Wall clock time and date at job start Mon Mar 30 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46704 * 2 1 4 4 C 1.52993 * 109.47216 * 240.00473 * 2 1 3 5 5 C 1.50710 * 109.47208 * 174.99556 * 4 2 1 6 6 H 1.08001 * 119.99678 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00179 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00047 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 119.99877 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47054 * 89.99863 * 9 7 5 11 11 H 1.48497 * 109.46981 * 209.99959 * 9 7 5 12 12 H 1.48502 * 109.47179 * 329.99939 * 9 7 5 13 13 N 1.46901 * 109.47561 * 119.99730 * 2 1 3 14 14 C 1.46890 * 111.00323 * 263.95590 * 13 2 1 15 15 C 1.52999 * 110.27599 * 59.35776 * 14 13 2 16 16 C 1.54600 * 110.30934 * 297.27140 * 14 13 2 17 17 C 1.55105 * 102.84444 * 219.18800 * 16 14 13 18 18 N 1.48531 * 103.28581 * 37.30270 * 17 16 14 19 19 C 1.47902 * 105.82195 * 320.84731 * 18 17 16 20 20 H 1.08995 * 109.47495 * 294.83146 * 1 2 3 21 21 H 1.08994 * 109.47419 * 54.83943 * 1 2 3 22 22 H 1.09008 * 109.46834 * 174.83485 * 1 2 3 23 23 H 1.08999 * 109.47067 * 294.99065 * 4 2 1 24 24 H 1.09006 * 109.47688 * 54.99883 * 4 2 1 25 25 H 0.97003 * 120.00399 * 180.02562 * 8 7 5 26 26 H 1.00898 * 110.99420 * 139.99358 * 13 2 1 27 27 H 1.08999 * 109.46904 * 54.01200 * 15 14 13 28 28 H 1.09002 * 109.47407 * 174.00524 * 15 14 13 29 29 H 1.08995 * 109.47340 * 294.01150 * 15 14 13 30 30 H 1.09000 * 110.72325 * 337.48436 * 16 14 13 31 31 H 1.08998 * 110.72563 * 100.77052 * 16 14 13 32 32 H 1.09000 * 110.58977 * 278.86830 * 17 16 14 33 33 H 1.09002 * 110.82527 * 155.84809 * 17 16 14 34 34 H 1.00899 * 110.99936 * 200.33698 * 18 17 16 35 35 H 1.08996 * 109.91580 * 265.97756 * 19 18 17 36 36 H 1.08997 * 109.92096 * 144.68151 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5420 -0.6147 -1.3128 6 1 4.0789 -0.0852 -0.5396 7 6 4.2306 -1.1932 -2.3579 8 7 5.5412 -1.1007 -2.4130 9 14 3.3018 -2.1095 -3.6947 10 1 2.9399 -1.1653 -4.7823 11 1 4.1607 -3.1899 -4.2426 12 1 2.0663 -2.7019 -3.1221 13 7 2.0198 -0.6924 1.1994 14 6 2.3314 0.2645 2.2694 15 6 1.0846 1.0701 2.6400 16 6 3.4704 1.2118 1.8271 17 6 4.3146 1.3628 3.1195 18 7 4.2580 0.0075 3.7246 19 6 2.8771 -0.4746 3.5053 20 1 -0.3634 0.4315 0.9326 21 1 -0.3634 0.5918 -0.8401 22 1 -0.3633 -1.0236 -0.0925 23 1 1.7518 -1.7714 -1.2056 24 1 1.6054 -0.2616 -2.1370 25 1 6.0257 -1.5074 -3.1485 26 1 2.8205 -1.2670 0.9835 27 1 0.2700 0.3877 2.8827 28 1 1.3015 1.6986 3.5037 29 1 0.7939 1.6978 1.7977 30 1 4.0616 0.7588 1.0313 31 1 3.0701 2.1751 1.5113 32 1 3.8672 2.1006 3.7856 33 1 5.3428 1.6351 2.8811 34 1 4.4771 0.0416 4.7089 35 1 2.2618 -0.2471 4.3758 36 1 2.8835 -1.5491 3.3225 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:25 Heat of formation + Delta-G solvation = -26.986672 kcal Electronic energy + Delta-G solvation = -15118.448136 eV Core-core repulsion = 12828.964980 eV Total energy + Delta-G solvation = -2289.483156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.52351 -37.24064 -34.70645 -32.85026 -30.28432 -29.84622 -29.50262 -26.19657 -24.56147 -22.72113 -21.11129 -19.96903 -18.88869 -17.54051 -16.87771 -16.47113 -15.92580 -15.54144 -14.61862 -14.32193 -14.23964 -13.74240 -13.63574 -13.45181 -13.28581 -13.20229 -12.89149 -12.61665 -12.51090 -12.41492 -12.03456 -11.88298 -11.54584 -11.41801 -11.15357 -11.07469 -10.74404 -9.41720 -9.12156 -8.25035 -6.27791 1.34653 1.37436 1.48824 2.37499 3.07535 3.31887 3.42195 3.76629 3.97484 4.12960 4.28374 4.31752 4.43948 4.60735 4.66467 4.75907 4.78304 4.85883 4.92127 4.93912 5.07816 5.10588 5.15096 5.20416 5.29161 5.39459 5.43572 5.57983 5.72986 5.85095 6.32946 6.44420 6.55929 6.62726 6.82308 7.36503 8.90439 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032779 B = 0.010094 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.995560 B = 2773.276716 C = 3337.238663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.100 3.900 3 H 0.031 0.969 4 C -0.019 4.019 5 C -0.522 4.522 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.669 5.669 14 C 0.102 3.898 15 C -0.127 4.127 16 C -0.156 4.156 17 C 0.048 3.952 18 N -0.688 5.688 19 C 0.055 3.945 20 H 0.071 0.929 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.263 0.737 26 H 0.340 0.660 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.348 0.652 35 H 0.068 0.932 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 4.133 11.143 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.010 4.010 3 H 0.049 0.951 4 C -0.056 4.056 5 C -0.560 4.560 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.300 5.300 14 C 0.010 3.990 15 C -0.184 4.184 16 C -0.196 4.196 17 C -0.081 4.081 18 N -0.319 5.319 19 C -0.075 4.075 20 H 0.090 0.910 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.159 0.841 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.165 0.835 35 H 0.086 0.914 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.484 3.563 10.740 14.765 hybrid contribution 0.771 0.474 -0.759 1.181 sum -8.713 4.037 9.981 13.851 Atomic orbital electron populations 1.21952 0.94006 1.01626 1.01802 1.21290 0.95158 0.95396 0.89139 0.95091 1.19824 0.94366 0.96390 0.95053 1.21516 0.92009 1.33749 1.08738 0.93543 1.25906 0.95419 0.96991 1.00591 1.70068 1.08407 1.47111 1.33384 0.85746 0.79339 0.78672 0.79355 1.19603 1.21445 1.17357 1.60879 1.38910 1.22169 1.08078 1.21894 0.94103 0.91139 0.91884 1.21939 0.96157 0.99111 1.01229 1.23333 0.98123 1.00265 0.97871 1.22922 0.99922 0.90368 0.94906 1.62957 1.25530 1.22775 1.20597 1.22662 0.88498 0.99919 0.96376 0.90995 0.92720 0.93054 0.96228 0.96370 0.92810 0.84107 0.91097 0.91217 0.92626 0.93641 0.91324 0.91865 0.91228 0.83515 0.91409 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.14 71.98 0.66 -3.60 16 2 C 0.10 3.89 1.85 44.91 0.08 3.97 16 3 H 0.03 1.28 6.19 -2.39 -0.01 1.26 16 4 C -0.02 -0.87 3.55 29.85 0.11 -0.77 16 5 C -0.52 -29.55 8.67 25.60 0.22 -29.33 16 6 H 0.05 2.87 5.60 -2.91 -0.02 2.85 16 7 C 0.01 0.45 5.47 84.66 0.46 0.92 16 8 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 9 Si 0.94 45.17 27.47 68.60 1.88 47.05 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 13 N -0.67 -25.06 5.86 -444.01 -2.60 -27.66 16 14 C 0.10 3.19 0.84 4.41 0.00 3.19 16 15 C -0.13 -3.14 6.77 71.98 0.49 -2.65 16 16 C -0.16 -5.44 4.90 31.86 0.16 -5.28 16 17 C 0.05 1.37 7.55 86.71 0.65 2.03 16 18 N -0.69 -19.63 7.51 -501.89 -3.77 -23.41 16 19 C 0.05 1.54 6.92 86.45 0.60 2.14 16 20 H 0.07 1.94 5.29 -2.39 -0.01 1.92 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 24 H 0.02 0.84 7.57 -2.38 -0.02 0.82 16 25 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.34 15.13 7.26 -89.70 -0.65 14.48 16 27 H 0.07 1.66 7.63 -2.39 -0.02 1.64 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.43 6.27 -2.39 -0.01 1.41 16 30 H 0.04 2.07 5.71 -2.39 -0.01 2.05 16 31 H 0.07 2.25 7.69 -2.39 -0.02 2.23 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.35 7.70 8.92 -89.69 -0.80 6.91 16 35 H 0.07 1.51 7.68 -2.39 -0.02 1.50 16 36 H 0.07 2.17 7.91 -2.39 -0.02 2.15 16 Total: -1.00 -64.11 271.15 -1.19 -65.30 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.44 Total: 27.68 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 3.43 Total: -29.37 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -6.07 Total: -110.67 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Total: -64.11 -1.19 -65.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.317 kcal (2) G-P(sol) polarization free energy of solvation -64.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds