39 -0.01 1.92 16 23 H 0.04 1.62 6.26 -2.39 -0.01 1.60 16 24 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 25 H -0.02 -0.90 6.75 -2.39 -0.02 -0.91 16 26 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.04 1.62 4.83 -2.38 -0.01 1.61 16 29 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 1.64 8.14 -2.38 -0.02 1.63 16 32 H 0.07 1.71 7.97 -2.39 -0.02 1.70 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.71 8.03 -2.38 -0.02 1.69 16 35 H 0.34 8.51 9.08 -89.70 -0.81 7.69 16 36 H 0.34 9.03 8.09 -89.69 -0.73 8.31 16 Total: -1.00 -68.90 276.07 -0.23 -69.13 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -0.47 Total: 17.20 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 3.12 Total: -26.66 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -4.90 Total: -109.49 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.81 kcal Total: -68.90 -0.23 -69.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.267 kcal (2) G-P(sol) polarization free energy of solvation -68.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds