Wall clock time and date at job start Mon Mar 30 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08999 * 109.46941 * 2 1 4 4 C 1.52994 * 109.47298 * 120.00261 * 2 1 3 5 5 C 1.50694 * 109.47250 * 185.00018 * 4 2 1 6 6 H 1.07998 * 119.99977 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00377 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99763 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00423 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47123 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46751 * 59.99872 * 9 7 5 12 12 H 1.48497 * 109.46854 * 300.00393 * 9 7 5 13 13 N 1.46898 * 109.46598 * 240.00321 * 2 1 3 14 14 C 1.46901 * 111.00126 * 104.19698 * 13 2 1 15 15 C 1.52996 * 110.29149 * 61.55607 * 14 13 2 16 16 C 1.54266 * 110.32223 * 183.68895 * 14 13 2 17 17 C 1.54381 * 105.06037 * 118.89253 * 16 14 13 18 18 N 1.48567 * 104.59369 * 23.85114 * 17 16 14 19 19 C 1.48718 * 104.28774 * 320.57393 * 18 17 16 20 20 H 1.08999 * 109.46867 * 173.47649 * 1 2 3 21 21 H 1.09001 * 109.46917 * 293.47463 * 1 2 3 22 22 H 1.08993 * 109.47039 * 53.47394 * 1 2 3 23 23 H 1.08999 * 109.47098 * 64.99501 * 4 2 1 24 24 H 1.09001 * 109.47091 * 305.00197 * 4 2 1 25 25 H 0.96997 * 119.99610 * 359.97438 * 8 7 5 26 26 H 1.00902 * 111.00708 * 340.23490 * 13 2 1 27 27 H 1.09004 * 109.46695 * 55.01108 * 15 14 13 28 28 H 1.08994 * 109.47101 * 175.00272 * 15 14 13 29 29 H 1.08995 * 109.46992 * 295.00939 * 15 14 13 30 30 H 1.09000 * 110.31830 * 237.78265 * 16 14 13 31 31 H 1.08991 * 110.32462 * 359.89764 * 16 14 13 32 32 H 1.09006 * 110.41224 * 142.62641 * 17 16 14 33 33 H 1.08990 * 110.41277 * 264.95589 * 17 16 14 34 34 H 1.00900 * 110.99988 * 200.96053 * 18 17 16 35 35 H 1.09007 * 110.38721 * 280.63842 * 19 18 17 36 36 H 1.08998 * 110.50873 * 158.14853 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3126 6 1 4.0791 -0.0862 0.5391 7 6 4.2305 -1.1926 2.3581 8 7 3.5765 -1.8370 3.2999 9 14 6.0923 -1.0614 2.4364 10 1 6.5872 -1.7604 3.6496 11 1 6.4855 0.3693 2.4949 12 1 6.6839 -1.6884 1.2273 13 7 2.0196 -0.6924 -1.1995 14 6 2.5122 0.2669 -2.1970 15 6 3.6874 1.0656 -1.6299 16 6 2.9363 -0.4693 -3.4846 17 6 2.0210 0.0979 -4.5910 18 7 1.6056 1.4318 -4.0857 19 6 1.3771 1.2187 -2.6317 20 1 -0.3633 -1.0210 -0.1168 21 1 -0.3633 0.4094 0.9426 22 1 -0.3633 0.6116 -0.8258 23 1 1.7517 -1.7715 1.2055 24 1 1.6055 -0.2618 2.1369 25 1 2.6098 -1.9054 3.2590 26 1 1.3044 -1.2865 -1.5914 27 1 4.4587 0.3789 -1.2810 28 1 4.0987 1.7088 -2.4078 29 1 3.3423 1.6780 -0.7969 30 1 3.9812 -0.2601 -3.7136 31 1 2.7806 -1.5426 -3.3758 32 1 2.5728 0.2004 -5.5254 33 1 1.1521 -0.5447 -4.7320 34 1 0.7621 1.7448 -4.5425 35 1 0.4057 0.7534 -2.4641 36 1 1.4454 2.1632 -2.0920 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:28 Heat of formation + Delta-G solvation = -29.140201 kcal Electronic energy + Delta-G solvation = -15090.034046 eV Core-core repulsion = 12800.457507 eV Total energy + Delta-G solvation = -2289.576540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59687 -37.27667 -34.88135 -32.89997 -30.20937 -29.71044 -28.62414 -26.38479 -24.92609 -22.75532 -21.37333 -20.19361 -18.85462 -17.81545 -16.48823 -15.69889 -15.58168 -15.55161 -15.06976 -14.90626 -14.51468 -14.07226 -13.43805 -13.32303 -13.12942 -12.94129 -12.76793 -12.56658 -12.49397 -12.41335 -12.05486 -11.91515 -11.82481 -11.42851 -11.19072 -10.48954 -10.41536 -9.58068 -9.05072 -8.49887 -6.14688 1.53144 1.62401 1.80091 2.64346 3.11321 3.32664 3.56982 3.74045 3.75910 4.07567 4.12452 4.27514 4.36790 4.45726 4.46196 4.61000 4.81027 4.81705 4.85846 4.95463 5.00314 5.10828 5.12158 5.17836 5.27180 5.32008 5.41867 5.51061 5.71865 6.21767 6.37936 6.40932 6.46716 6.70094 6.82971 7.62850 8.90304 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036678 B = 0.009225 C = 0.007956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.219368 B = 3034.414174 C = 3518.643675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 H 0.058 0.942 4 C 0.023 3.977 5 C -0.573 4.573 6 H 0.065 0.935 7 C -0.053 4.053 8 N -0.955 5.955 9 Si 1.110 2.890 10 H -0.289 1.289 11 H -0.271 1.271 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.113 3.887 15 C -0.122 4.122 16 C -0.116 4.116 17 C 0.041 3.959 18 N -0.667 5.667 19 C 0.015 3.985 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.070 0.930 23 H -0.018 1.018 24 H -0.020 1.020 25 H 0.250 0.750 26 H 0.335 0.665 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.345 0.655 35 H 0.047 0.953 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 5.449 -15.626 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 H 0.076 0.924 4 C -0.015 4.015 5 C -0.612 4.612 6 H 0.083 0.917 7 C -0.247 4.247 8 N -0.595 5.595 9 Si 0.933 3.067 10 H -0.215 1.215 11 H -0.196 1.196 12 H -0.199 1.199 13 N -0.299 5.299 14 C 0.021 3.979 15 C -0.179 4.179 16 C -0.154 4.154 17 C -0.088 4.088 18 N -0.297 5.297 19 C -0.117 4.117 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.089 0.911 23 H 0.000 1.000 24 H -0.002 1.002 25 H 0.060 0.940 26 H 0.154 0.846 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.161 0.839 35 H 0.066 0.934 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.148 5.234 -14.449 15.518 hybrid contribution -3.208 0.010 -0.574 3.258 sum -5.356 5.244 -15.023 16.789 Atomic orbital electron populations 1.22492 0.96219 1.01860 1.02121 1.21327 0.92168 0.96527 0.90482 0.92364 1.19188 0.96198 0.93701 0.92386 1.22513 0.93250 1.35728 1.09685 0.91688 1.27205 1.10655 0.93801 0.93070 1.70916 1.09210 1.43348 1.36049 0.83018 0.70305 0.77165 0.76223 1.21523 1.19618 1.19889 1.60497 1.41927 1.21785 1.05710 1.21678 0.94115 0.90839 0.91298 1.21806 0.97492 0.98883 0.99720 1.22417 1.00491 0.99862 0.92664 1.22936 0.98258 0.89380 0.98272 1.63653 1.37382 1.25914 1.02762 1.23799 0.97473 0.99894 0.90505 0.92584 0.92812 0.91132 1.00006 1.00183 0.94043 0.84628 0.93661 0.91277 0.94097 0.90829 0.90808 0.88846 0.93261 0.83934 0.93440 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.38 8.87 71.99 0.64 -4.74 16 2 C 0.10 4.17 1.85 44.92 0.08 4.25 16 3 H 0.06 2.41 5.57 -2.39 -0.01 2.39 16 4 C 0.02 1.20 3.96 29.84 0.12 1.32 16 5 C -0.57 -32.95 8.84 25.60 0.23 -32.72 16 6 H 0.06 3.60 5.15 -2.91 -0.01 3.58 16 7 C -0.05 -3.14 5.46 84.65 0.46 -2.68 16 8 N -0.96 -61.68 13.65 21.45 0.29 -61.39 16 9 Si 1.11 52.84 29.90 68.60 2.05 54.89 16 10 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 13 N -0.67 -24.22 5.60 -443.90 -2.48 -26.71 16 14 C 0.11 3.45 0.90 4.42 0.00 3.45 16 15 C -0.12 -4.20 6.98 71.98 0.50 -3.70 16 16 C -0.12 -3.01 6.37 31.49 0.20 -2.81 16 17 C 0.04 0.82 7.47 86.45 0.65 1.47 16 18 N -0.67 -14.51 7.62 -500.44 -3.82 -18.32 16 19 C 0.01 0.38 5.45 86.42 0.47 0.85 16 20 H 0.06 1.73 8.01 -2.39 -0.02 1.71 16 21 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.07 1.85 5.96 -2.39 -0.01 1.84 16 23 H -0.02 -1.05 8.01 -2.39 -0.02 -1.07 16 24 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 25 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 26 H 0.33 10.87 8.05 -89.69 -0.72 10.15 16 27 H 0.04 1.79 6.86 -2.39 -0.02 1.77 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.04 1.52 6.37 -2.39 -0.02 1.50 16 30 H 0.07 1.93 7.71 -2.39 -0.02 1.91 16 31 H 0.07 1.95 7.90 -2.39 -0.02 1.93 16 32 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.34 5.93 8.92 -89.69 -0.80 5.13 16 35 H 0.05 1.15 5.99 -2.38 -0.01 1.14 16 36 H 0.07 1.93 7.85 -2.39 -0.02 1.91 16 Total: -1.00 -67.03 274.39 -0.95 -67.98 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.35 Total: 18.86 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 3.35 Total: -35.31 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -6.01 Total: -106.42 kcal Atomic # 14 Polarization: 52.84 SS G_CDS: 2.05 Total: 54.89 kcal Total: -67.03 -0.95 -67.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.844 kcal (2) G-P(sol) polarization free energy of solvation -67.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds