Wall clock time and date at job start Mon Mar 30 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47443 * 2 1 4 4 C 1.52999 * 109.47293 * 239.99943 * 2 1 3 5 5 C 1.50704 * 109.46960 * 175.00217 * 4 2 1 6 6 H 1.07996 * 120.00542 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99707 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00153 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47084 * 269.99814 * 9 7 5 11 11 H 1.48503 * 109.46963 * 29.99901 * 9 7 5 12 12 H 1.48496 * 109.47130 * 149.99693 * 9 7 5 13 13 N 1.46901 * 109.46994 * 119.99853 * 2 1 3 14 14 C 1.46899 * 111.00294 * 263.46269 * 13 2 1 15 15 C 1.52999 * 110.28920 * 60.42958 * 14 13 2 16 16 C 1.54254 * 110.32710 * 182.55957 * 14 13 2 17 17 C 1.54381 * 105.06265 * 118.89480 * 16 14 13 18 18 N 1.48557 * 104.59508 * 23.85271 * 17 16 14 19 19 C 1.48726 * 104.28812 * 320.57477 * 18 17 16 20 20 H 1.08996 * 109.47121 * 185.79377 * 1 2 3 21 21 H 1.08997 * 109.47163 * 305.79568 * 1 2 3 22 22 H 1.09007 * 109.46804 * 65.79335 * 1 2 3 23 23 H 1.08997 * 109.46889 * 55.00191 * 4 2 1 24 24 H 1.08997 * 109.47046 * 294.99883 * 4 2 1 25 25 H 0.97001 * 119.99860 * 180.02562 * 8 7 5 26 26 H 1.00895 * 111.00161 * 27.41969 * 13 2 1 27 27 H 1.08997 * 109.46658 * 54.58805 * 15 14 13 28 28 H 1.08996 * 109.47518 * 174.58769 * 15 14 13 29 29 H 1.09000 * 109.47316 * 294.59079 * 15 14 13 30 30 H 1.09001 * 110.32666 * 237.79104 * 16 14 13 31 31 H 1.09002 * 110.32270 * 359.90140 * 16 14 13 32 32 H 1.09002 * 110.41027 * 142.63437 * 17 16 14 33 33 H 1.09008 * 110.41143 * 264.95690 * 17 16 14 34 34 H 1.00898 * 111.00561 * 200.95567 * 18 17 16 35 35 H 1.08993 * 110.38554 * 280.63876 * 19 18 17 36 36 H 1.08999 * 110.50911 * 158.14452 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0855 -0.5395 7 6 4.2304 -1.1926 -2.3582 8 7 3.5765 -1.8369 -3.2999 9 14 6.0921 -1.0603 -2.4372 10 1 6.4698 0.1624 -3.1905 11 1 6.6417 -0.9827 -1.0598 12 1 6.6446 -2.2553 -3.1241 13 7 2.0196 -0.6925 1.1995 14 6 2.3423 0.2653 2.2655 15 6 1.0966 1.0625 2.6574 16 6 2.9146 -0.4724 3.4934 17 6 4.3386 0.0956 3.6749 18 7 4.2950 1.4304 3.0244 19 6 3.4668 1.2187 1.8073 20 1 -0.3633 -1.0224 0.1037 21 1 -0.3633 0.6011 0.8335 22 1 -0.3633 0.4214 -0.9374 23 1 1.6054 -0.2617 -2.1369 24 1 1.7517 -1.7715 -1.2055 25 1 4.0609 -2.2437 -4.0353 26 1 1.3519 -1.3779 1.5192 27 1 0.2937 0.3747 2.9224 28 1 1.3265 1.6990 3.5118 29 1 0.7822 1.6816 1.8172 30 1 2.3091 -0.2651 4.3758 31 1 2.9544 -1.5454 3.3058 32 1 4.5755 0.1964 4.7341 33 1 5.0694 -0.5458 3.1821 34 1 5.2224 1.7446 2.7809 35 1 4.0609 0.7552 1.0198 36 1 3.0470 2.1635 1.4620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695789621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:33 Heat of formation + Delta-G solvation = -26.405276 kcal Electronic energy + Delta-G solvation = -15114.934346 eV Core-core repulsion = 12825.476402 eV Total energy + Delta-G solvation = -2289.457944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43357 -37.17510 -34.79877 -32.78324 -30.12491 -29.36365 -29.22609 -26.25526 -25.00848 -22.88548 -21.02954 -20.03339 -18.50141 -17.61986 -16.61102 -16.22027 -15.64216 -15.46228 -14.88302 -14.41802 -14.28210 -13.87805 -13.51161 -13.31717 -13.20619 -12.98977 -12.89055 -12.67865 -12.47598 -12.38962 -12.05003 -11.91497 -11.63392 -11.41207 -11.03535 -10.95911 -10.47567 -9.51833 -8.98058 -8.08691 -6.12475 1.38341 1.39296 1.49320 2.45690 3.17849 3.27805 3.69254 3.72144 3.88821 4.16419 4.29760 4.42844 4.50482 4.56538 4.60500 4.76060 4.79995 4.86830 4.97117 5.01761 5.07048 5.15608 5.20270 5.27043 5.36437 5.38664 5.58125 5.64211 5.83485 5.93330 6.34759 6.40752 6.56968 6.82973 7.02626 7.52442 9.03767 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.011163 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.451807 B = 2507.762189 C = 3253.974650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 H 0.056 0.944 4 C 0.038 3.962 5 C -0.493 4.493 6 H 0.062 0.938 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.269 1.269 12 H -0.288 1.288 13 N -0.670 5.670 14 C 0.108 3.892 15 C -0.160 4.160 16 C -0.110 4.110 17 C 0.038 3.962 18 N -0.664 5.664 19 C 0.043 3.957 20 H 0.054 0.946 21 H 0.073 0.927 22 H 0.050 0.950 23 H -0.013 1.013 24 H -0.012 1.012 25 H 0.257 0.743 26 H 0.338 0.662 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.029 0.971 34 H 0.339 0.661 35 H 0.036 0.964 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 4.925 13.878 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.008 4.008 3 H 0.074 0.926 4 C 0.001 3.999 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.193 1.193 12 H -0.214 1.214 13 N -0.301 5.301 14 C 0.017 3.983 15 C -0.219 4.219 16 C -0.149 4.149 17 C -0.092 4.092 18 N -0.292 5.292 19 C -0.087 4.087 20 H 0.073 0.927 21 H 0.092 0.908 22 H 0.069 0.931 23 H 0.005 0.995 24 H 0.006 0.994 25 H 0.066 0.934 26 H 0.157 0.843 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.154 0.846 35 H 0.054 0.946 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.275 5.112 13.942 15.023 hybrid contribution 0.684 -0.503 -1.131 1.414 sum -1.591 4.608 12.811 13.707 Atomic orbital electron populations 1.22582 0.96547 1.01896 1.02137 1.21393 0.92168 0.96512 0.90688 0.92565 1.19012 0.95125 0.94113 0.91699 1.21591 0.93404 1.31844 1.06325 0.91960 1.25855 1.02580 0.95955 0.95998 1.70103 1.36913 1.38292 1.13121 0.85639 0.81050 0.77359 0.78091 1.20186 1.19347 1.21366 1.60618 1.49307 1.15733 1.04486 1.21650 0.94409 0.91437 0.90842 1.22529 0.97282 1.00452 1.01648 1.22387 0.95855 0.99822 0.96797 1.22900 0.96673 0.89338 1.00247 1.63771 1.17655 1.25505 1.22305 1.23061 0.95336 0.98194 0.92085 0.92723 0.90839 0.93089 0.99504 0.99383 0.93442 0.84348 0.91823 0.91453 0.92956 0.89505 0.91063 0.88492 0.95266 0.84608 0.94588 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.59 8.85 71.98 0.64 -4.96 16 2 C 0.10 4.05 1.82 44.91 0.08 4.13 16 3 H 0.06 2.29 6.12 -2.38 -0.01 2.28 16 4 C 0.04 2.00 4.65 29.85 0.14 2.14 16 5 C -0.49 -28.00 8.84 25.60 0.23 -27.78 16 6 H 0.06 3.44 5.37 -2.91 -0.02 3.42 16 7 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 8 N -0.94 -58.68 13.29 21.45 0.28 -58.39 16 9 Si 0.95 45.85 29.54 68.60 2.03 47.88 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 N -0.67 -24.07 5.52 -443.92 -2.45 -26.52 16 14 C 0.11 3.24 0.89 4.42 0.00 3.25 16 15 C -0.16 -4.02 6.88 71.98 0.49 -3.52 16 16 C -0.11 -2.86 6.41 31.49 0.20 -2.66 16 17 C 0.04 0.97 7.47 86.45 0.65 1.62 16 18 N -0.66 -18.37 7.62 -500.44 -3.82 -22.18 16 19 C 0.04 1.42 5.32 86.42 0.46 1.88 16 20 H 0.05 1.71 8.01 -2.39 -0.02 1.69 16 21 H 0.07 1.97 5.52 -2.39 -0.01 1.95 16 22 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 23 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 24 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.34 11.04 8.26 -89.70 -0.74 10.30 16 27 H 0.06 1.42 7.97 -2.39 -0.02 1.40 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.38 6.05 -2.39 -0.01 1.36 16 30 H 0.09 1.87 7.71 -2.39 -0.02 1.85 16 31 H 0.07 1.93 7.95 -2.39 -0.02 1.91 16 32 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.03 0.82 8.14 -2.38 -0.02 0.81 16 34 H 0.34 8.67 8.92 -89.70 -0.80 7.87 16 35 H 0.04 1.47 5.67 -2.39 -0.01 1.45 16 36 H 0.07 2.29 7.59 -2.39 -0.02 2.27 16 Total: -1.00 -64.28 276.18 -1.08 -65.35 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.47 Total: 19.80 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 3.35 Total: -25.94 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -5.98 Total: -107.10 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -64.28 -1.08 -65.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695789621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.950 kcal (2) G-P(sol) polarization free energy of solvation -64.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds