Wall clock time and date at job start Mon Mar 30 2020 03:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50710 * 109.46737 * 174.99856 * 4 2 1 6 6 H 1.07992 * 119.99708 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99634 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00316 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47310 * 89.99684 * 9 7 5 11 11 H 1.48497 * 109.47277 * 210.00191 * 9 7 5 12 12 H 1.48504 * 109.47087 * 329.99845 * 9 7 5 13 13 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 14 14 C 1.46897 * 111.00133 * 275.00091 * 13 2 1 15 15 C 1.52997 * 109.47029 * 180.02562 * 14 13 2 16 16 C 1.53934 * 113.73640 * 273.76235 * 15 14 13 17 17 N 1.48194 * 86.10339 * 221.95915 * 16 15 14 18 18 C 1.46906 * 111.06757 * 137.51600 * 17 16 15 19 19 C 1.47960 * 90.79492 * 24.60048 * 17 16 15 20 20 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 24 24 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 25 25 H 0.97007 * 119.99795 * 179.97438 * 8 7 5 26 26 H 1.00900 * 111.00095 * 38.95609 * 13 2 1 27 27 H 1.09003 * 109.46826 * 299.99875 * 14 13 2 28 28 H 1.08993 * 109.47326 * 59.99934 * 14 13 2 29 29 H 1.09000 * 112.94196 * 45.33392 * 15 14 13 30 30 H 1.09002 * 113.75669 * 336.24162 * 16 15 14 31 31 H 1.08995 * 113.75874 * 107.60248 * 16 15 14 32 32 H 1.08996 * 109.47654 * 320.56952 * 18 17 16 33 33 H 1.09005 * 109.46471 * 80.56651 * 18 17 16 34 34 H 1.09000 * 109.46656 * 200.56076 * 18 17 16 35 35 H 1.09009 * 113.75667 * 221.08392 * 19 17 16 36 36 H 1.09001 * 113.86453 * 89.73741 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0862 -0.5393 7 6 4.2304 -1.1936 -2.3579 8 7 5.5410 -1.1003 -2.4136 9 14 3.3015 -2.1087 -3.6954 10 1 2.9407 -1.1639 -4.7827 11 1 4.1598 -3.1896 -4.2433 12 1 2.0653 -2.7004 -3.1233 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 6 2.5963 -0.5330 3.5741 16 6 1.4908 -1.2562 4.3642 17 7 2.1803 -0.7666 5.5811 18 6 1.2149 -0.2766 6.5740 19 6 2.7727 0.3549 4.8192 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7517 -1.7715 -1.2056 24 1 1.6053 -0.2617 -2.1370 25 1 6.0255 -1.5078 -3.1487 26 1 1.4497 -1.4979 1.4100 27 1 2.7589 1.0461 2.1182 28 1 1.0872 0.6162 2.5525 29 1 3.4612 -1.1595 3.3560 30 1 0.4978 -0.8301 4.2205 31 1 1.5096 -2.3404 4.2535 32 1 0.4148 0.2630 6.0675 33 1 0.7946 -1.1215 7.1197 34 1 1.7192 0.3920 7.2718 35 1 3.8140 0.5556 5.0715 36 1 2.1571 1.2543 4.8080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695791143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:41 Heat of formation + Delta-G solvation = 27.763496 kcal Electronic energy + Delta-G solvation = -14290.950990 eV Core-core repulsion = 12003.841980 eV Total energy + Delta-G solvation = -2287.109010 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.91621 -36.65953 -32.84466 -31.68882 -29.45420 -27.72384 -26.14746 -25.42427 -22.71925 -21.76741 -19.90949 -19.27001 -16.55021 -16.04218 -15.46868 -15.07309 -14.65474 -14.24331 -13.95679 -13.20417 -13.03046 -12.73822 -12.44080 -12.33945 -11.96779 -11.71723 -11.58676 -11.39258 -10.94154 -10.71916 -10.56109 -10.36066 -10.18858 -9.68063 -9.54581 -9.01305 -8.84671 -8.38229 -7.59877 -5.86651 -3.80226 3.38784 3.46572 3.49714 3.91569 4.42705 4.58535 4.67157 4.98754 5.07812 5.26750 5.37632 5.42481 5.48507 5.54806 5.59688 5.66208 5.68801 5.76195 5.79715 5.88392 5.94305 6.16299 6.24709 6.32494 6.48723 6.52676 6.83286 6.98237 7.18154 7.36322 7.83766 7.95646 8.12660 8.76921 9.24970 9.76584 11.27590 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045128 B = 0.006325 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.306133 B = 4426.009168 C = 4753.151927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.098 3.902 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.488 4.488 6 H 0.076 0.924 7 C 0.060 3.940 8 N -0.910 5.910 9 Si 0.875 3.125 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.660 5.660 14 C 0.070 3.930 15 C -0.108 4.108 16 C 0.001 3.999 17 N -0.486 5.486 18 C -0.010 4.010 19 C 0.004 3.996 20 H 0.039 0.961 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.016 0.984 24 H 0.011 0.989 25 H 0.259 0.741 26 H 0.330 0.670 27 H 0.073 0.927 28 H 0.016 0.984 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.031 0.969 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 2.266 12.922 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.012 4.012 3 H 0.087 0.913 4 C -0.042 4.042 5 C -0.526 4.526 6 H 0.094 0.906 7 C -0.140 4.140 8 N -0.550 5.550 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.290 5.290 14 C -0.060 4.060 15 C -0.127 4.127 16 C -0.127 4.127 17 N -0.208 5.208 18 C -0.159 4.159 19 C -0.125 4.125 20 H 0.058 0.942 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.091 0.909 28 H 0.034 0.966 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.320 1.861 13.054 16.147 hybrid contribution -2.015 0.164 -0.868 2.200 sum -11.335 2.025 12.186 16.765 Atomic orbital electron populations 1.22595 0.99575 1.01182 1.00804 1.21560 0.89609 0.98292 0.91740 0.91265 1.19608 0.97836 0.95395 0.91367 1.21041 0.89519 1.33636 1.08410 0.90564 1.25018 0.94686 0.96338 0.97913 1.69919 1.06442 1.46330 1.32348 0.86865 0.80201 0.80004 0.82609 1.20700 1.21663 1.19319 1.60447 1.57531 1.08559 1.02422 1.21943 0.97920 0.95861 0.90282 1.23034 0.99490 0.97426 0.92757 1.24145 0.96477 1.01785 0.90336 1.68500 1.23233 1.21786 1.07274 1.22846 0.95513 1.00298 0.97280 1.23976 1.01412 0.93739 0.93364 0.94165 0.92492 0.93056 0.96605 0.97065 0.93126 0.85285 0.90863 0.96593 0.87024 0.91676 0.89327 0.94991 0.91408 0.91561 0.89249 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.16 37.16 0.34 -2.51 16 2 C 0.10 1.89 2.53 -67.71 -0.17 1.72 16 3 H 0.07 1.39 7.80 -51.93 -0.40 0.99 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -14.00 9.39 -34.44 -0.32 -14.32 16 6 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.72 13.96 55.43 0.77 -27.95 16 9 Si 0.87 22.17 27.47 -169.99 -4.67 17.50 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 13 N -0.66 -11.97 5.96 -106.73 -0.64 -12.61 16 14 C 0.07 1.05 5.32 -3.83 -0.02 1.03 16 15 C -0.11 -1.46 4.07 -89.69 -0.37 -1.83 16 16 C 0.00 0.01 7.54 -2.63 -0.02 -0.01 16 17 N -0.49 -5.96 6.56 -246.35 -1.61 -7.57 16 18 C -0.01 -0.10 9.65 60.07 0.58 0.48 16 19 C 0.00 0.05 7.55 -2.76 -0.02 0.03 16 20 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 23 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 24 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.33 5.49 8.47 -39.29 -0.33 5.16 16 27 H 0.07 1.18 8.06 -51.93 -0.42 0.77 16 28 H 0.02 0.22 7.17 -51.93 -0.37 -0.15 16 29 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.07 0.73 7.40 -51.93 -0.38 0.34 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.03 0.30 7.63 -51.93 -0.40 -0.10 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 LS Contribution 289.03 15.07 4.36 4.36 Total: -1.00 -31.07 289.03 -8.41 -39.48 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.42 Total: 0.73 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -0.20 Total: -13.94 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -1.48 Total: -48.13 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.07 -8.41 -39.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.245 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds