Wall clock time and date at job start Mon Mar 30 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47443 * 2 1 4 4 C 1.52999 * 109.47293 * 239.99943 * 2 1 3 5 5 C 1.50704 * 109.46960 * 175.00217 * 4 2 1 6 6 H 1.07996 * 120.00542 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99707 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00153 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47084 * 269.99814 * 9 7 5 11 11 H 1.48503 * 109.46963 * 29.99901 * 9 7 5 12 12 H 1.48496 * 109.47130 * 149.99693 * 9 7 5 13 13 N 1.46901 * 109.46994 * 119.99853 * 2 1 3 14 14 C 1.46899 * 111.00294 * 263.46269 * 13 2 1 15 15 C 1.52999 * 110.28920 * 60.42958 * 14 13 2 16 16 C 1.54254 * 110.32710 * 182.55957 * 14 13 2 17 17 C 1.54381 * 105.06265 * 118.89480 * 16 14 13 18 18 N 1.48557 * 104.59508 * 23.85271 * 17 16 14 19 19 C 1.48726 * 104.28812 * 320.57477 * 18 17 16 20 20 H 1.08996 * 109.47121 * 185.79377 * 1 2 3 21 21 H 1.08997 * 109.47163 * 305.79568 * 1 2 3 22 22 H 1.09007 * 109.46804 * 65.79335 * 1 2 3 23 23 H 1.08997 * 109.46889 * 55.00191 * 4 2 1 24 24 H 1.08997 * 109.47046 * 294.99883 * 4 2 1 25 25 H 0.97001 * 119.99860 * 180.02562 * 8 7 5 26 26 H 1.00895 * 111.00161 * 27.41969 * 13 2 1 27 27 H 1.08997 * 109.46658 * 54.58805 * 15 14 13 28 28 H 1.08996 * 109.47518 * 174.58769 * 15 14 13 29 29 H 1.09000 * 109.47316 * 294.59079 * 15 14 13 30 30 H 1.09001 * 110.32666 * 237.79104 * 16 14 13 31 31 H 1.09002 * 110.32270 * 359.90140 * 16 14 13 32 32 H 1.09002 * 110.41027 * 142.63437 * 17 16 14 33 33 H 1.09008 * 110.41143 * 264.95690 * 17 16 14 34 34 H 1.00898 * 111.00561 * 200.95567 * 18 17 16 35 35 H 1.08993 * 110.38554 * 280.63876 * 19 18 17 36 36 H 1.08999 * 110.50911 * 158.14452 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0855 -0.5395 7 6 4.2304 -1.1926 -2.3582 8 7 3.5765 -1.8369 -3.2999 9 14 6.0921 -1.0603 -2.4372 10 1 6.4698 0.1624 -3.1905 11 1 6.6417 -0.9827 -1.0598 12 1 6.6446 -2.2553 -3.1241 13 7 2.0196 -0.6925 1.1995 14 6 2.3423 0.2653 2.2655 15 6 1.0966 1.0625 2.6574 16 6 2.9146 -0.4724 3.4934 17 6 4.3386 0.0956 3.6749 18 7 4.2950 1.4304 3.0244 19 6 3.4668 1.2187 1.8073 20 1 -0.3633 -1.0224 0.1037 21 1 -0.3633 0.6011 0.8335 22 1 -0.3633 0.4214 -0.9374 23 1 1.6054 -0.2617 -2.1369 24 1 1.7517 -1.7715 -1.2055 25 1 4.0609 -2.2437 -4.0353 26 1 1.3519 -1.3779 1.5192 27 1 0.2937 0.3747 2.9224 28 1 1.3265 1.6990 3.5118 29 1 0.7822 1.6816 1.8172 30 1 2.3091 -0.2651 4.3758 31 1 2.9544 -1.5454 3.3058 32 1 4.5755 0.1964 4.7341 33 1 5.0694 -0.5458 3.1821 34 1 5.2224 1.7446 2.7809 35 1 4.0609 0.7552 1.0198 36 1 3.0470 2.1635 1.4620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695789621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:33 Heat of formation + Delta-G solvation = -4.232427 kcal Electronic energy + Delta-G solvation = -15113.972859 eV Core-core repulsion = 12825.476402 eV Total energy + Delta-G solvation = -2288.496457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.12943 -35.68462 -32.79989 -31.23090 -28.91802 -27.97961 -27.35453 -25.00231 -23.00418 -21.59823 -19.51306 -18.66022 -16.68354 -15.97808 -15.08297 -14.59104 -14.13027 -13.95934 -13.53177 -13.10511 -12.63245 -12.43324 -11.90192 -11.79876 -11.74333 -11.55153 -11.33600 -11.24319 -10.88730 -10.62528 -10.53381 -10.43572 -10.07413 -9.92090 -9.21523 -8.95595 -8.25092 -8.23226 -7.52970 -5.86540 -3.83791 3.37196 3.43758 3.46433 4.48663 4.55969 4.92396 4.97777 5.07101 5.33582 5.50826 5.60899 5.67180 5.79458 5.86782 5.92738 5.99782 6.03902 6.13668 6.21863 6.27467 6.29299 6.44109 6.47203 6.55742 6.68605 6.97495 7.11109 7.52084 7.64703 7.77205 8.08834 8.11796 8.23086 8.63490 9.21119 9.76754 11.25668 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.011163 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.451807 B = 2507.762189 C = 3253.974650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.486 4.486 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.903 5.903 9 Si 0.886 3.114 10 H -0.284 1.284 11 H -0.277 1.277 12 H -0.289 1.289 13 N -0.654 5.654 14 C 0.110 3.890 15 C -0.168 4.168 16 C -0.113 4.113 17 C 0.039 3.961 18 N -0.671 5.671 19 C 0.041 3.959 20 H 0.050 0.950 21 H 0.044 0.956 22 H 0.055 0.945 23 H 0.015 0.985 24 H 0.017 0.983 25 H 0.256 0.744 26 H 0.329 0.671 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.332 0.668 35 H 0.075 0.925 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.599 4.208 11.803 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.525 4.525 6 H 0.076 0.924 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.715 3.285 10 H -0.210 1.210 11 H -0.202 1.202 12 H -0.215 1.215 13 N -0.284 5.284 14 C 0.018 3.982 15 C -0.227 4.227 16 C -0.151 4.151 17 C -0.090 4.090 18 N -0.299 5.299 19 C -0.088 4.088 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.147 0.853 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.147 0.853 35 H 0.093 0.907 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.430 4.383 11.843 12.860 hybrid contribution 0.725 -0.282 -0.507 0.929 sum -1.705 4.101 11.336 12.175 Atomic orbital electron populations 1.22702 0.99200 1.01043 1.01151 1.21785 0.90154 0.97897 0.92285 0.91971 1.19111 0.96032 0.95500 0.89717 1.21186 0.92026 1.32690 1.06573 0.92373 1.24998 0.97736 0.96041 0.96163 1.69962 1.35056 1.37023 1.12358 0.86696 0.86748 0.77266 0.77820 1.21047 1.20183 1.21512 1.60818 1.48818 1.14665 1.04050 1.21572 0.93812 0.91706 0.91103 1.22639 0.98064 1.00471 1.01574 1.22370 0.95542 1.00349 0.96882 1.22811 0.97051 0.90133 0.99052 1.63747 1.17330 1.25115 1.23706 1.23185 0.95041 0.98336 0.92239 0.93128 0.93665 0.92640 0.96730 0.96500 0.93386 0.85272 0.93298 0.92446 0.92357 0.91779 0.90544 0.91055 0.93912 0.85330 0.90718 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 8.85 37.16 0.33 -2.74 16 2 C 0.09 1.75 1.82 -67.71 -0.12 1.63 16 3 H 0.06 1.27 6.12 -51.93 -0.32 0.95 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.49 -13.53 8.84 -34.44 -0.30 -13.84 16 6 H 0.06 1.58 5.37 -52.49 -0.28 1.30 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 9 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 N -0.65 -12.01 5.52 -91.66 -0.51 -12.52 16 14 C 0.11 1.76 0.89 -130.22 -0.12 1.64 16 15 C -0.17 -2.38 6.88 37.16 0.26 -2.12 16 16 C -0.11 -1.62 6.41 -25.35 -0.16 -1.78 16 17 C 0.04 0.55 7.47 -2.18 -0.02 0.53 16 18 N -0.67 -9.96 7.62 -109.53 -0.84 -10.79 16 19 C 0.04 0.70 5.32 -2.09 -0.01 0.69 16 20 H 0.05 0.83 8.01 -51.93 -0.42 0.41 16 21 H 0.04 0.66 5.52 -51.93 -0.29 0.38 16 22 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.33 5.61 8.26 -39.29 -0.32 5.29 16 27 H 0.05 0.64 7.97 -51.93 -0.41 0.23 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.85 6.05 -51.93 -0.31 0.54 16 30 H 0.06 0.82 7.71 -51.93 -0.40 0.42 16 31 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.33 4.53 8.92 -39.29 -0.35 4.18 16 35 H 0.07 1.52 5.67 -51.93 -0.29 1.22 16 36 H 0.07 1.20 7.59 -51.93 -0.39 0.80 16 LS Contribution 276.18 15.07 4.16 4.16 Total: -1.00 -29.72 276.18 -7.72 -37.44 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.88 Total: 5.29 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.38 Total: -13.91 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.60 Total: -50.04 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.72 -7.72 -37.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.204 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds