Wall clock time and date at job start Mon Mar 30 2020 03:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09010 * 109.47477 * 2 1 4 4 C 1.53005 * 109.47388 * 240.00108 * 2 1 3 5 5 C 1.50695 * 109.47505 * 175.68714 * 4 2 1 6 6 H 1.08001 * 119.99980 * 355.24502 * 5 4 2 7 7 C 1.37869 * 120.00217 * 175.24657 * 5 4 2 8 8 N 1.31513 * 120.00310 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99938 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47317 * 89.99947 * 9 7 5 11 11 H 1.48497 * 109.47322 * 210.00454 * 9 7 5 12 12 H 1.48506 * 109.47043 * 330.00205 * 9 7 5 13 13 N 1.46900 * 109.47495 * 120.00057 * 2 1 3 14 14 C 1.47901 * 110.99857 * 65.54269 * 13 2 1 15 15 C 1.53993 * 107.06073 * 214.15712 * 14 13 2 16 16 C 1.54597 * 105.13808 * 1.23029 * 15 14 13 17 17 C 1.48533 * 110.99846 * 308.15160 * 13 2 1 18 18 H 1.09002 * 110.66961 * 41.28177 * 17 13 2 19 19 C 1.53005 * 110.66653 * 278.14966 * 17 13 2 20 20 N 1.46900 * 109.46937 * 54.11619 * 19 17 13 21 21 H 1.09002 * 109.47241 * 187.68146 * 1 2 3 22 22 H 1.08999 * 109.47175 * 307.67835 * 1 2 3 23 23 H 1.08998 * 109.47510 * 67.67422 * 1 2 3 24 24 H 1.09003 * 109.46494 * 55.68767 * 4 2 1 25 25 H 1.08997 * 109.46770 * 295.69527 * 4 2 1 26 26 H 0.97003 * 120.00184 * 179.97438 * 8 7 5 27 27 H 1.09007 * 109.91698 * 333.51230 * 14 13 2 28 28 H 1.09005 * 109.91403 * 94.80464 * 14 13 2 29 29 H 1.09006 * 110.30476 * 120.14206 * 15 14 13 30 30 H 1.08994 * 110.30865 * 242.20826 * 15 14 13 31 31 H 1.09000 * 110.72508 * 140.31403 * 16 15 14 32 32 H 1.09006 * 110.71994 * 263.59732 * 16 15 14 33 33 H 1.09001 * 109.47005 * 174.11618 * 19 17 13 34 34 H 1.08999 * 109.46996 * 294.11507 * 19 17 13 35 35 H 1.00900 * 110.99932 * 161.90234 * 20 19 17 36 36 H 1.00900 * 111.00157 * 285.86130 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5432 -0.6294 -1.3039 6 1 4.0755 -0.0444 -0.5685 7 6 4.2389 -1.2921 -2.2926 8 7 5.5507 -1.2124 -2.3400 9 14 3.3182 -2.3046 -3.5642 10 1 2.9748 -1.4462 -4.7263 11 1 4.1753 -3.4299 -4.0160 12 1 2.0723 -2.8426 -2.9610 13 7 2.0197 -0.6925 1.1994 14 6 1.6574 -2.1261 1.1687 15 6 1.3870 -2.5550 2.6228 16 6 1.5870 -1.2743 3.4653 17 6 1.3895 -0.1418 2.4265 18 1 0.3289 0.0487 2.2621 19 6 2.1055 1.1336 2.8755 20 7 2.1506 2.0884 1.7600 21 1 -0.3634 -1.0185 0.1374 22 1 -0.3633 0.6281 0.8133 23 1 -0.3634 0.3904 -0.9506 24 1 1.6149 -0.2539 -2.1375 25 1 1.7410 -1.7687 -1.2115 26 1 6.0402 -1.6790 -3.0354 27 1 0.7604 -2.2697 0.5663 28 1 2.4816 -2.7086 0.7570 29 1 0.3649 -2.9197 2.7257 30 1 2.0953 -3.3251 2.9280 31 1 0.8369 -1.2100 4.2535 32 1 2.5926 -1.2418 3.8848 33 1 1.5663 1.5776 3.7123 34 1 3.1214 0.8897 3.1863 35 1 2.3407 3.0224 2.0909 36 1 2.8283 1.8047 1.0684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695789312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:46 Heat of formation + Delta-G solvation = 9.314718 kcal Electronic energy + Delta-G solvation = -15285.937524 eV Core-core repulsion = 12998.028515 eV Total energy + Delta-G solvation = -2287.909009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.22141 -34.30306 -33.76553 -32.08422 -28.83694 -28.43195 -27.51761 -24.01579 -22.71988 -21.07392 -19.80570 -18.31847 -16.68037 -16.41822 -15.32368 -14.56236 -14.18864 -14.10228 -13.58042 -13.05297 -12.97288 -12.31773 -12.12256 -12.04514 -11.74110 -11.38624 -11.12389 -10.92194 -10.81133 -10.51693 -10.41310 -10.11847 -10.08728 -9.52807 -9.27396 -8.95014 -8.40249 -8.31573 -7.40891 -5.89142 -3.82704 3.37208 3.44867 3.47924 4.56412 4.65468 4.80452 5.11083 5.31879 5.34760 5.46754 5.58099 5.66761 5.88181 5.92428 5.96776 6.01754 6.04956 6.13334 6.14781 6.23620 6.39954 6.52960 6.67563 6.71726 6.82387 6.96571 7.19361 7.48866 7.53168 7.82560 7.85778 7.89877 8.08674 8.74474 9.22083 9.74671 11.24826 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032609 B = 0.010329 C = 0.009708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.446054 B = 2710.138375 C = 2883.558117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.083 3.917 3 H 0.101 0.899 4 C -0.016 4.016 5 C -0.487 4.487 6 H 0.077 0.923 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.481 5.481 14 C 0.038 3.962 15 C -0.131 4.131 16 C -0.118 4.118 17 C 0.055 3.945 18 H 0.058 0.942 19 C 0.082 3.918 20 N -0.850 5.850 21 H 0.043 0.957 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.011 0.989 25 H 0.016 0.984 26 H 0.259 0.741 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.328 0.672 36 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.214 1.396 9.944 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.026 4.026 3 H 0.118 0.882 4 C -0.053 4.053 5 C -0.525 4.525 6 H 0.095 0.905 7 C -0.138 4.138 8 N -0.549 5.549 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.204 5.204 14 C -0.090 4.090 15 C -0.169 4.169 16 C -0.157 4.157 17 C -0.054 4.054 18 H 0.076 0.924 19 C -0.050 4.050 20 N -0.383 5.383 21 H 0.062 0.938 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.139 0.861 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.233 1.194 9.707 13.450 hybrid contribution -0.319 -0.643 -0.594 0.932 sum -9.553 0.551 9.113 13.214 Atomic orbital electron populations 1.22494 1.00061 1.00373 1.01205 1.22020 0.90033 0.99953 0.90572 0.88152 1.19812 0.97877 0.95442 0.92170 1.21034 0.89309 1.29794 1.12392 0.90498 1.25004 0.94641 0.96595 0.97557 1.69912 1.06129 1.44469 1.34437 0.86913 0.80173 0.80476 0.82429 1.20632 1.21712 1.19317 1.64897 1.53401 1.01139 1.00993 1.22791 1.00125 0.91348 0.94715 1.22408 1.00633 0.97730 0.96125 1.22483 1.01534 0.94630 0.97041 1.22932 0.97289 0.93562 0.91589 0.92429 1.21595 0.98478 0.92304 0.92578 1.59000 1.59311 1.04612 1.15395 0.93787 0.92877 0.92970 0.97103 0.96568 0.93143 0.94074 0.90006 0.92492 0.91566 0.92071 0.91110 0.92208 0.94929 0.86077 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.27 37.15 0.31 -2.88 16 2 C 0.08 1.66 1.96 -67.71 -0.13 1.53 16 3 H 0.10 2.06 4.82 -51.92 -0.25 1.81 16 4 C -0.02 -0.37 3.29 -27.88 -0.09 -0.47 16 5 C -0.49 -13.73 9.37 -34.45 -0.32 -14.06 16 6 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 9 Si 0.87 22.15 27.57 -169.99 -4.69 17.46 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.59 6.41 56.52 0.36 -6.22 16 13 N -0.48 -9.15 4.64 -214.72 -1.00 -10.15 16 14 C 0.04 0.70 5.02 -2.75 -0.01 0.69 16 15 C -0.13 -1.90 6.93 -25.37 -0.18 -2.08 16 16 C -0.12 -1.63 6.50 -24.87 -0.16 -1.79 16 17 C 0.06 0.87 2.55 -65.78 -0.17 0.70 16 18 H 0.06 0.92 5.53 -51.93 -0.29 0.63 16 19 C 0.08 1.18 6.61 -3.82 -0.03 1.15 16 20 N -0.85 -12.61 8.01 -10.37 -0.08 -12.70 16 21 H 0.04 0.75 6.09 -51.93 -0.32 0.43 16 22 H 0.05 0.87 6.40 -51.93 -0.33 0.53 16 23 H 0.05 0.89 8.13 -51.93 -0.42 0.46 16 24 H 0.01 0.26 7.81 -51.93 -0.41 -0.14 16 25 H 0.02 0.40 5.30 -51.93 -0.28 0.12 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.04 0.76 5.32 -51.93 -0.28 0.48 16 28 H 0.08 1.70 8.13 -51.93 -0.42 1.28 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.49 7.98 -51.93 -0.41 0.08 16 35 H 0.33 4.03 9.08 -39.29 -0.36 3.67 16 36 H 0.36 6.20 6.90 -39.29 -0.27 5.93 16 LS Contribution 269.07 15.07 4.05 4.05 Total: -1.00 -30.18 269.07 -7.55 -37.73 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.73 Total: 6.66 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -0.88 Total: -15.50 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.31 Total: -50.41 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.69 Total: 17.46 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.18 -7.55 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.042 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds