Wall clock time and date at job start Mon Mar 30 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46704 * 2 1 4 4 C 1.52993 * 109.47216 * 240.00473 * 2 1 3 5 5 C 1.50710 * 109.47208 * 174.99556 * 4 2 1 6 6 H 1.08001 * 119.99678 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00179 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00047 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99877 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47054 * 89.99863 * 9 7 5 11 11 H 1.48497 * 109.46981 * 209.99959 * 9 7 5 12 12 H 1.48502 * 109.47179 * 329.99939 * 9 7 5 13 13 N 1.46901 * 109.47561 * 119.99730 * 2 1 3 14 14 C 1.46890 * 111.00323 * 263.95590 * 13 2 1 15 15 C 1.52999 * 110.27599 * 59.35776 * 14 13 2 16 16 C 1.54600 * 110.30934 * 297.27140 * 14 13 2 17 17 C 1.55105 * 102.84444 * 219.18800 * 16 14 13 18 18 N 1.48531 * 103.28581 * 37.30270 * 17 16 14 19 19 C 1.47902 * 105.82195 * 320.84731 * 18 17 16 20 20 H 1.08995 * 109.47495 * 294.83146 * 1 2 3 21 21 H 1.08994 * 109.47419 * 54.83943 * 1 2 3 22 22 H 1.09008 * 109.46834 * 174.83485 * 1 2 3 23 23 H 1.08999 * 109.47067 * 294.99065 * 4 2 1 24 24 H 1.09006 * 109.47688 * 54.99883 * 4 2 1 25 25 H 0.97003 * 120.00399 * 180.02562 * 8 7 5 26 26 H 1.00898 * 110.99420 * 139.99358 * 13 2 1 27 27 H 1.08999 * 109.46904 * 54.01200 * 15 14 13 28 28 H 1.09002 * 109.47407 * 174.00524 * 15 14 13 29 29 H 1.08995 * 109.47340 * 294.01150 * 15 14 13 30 30 H 1.09000 * 110.72325 * 337.48436 * 16 14 13 31 31 H 1.08998 * 110.72563 * 100.77052 * 16 14 13 32 32 H 1.09000 * 110.58977 * 278.86830 * 17 16 14 33 33 H 1.09002 * 110.82527 * 155.84809 * 17 16 14 34 34 H 1.00899 * 110.99936 * 200.33698 * 18 17 16 35 35 H 1.08996 * 109.91580 * 265.97756 * 19 18 17 36 36 H 1.08997 * 109.92096 * 144.68151 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5420 -0.6147 -1.3128 6 1 4.0789 -0.0852 -0.5396 7 6 4.2306 -1.1932 -2.3579 8 7 5.5412 -1.1007 -2.4130 9 14 3.3018 -2.1095 -3.6947 10 1 2.9399 -1.1653 -4.7823 11 1 4.1607 -3.1899 -4.2426 12 1 2.0663 -2.7019 -3.1221 13 7 2.0198 -0.6924 1.1994 14 6 2.3314 0.2645 2.2694 15 6 1.0846 1.0701 2.6400 16 6 3.4704 1.2118 1.8271 17 6 4.3146 1.3628 3.1195 18 7 4.2580 0.0075 3.7246 19 6 2.8771 -0.4746 3.5053 20 1 -0.3634 0.4315 0.9326 21 1 -0.3634 0.5918 -0.8401 22 1 -0.3633 -1.0236 -0.0925 23 1 1.7518 -1.7714 -1.2056 24 1 1.6054 -0.2616 -2.1370 25 1 6.0257 -1.5074 -3.1485 26 1 2.8205 -1.2670 0.9835 27 1 0.2700 0.3877 2.8827 28 1 1.3015 1.6986 3.5037 29 1 0.7939 1.6978 1.7977 30 1 4.0616 0.7588 1.0313 31 1 3.0701 2.1751 1.5113 32 1 3.8672 2.1006 3.7856 33 1 5.3428 1.6351 2.8811 34 1 4.4771 0.0416 4.7089 35 1 2.2618 -0.2471 4.3758 36 1 2.8835 -1.5491 3.3225 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695789609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:25 Heat of formation + Delta-G solvation = -4.676810 kcal Electronic energy + Delta-G solvation = -15117.480708 eV Core-core repulsion = 12828.964980 eV Total energy + Delta-G solvation = -2288.515727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19538 -35.72206 -32.71013 -31.28509 -28.96735 -28.46951 -27.73767 -24.97063 -22.62463 -21.42283 -19.55878 -18.56293 -16.76817 -16.26481 -15.52629 -14.69236 -14.32821 -14.01950 -13.06765 -12.82054 -12.63896 -12.27933 -12.12992 -12.11933 -11.85786 -11.60035 -11.55744 -11.19567 -10.98999 -10.75074 -10.47496 -10.28266 -10.16007 -9.67448 -9.38651 -9.08544 -8.53334 -8.27572 -7.61377 -6.03345 -4.02076 3.32021 3.40072 3.44733 4.46402 4.50928 4.76468 4.98718 5.23367 5.31441 5.41696 5.49081 5.61984 5.82553 5.88525 5.93280 6.01292 6.11597 6.13366 6.19615 6.33101 6.40871 6.42401 6.54531 6.68383 6.78010 6.87178 7.04883 7.21223 7.34005 7.53076 7.79781 7.99033 8.30866 8.52982 9.01454 9.59209 11.09096 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032779 B = 0.010094 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.995560 B = 2773.276716 C = 3337.238663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.095 3.905 3 H 0.043 0.957 4 C -0.022 4.022 5 C -0.525 4.525 6 H 0.077 0.923 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.671 5.671 14 C 0.107 3.893 15 C -0.133 4.133 16 C -0.156 4.156 17 C 0.041 3.959 18 N -0.670 5.670 19 C 0.050 3.950 20 H 0.050 0.950 21 H 0.043 0.957 22 H 0.050 0.950 23 H 0.023 0.977 24 H 0.015 0.985 25 H 0.262 0.738 26 H 0.361 0.639 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.330 0.670 35 H 0.038 0.962 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 3.860 10.118 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 H 0.061 0.939 4 C -0.059 4.059 5 C -0.563 4.563 6 H 0.094 0.906 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.305 5.305 14 C 0.014 3.986 15 C -0.191 4.191 16 C -0.195 4.195 17 C -0.089 4.089 18 N -0.298 5.298 19 C -0.079 4.079 20 H 0.068 0.932 21 H 0.062 0.938 22 H 0.070 0.930 23 H 0.041 0.959 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.183 0.817 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.056 0.944 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.206 3.273 9.689 12.511 hybrid contribution 0.000 0.510 -0.511 0.722 sum -7.206 3.783 9.178 12.267 Atomic orbital electron populations 1.22032 0.96926 1.01166 1.00091 1.21365 0.93019 0.96708 0.90330 0.93885 1.19861 0.97121 0.96106 0.92845 1.21199 0.89813 1.35280 1.09992 0.90560 1.25005 0.94653 0.95688 0.97829 1.69916 1.06540 1.45221 1.32178 0.86799 0.80320 0.79933 0.82334 1.20525 1.21523 1.18938 1.60742 1.40091 1.21748 1.07948 1.21683 0.93148 0.91473 0.92263 1.21992 0.97477 0.99169 1.00477 1.23460 0.97705 1.00265 0.98089 1.22993 1.00541 0.89579 0.95739 1.63060 1.25159 1.22570 1.19042 1.22722 0.88115 1.01035 0.96048 0.93155 0.93793 0.93039 0.95895 0.96686 0.92793 0.81689 0.91964 0.93546 0.92218 0.88458 0.91754 0.94973 0.90455 0.85511 0.94364 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.14 37.16 0.34 -2.10 16 2 C 0.10 1.89 1.85 -67.72 -0.13 1.76 16 3 H 0.04 0.89 6.19 -51.93 -0.32 0.56 16 4 C -0.02 -0.51 3.55 -27.88 -0.10 -0.61 16 5 C -0.53 -14.43 8.67 -34.43 -0.30 -14.72 16 6 H 0.08 2.22 5.60 -52.49 -0.29 1.93 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 9 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 13 N -0.67 -12.68 5.86 -91.69 -0.54 -13.21 16 14 C 0.11 1.74 0.84 -130.25 -0.11 1.63 16 15 C -0.13 -1.87 6.77 37.16 0.25 -1.62 16 16 C -0.16 -2.69 4.90 -24.78 -0.12 -2.81 16 17 C 0.04 0.61 7.55 -1.81 -0.01 0.59 16 18 N -0.67 -9.98 7.51 -109.99 -0.83 -10.81 16 19 C 0.05 0.75 6.92 -2.75 -0.02 0.73 16 20 H 0.05 0.76 5.29 -51.93 -0.27 0.49 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 23 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 24 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.36 7.80 7.26 -39.29 -0.29 7.51 16 27 H 0.06 0.85 7.63 -51.93 -0.40 0.45 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.86 6.27 -51.93 -0.33 0.53 16 30 H 0.10 2.09 5.71 -51.93 -0.30 1.79 16 31 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.33 4.01 8.92 -39.29 -0.35 3.66 16 35 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 36 H 0.08 1.36 7.91 -51.93 -0.41 0.95 16 LS Contribution 271.15 15.07 4.09 4.09 Total: -1.00 -29.06 271.15 -7.27 -36.33 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.80 Total: 8.41 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.29 Total: -15.24 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.59 Total: -50.71 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.06 -7.27 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.654 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds