Wall clock time and date at job start Mon Mar 30 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08999 * 109.46941 * 2 1 4 4 C 1.52994 * 109.47298 * 120.00261 * 2 1 3 5 5 C 1.50694 * 109.47250 * 185.00018 * 4 2 1 6 6 H 1.07998 * 119.99977 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00377 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99763 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00423 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47123 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46751 * 59.99872 * 9 7 5 12 12 H 1.48497 * 109.46854 * 300.00393 * 9 7 5 13 13 N 1.46898 * 109.46598 * 240.00321 * 2 1 3 14 14 C 1.46901 * 111.00126 * 104.19698 * 13 2 1 15 15 C 1.52996 * 110.29149 * 61.55607 * 14 13 2 16 16 C 1.54266 * 110.32223 * 183.68895 * 14 13 2 17 17 C 1.54381 * 105.06037 * 118.89253 * 16 14 13 18 18 N 1.48567 * 104.59369 * 23.85114 * 17 16 14 19 19 C 1.48718 * 104.28774 * 320.57393 * 18 17 16 20 20 H 1.08999 * 109.46867 * 173.47649 * 1 2 3 21 21 H 1.09001 * 109.46917 * 293.47463 * 1 2 3 22 22 H 1.08993 * 109.47039 * 53.47394 * 1 2 3 23 23 H 1.08999 * 109.47098 * 64.99501 * 4 2 1 24 24 H 1.09001 * 109.47091 * 305.00197 * 4 2 1 25 25 H 0.96997 * 119.99610 * 359.97438 * 8 7 5 26 26 H 1.00902 * 111.00708 * 340.23490 * 13 2 1 27 27 H 1.09004 * 109.46695 * 55.01108 * 15 14 13 28 28 H 1.08994 * 109.47101 * 175.00272 * 15 14 13 29 29 H 1.08995 * 109.46992 * 295.00939 * 15 14 13 30 30 H 1.09000 * 110.31830 * 237.78265 * 16 14 13 31 31 H 1.08991 * 110.32462 * 359.89764 * 16 14 13 32 32 H 1.09006 * 110.41224 * 142.62641 * 17 16 14 33 33 H 1.08990 * 110.41277 * 264.95589 * 17 16 14 34 34 H 1.00900 * 110.99988 * 200.96053 * 18 17 16 35 35 H 1.09007 * 110.38721 * 280.63842 * 19 18 17 36 36 H 1.08998 * 110.50873 * 158.14853 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3126 6 1 4.0791 -0.0862 0.5391 7 6 4.2305 -1.1926 2.3581 8 7 3.5765 -1.8370 3.2999 9 14 6.0923 -1.0614 2.4364 10 1 6.5872 -1.7604 3.6496 11 1 6.4855 0.3693 2.4949 12 1 6.6839 -1.6884 1.2273 13 7 2.0196 -0.6924 -1.1995 14 6 2.5122 0.2669 -2.1970 15 6 3.6874 1.0656 -1.6299 16 6 2.9363 -0.4693 -3.4846 17 6 2.0210 0.0979 -4.5910 18 7 1.6056 1.4318 -4.0857 19 6 1.3771 1.2187 -2.6317 20 1 -0.3633 -1.0210 -0.1168 21 1 -0.3633 0.4094 0.9426 22 1 -0.3633 0.6116 -0.8258 23 1 1.7517 -1.7715 1.2055 24 1 1.6055 -0.2618 2.1369 25 1 2.6098 -1.9054 3.2590 26 1 1.3044 -1.2865 -1.5914 27 1 4.4587 0.3789 -1.2810 28 1 4.0987 1.7088 -2.4078 29 1 3.3423 1.6780 -0.7969 30 1 3.9812 -0.2601 -3.7136 31 1 2.7806 -1.5426 -3.3758 32 1 2.5728 0.2004 -5.5254 33 1 1.1521 -0.5447 -4.7320 34 1 0.7621 1.7448 -4.5425 35 1 0.4057 0.7534 -2.4641 36 1 1.4454 2.1632 -2.0920 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695789614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:28 Heat of formation + Delta-G solvation = -5.869464 kcal Electronic energy + Delta-G solvation = -15089.024952 eV Core-core repulsion = 12800.457507 eV Total energy + Delta-G solvation = -2288.567445 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.33977 -35.78228 -32.86151 -31.45683 -29.09512 -28.03968 -26.93510 -25.08259 -22.81094 -21.64630 -19.81955 -18.84876 -16.95795 -16.37340 -15.28766 -14.23157 -14.14950 -13.87032 -13.63703 -13.29810 -12.78780 -12.61963 -12.09268 -12.06783 -11.59715 -11.46641 -11.33224 -11.02398 -10.90864 -10.69452 -10.49258 -10.43000 -10.03048 -9.90275 -9.48135 -8.60483 -8.34283 -8.14207 -7.58235 -6.13731 -3.78415 3.53389 3.56420 3.74026 4.26036 4.69673 4.73006 4.89330 4.96186 5.22738 5.30328 5.54349 5.59807 5.63101 5.73776 5.79863 5.89937 5.95903 5.98732 6.13976 6.23687 6.26288 6.41592 6.50046 6.64669 6.72636 6.88473 6.96949 7.25772 7.41546 7.52320 7.97174 8.08621 8.50128 8.74008 9.12067 9.90149 11.26203 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036678 B = 0.009225 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.219368 B = 3034.414174 C = 3518.643675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.092 3.908 3 H 0.065 0.935 4 C 0.022 3.978 5 C -0.570 4.570 6 H 0.059 0.941 7 C 0.006 3.994 8 N -0.926 5.926 9 Si 1.064 2.936 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.290 1.290 13 N -0.651 5.651 14 C 0.117 3.883 15 C -0.127 4.127 16 C -0.116 4.116 17 C 0.034 3.966 18 N -0.664 5.664 19 C 0.005 3.995 20 H 0.050 0.950 21 H 0.056 0.944 22 H 0.041 0.959 23 H 0.007 0.993 24 H 0.003 0.997 25 H 0.265 0.735 26 H 0.325 0.675 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.329 0.671 35 H 0.040 0.960 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 4.659 -13.380 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.017 4.017 3 H 0.083 0.917 4 C -0.016 4.016 5 C -0.609 4.609 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.564 5.564 9 Si 0.894 3.106 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.216 1.216 13 N -0.280 5.280 14 C 0.025 3.975 15 C -0.184 4.184 16 C -0.154 4.154 17 C -0.096 4.096 18 N -0.292 5.292 19 C -0.126 4.126 20 H 0.069 0.931 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.025 0.975 24 H 0.021 0.979 25 H 0.075 0.925 26 H 0.142 0.858 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.143 0.857 35 H 0.058 0.942 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.049 4.428 -12.165 13.107 hybrid contribution -3.221 0.251 -1.239 3.461 sum -5.270 4.679 -13.405 15.144 Atomic orbital electron populations 1.22628 0.99101 1.00909 1.01058 1.21684 0.89917 0.97962 0.92096 0.91666 1.19231 0.97331 0.94785 0.90214 1.22080 0.91681 1.36996 1.10131 0.92301 1.25724 1.06408 0.94244 0.93199 1.70778 1.10000 1.41056 1.34576 0.83612 0.75193 0.75979 0.75849 1.21166 1.21770 1.21627 1.60702 1.41337 1.20654 1.05333 1.21642 0.94011 0.90660 0.91213 1.21878 0.97525 0.99314 0.99725 1.22427 0.99936 1.00095 0.92970 1.22944 0.98128 0.89759 0.98746 1.63692 1.36323 1.25425 1.03785 1.24032 0.98251 1.00957 0.89398 0.93052 0.92460 0.94049 0.97488 0.97912 0.92476 0.85762 0.90884 0.93052 0.92429 0.90639 0.90554 0.90487 0.94672 0.85663 0.94195 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.09 1.86 1.85 -67.71 -0.13 1.73 16 3 H 0.07 1.36 5.57 -51.93 -0.29 1.07 16 4 C 0.02 0.56 3.96 -27.89 -0.11 0.45 16 5 C -0.57 -16.12 8.84 -34.44 -0.30 -16.43 16 6 H 0.06 1.62 5.15 -52.49 -0.27 1.35 16 7 C 0.01 0.17 5.46 -17.82 -0.10 0.08 16 8 N -0.93 -29.13 13.65 55.43 0.76 -28.37 16 9 Si 1.06 26.20 29.90 -169.99 -5.08 21.11 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.65 -12.10 5.60 -91.66 -0.51 -12.61 16 14 C 0.12 1.89 0.90 -130.22 -0.12 1.78 16 15 C -0.13 -2.25 6.98 37.16 0.26 -1.99 16 16 C -0.12 -1.64 6.37 -25.34 -0.16 -1.80 16 17 C 0.03 0.40 7.47 -2.18 -0.02 0.39 16 18 N -0.66 -8.39 7.62 -109.53 -0.84 -9.22 16 19 C 0.00 0.07 5.45 -2.09 -0.01 0.06 16 20 H 0.05 0.83 8.01 -51.93 -0.42 0.42 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.04 0.60 5.96 -51.93 -0.31 0.29 16 23 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 24 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 25 H 0.26 8.32 7.22 -40.82 -0.29 8.02 16 26 H 0.32 5.53 8.05 -39.29 -0.32 5.21 16 27 H 0.07 1.46 6.86 -51.93 -0.36 1.10 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.08 6.37 -51.93 -0.33 0.75 16 30 H 0.07 1.07 7.71 -51.93 -0.40 0.67 16 31 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.33 3.48 8.92 -39.29 -0.35 3.13 16 35 H 0.04 0.56 5.99 -51.93 -0.31 0.24 16 36 H 0.08 1.16 7.85 -51.93 -0.41 0.75 16 LS Contribution 274.39 15.07 4.14 4.14 Total: -1.00 -30.83 274.39 -7.68 -38.51 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.78 Total: 4.83 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -0.35 Total: -18.39 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.59 Total: -50.20 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -5.08 Total: 21.11 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.83 -7.68 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.641 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds