Wall clock time and date at job start Mon Mar 30 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09010 * 109.47477 * 2 1 4 4 C 1.53005 * 109.47388 * 240.00108 * 2 1 3 5 5 C 1.50695 * 109.47505 * 175.68714 * 4 2 1 6 6 H 1.08001 * 119.99980 * 355.24502 * 5 4 2 7 7 C 1.37869 * 120.00217 * 175.24657 * 5 4 2 8 8 N 1.31513 * 120.00310 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99938 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47317 * 89.99947 * 9 7 5 11 11 H 1.48497 * 109.47322 * 210.00454 * 9 7 5 12 12 H 1.48506 * 109.47043 * 330.00205 * 9 7 5 13 13 N 1.46900 * 109.47495 * 120.00057 * 2 1 3 14 14 C 1.47901 * 110.99857 * 65.54269 * 13 2 1 15 15 C 1.53993 * 107.06073 * 214.15712 * 14 13 2 16 16 C 1.54597 * 105.13808 * 1.23029 * 15 14 13 17 17 C 1.48533 * 110.99846 * 308.15160 * 13 2 1 18 18 H 1.09002 * 110.66961 * 41.28177 * 17 13 2 19 19 C 1.53005 * 110.66653 * 278.14966 * 17 13 2 20 20 N 1.46900 * 109.46937 * 54.11619 * 19 17 13 21 21 H 1.09002 * 109.47241 * 187.68146 * 1 2 3 22 22 H 1.08999 * 109.47175 * 307.67835 * 1 2 3 23 23 H 1.08998 * 109.47510 * 67.67422 * 1 2 3 24 24 H 1.09003 * 109.46494 * 55.68767 * 4 2 1 25 25 H 1.08997 * 109.46770 * 295.69527 * 4 2 1 26 26 H 0.97003 * 120.00184 * 179.97438 * 8 7 5 27 27 H 1.09007 * 109.91698 * 333.51230 * 14 13 2 28 28 H 1.09005 * 109.91403 * 94.80464 * 14 13 2 29 29 H 1.09006 * 110.30476 * 120.14206 * 15 14 13 30 30 H 1.08994 * 110.30865 * 242.20826 * 15 14 13 31 31 H 1.09000 * 110.72508 * 140.31403 * 16 15 14 32 32 H 1.09006 * 110.71994 * 263.59732 * 16 15 14 33 33 H 1.09001 * 109.47005 * 174.11618 * 19 17 13 34 34 H 1.08999 * 109.46996 * 294.11507 * 19 17 13 35 35 H 1.00900 * 110.99932 * 161.90234 * 20 19 17 36 36 H 1.00900 * 111.00157 * 285.86130 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5432 -0.6294 -1.3039 6 1 4.0755 -0.0444 -0.5685 7 6 4.2389 -1.2921 -2.2926 8 7 5.5507 -1.2124 -2.3400 9 14 3.3182 -2.3046 -3.5642 10 1 2.9748 -1.4462 -4.7263 11 1 4.1753 -3.4299 -4.0160 12 1 2.0723 -2.8426 -2.9610 13 7 2.0197 -0.6925 1.1994 14 6 1.6574 -2.1261 1.1687 15 6 1.3870 -2.5550 2.6228 16 6 1.5870 -1.2743 3.4653 17 6 1.3895 -0.1418 2.4265 18 1 0.3289 0.0487 2.2621 19 6 2.1055 1.1336 2.8755 20 7 2.1506 2.0884 1.7600 21 1 -0.3634 -1.0185 0.1374 22 1 -0.3633 0.6281 0.8133 23 1 -0.3634 0.3904 -0.9506 24 1 1.6149 -0.2539 -2.1375 25 1 1.7410 -1.7687 -1.2115 26 1 6.0402 -1.6790 -3.0354 27 1 0.7604 -2.2697 0.5663 28 1 2.4816 -2.7086 0.7570 29 1 0.3649 -2.9197 2.7257 30 1 2.0953 -3.3251 2.9280 31 1 0.8369 -1.2100 4.2535 32 1 2.5926 -1.2418 3.8848 33 1 1.5663 1.5776 3.7123 34 1 3.1214 0.8897 3.1863 35 1 2.3407 3.0224 2.0909 36 1 2.8283 1.8047 1.0684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:45 Heat of formation + Delta-G solvation = -13.106504 kcal Electronic energy + Delta-G solvation = -15286.909782 eV Core-core repulsion = 12998.028515 eV Total energy + Delta-G solvation = -2288.881266 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59060 -35.92788 -34.98989 -34.12841 -30.46122 -29.79588 -29.09722 -25.33513 -24.58687 -22.45807 -21.12948 -19.82078 -18.77642 -17.82137 -16.74729 -16.15476 -15.76356 -15.41361 -14.99670 -14.74835 -14.35457 -14.10818 -13.75405 -13.60249 -13.25842 -12.81912 -12.62522 -12.41611 -12.18916 -12.03847 -11.93162 -11.66607 -11.46507 -11.36074 -11.20295 -10.75261 -10.65978 -9.53540 -8.81963 -8.16738 -6.14381 1.35075 1.36753 1.47198 2.41610 3.15585 3.35060 3.62313 3.91507 4.08086 4.18335 4.27149 4.48324 4.52526 4.55850 4.68854 4.75383 4.79718 4.85746 5.00980 5.06079 5.07733 5.15017 5.18308 5.24610 5.31762 5.37389 5.47522 5.75909 5.80286 6.25404 6.41435 6.44646 6.62273 6.71717 6.93194 7.46222 9.00380 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032609 B = 0.010329 C = 0.009708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.446054 B = 2710.138375 C = 2883.558117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.086 3.914 3 H 0.094 0.906 4 C -0.012 4.012 5 C -0.481 4.481 6 H 0.039 0.961 7 C -0.001 4.001 8 N -0.957 5.957 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.253 1.253 13 N -0.506 5.506 14 C 0.035 3.965 15 C -0.124 4.124 16 C -0.112 4.112 17 C 0.055 3.945 18 H 0.063 0.937 19 C 0.082 3.918 20 N -0.853 5.853 21 H 0.048 0.952 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.012 0.988 25 H 0.013 0.987 26 H 0.260 0.740 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.020 0.980 35 H 0.342 0.658 36 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.626 1.183 10.893 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 H 0.111 0.889 4 C -0.049 4.049 5 C -0.520 4.520 6 H 0.057 0.943 7 C -0.196 4.196 8 N -0.600 5.600 9 Si 0.764 3.236 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.177 1.177 13 N -0.230 5.230 14 C -0.093 4.093 15 C -0.162 4.162 16 C -0.150 4.150 17 C -0.054 4.054 18 H 0.081 0.919 19 C -0.049 4.049 20 N -0.385 5.385 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.038 0.962 35 H 0.155 0.845 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.673 1.000 10.680 15.853 hybrid contribution 0.486 -0.510 -0.825 1.084 sum -11.186 0.491 9.856 14.917 Atomic orbital electron populations 1.22354 0.97564 1.01024 1.02060 1.21833 0.91915 0.99020 0.89472 0.88855 1.19757 0.94889 0.95794 0.94499 1.21242 0.91579 1.28277 1.10863 0.94284 1.25870 0.95407 0.98204 1.00089 1.70070 1.07989 1.46172 1.35730 0.85839 0.79224 0.78825 0.79753 1.19602 1.21599 1.17745 1.64787 1.54762 1.01593 1.01873 1.22737 0.98443 0.90788 0.97343 1.22376 1.02132 0.98289 0.93403 1.22490 1.02365 0.93071 0.97079 1.23050 0.97290 0.94563 0.90459 0.91901 1.21661 0.98132 0.92037 0.93095 1.58973 1.58548 1.05639 1.15350 0.93345 0.91335 0.92613 0.96965 0.96861 0.93161 0.94144 0.93837 0.90155 0.91189 0.88847 0.91627 0.89295 0.96204 0.84529 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.58 8.27 71.98 0.60 -4.98 16 2 C 0.09 3.41 1.96 44.91 0.09 3.50 16 3 H 0.09 3.83 4.82 -2.38 -0.01 3.82 16 4 C -0.01 -0.57 3.29 29.85 0.10 -0.47 16 5 C -0.48 -27.87 9.37 25.60 0.24 -27.63 16 6 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 7 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 8 N -0.96 -61.47 13.96 21.44 0.30 -61.17 16 9 Si 0.94 46.00 27.57 68.60 1.89 47.89 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 12 H -0.25 -11.70 6.41 99.48 0.64 -11.06 16 13 N -0.51 -19.00 4.64 -833.23 -3.87 -22.87 16 14 C 0.04 1.26 5.02 86.45 0.43 1.70 16 15 C -0.12 -3.31 6.93 31.47 0.22 -3.09 16 16 C -0.11 -2.74 6.50 31.80 0.21 -2.53 16 17 C 0.05 1.59 2.55 45.26 0.12 1.71 16 18 H 0.06 1.78 5.53 -2.39 -0.01 1.77 16 19 C 0.08 2.20 6.61 86.30 0.57 2.77 16 20 N -0.85 -24.40 8.01 -186.71 -1.50 -25.90 16 21 H 0.05 1.52 6.09 -2.39 -0.01 1.51 16 22 H 0.07 2.02 6.40 -2.39 -0.02 2.01 16 23 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 24 H 0.01 0.58 7.81 -2.39 -0.02 0.56 16 25 H 0.01 0.64 5.30 -2.39 -0.01 0.63 16 26 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 27 H 0.04 1.44 5.32 -2.38 -0.01 1.42 16 28 H 0.04 1.86 8.13 -2.38 -0.02 1.84 16 29 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.68 7.93 -2.38 -0.02 1.66 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.02 0.58 7.98 -2.39 -0.02 0.56 16 35 H 0.34 7.95 9.08 -89.69 -0.81 7.14 16 36 H 0.34 11.97 6.90 -89.69 -0.62 11.36 16 Total: -1.00 -66.03 269.07 -0.57 -66.60 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.43 Total: 24.06 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 3.03 Total: -28.62 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -5.06 Total: -109.94 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.89 Total: 47.89 kcal Total: -66.03 -0.57 -66.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.497 kcal (2) G-P(sol) polarization free energy of solvation -66.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds