Wall clock time and date at job start Mon Mar 30 2020 03:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50710 * 109.46737 * 174.99856 * 4 2 1 6 6 H 1.07992 * 119.99708 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99634 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00316 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47310 * 89.99684 * 9 7 5 11 11 H 1.48497 * 109.47277 * 210.00191 * 9 7 5 12 12 H 1.48504 * 109.47087 * 329.99845 * 9 7 5 13 13 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 14 14 C 1.46897 * 111.00133 * 275.00091 * 13 2 1 15 15 C 1.52997 * 109.47029 * 180.02562 * 14 13 2 16 16 C 1.53934 * 113.73640 * 273.76235 * 15 14 13 17 17 N 1.48194 * 86.10339 * 221.95915 * 16 15 14 18 18 C 1.46906 * 111.06757 * 137.51600 * 17 16 15 19 19 C 1.47960 * 90.79492 * 24.60048 * 17 16 15 20 20 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 24 24 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 25 25 H 0.97007 * 119.99795 * 179.97438 * 8 7 5 26 26 H 1.00900 * 111.00095 * 38.95609 * 13 2 1 27 27 H 1.09003 * 109.46826 * 299.99875 * 14 13 2 28 28 H 1.08993 * 109.47326 * 59.99934 * 14 13 2 29 29 H 1.09000 * 112.94196 * 45.33392 * 15 14 13 30 30 H 1.09002 * 113.75669 * 336.24162 * 16 15 14 31 31 H 1.08995 * 113.75874 * 107.60248 * 16 15 14 32 32 H 1.08996 * 109.47654 * 320.56952 * 18 17 16 33 33 H 1.09005 * 109.46471 * 80.56651 * 18 17 16 34 34 H 1.09000 * 109.46656 * 200.56076 * 18 17 16 35 35 H 1.09009 * 113.75667 * 221.08392 * 19 17 16 36 36 H 1.09001 * 113.86453 * 89.73741 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0862 -0.5393 7 6 4.2304 -1.1936 -2.3579 8 7 5.5410 -1.1003 -2.4136 9 14 3.3015 -2.1087 -3.6954 10 1 2.9407 -1.1639 -4.7827 11 1 4.1598 -3.1896 -4.2433 12 1 2.0653 -2.7004 -3.1233 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 6 2.5963 -0.5330 3.5741 16 6 1.4908 -1.2562 4.3642 17 7 2.1803 -0.7666 5.5811 18 6 1.2149 -0.2766 6.5740 19 6 2.7727 0.3549 4.8192 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7517 -1.7715 -1.2056 24 1 1.6053 -0.2617 -2.1370 25 1 6.0255 -1.5078 -3.1487 26 1 1.4497 -1.4979 1.4100 27 1 2.7589 1.0461 2.1182 28 1 1.0872 0.6162 2.5525 29 1 3.4612 -1.1595 3.3560 30 1 0.4978 -0.8301 4.2205 31 1 1.5096 -2.3404 4.2535 32 1 0.4148 0.2630 6.0675 33 1 0.7946 -1.1215 7.1197 34 1 1.7192 0.3920 7.2718 35 1 3.8140 0.5556 5.0715 36 1 2.1571 1.2543 4.8080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695791143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:41 Heat of formation + Delta-G solvation = 3.776877 kcal Electronic energy + Delta-G solvation = -14291.991128 eV Core-core repulsion = 12003.841980 eV Total energy + Delta-G solvation = -2288.149148 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.90728 -38.12411 -34.80637 -33.20124 -30.77121 -29.39114 -27.09855 -26.54392 -24.56279 -22.90206 -21.43989 -20.42069 -18.75242 -17.17947 -16.64244 -16.22541 -16.09483 -15.74867 -15.24923 -14.88877 -14.19707 -14.10097 -13.72869 -13.61118 -13.48053 -13.39030 -12.86533 -12.48845 -12.34859 -12.25384 -11.96410 -11.63015 -11.58403 -11.40935 -11.33334 -11.07379 -10.65431 -9.77025 -8.97347 -8.15199 -6.13995 1.38934 1.41577 1.52706 2.44829 2.99244 3.16453 3.30371 3.62947 3.98097 4.15460 4.21099 4.36812 4.37250 4.42213 4.49714 4.56712 4.61127 4.66276 4.79983 4.83561 4.95213 4.97868 5.00746 5.16350 5.21162 5.30164 5.36332 5.38019 5.56827 5.78943 6.10211 6.37347 6.53832 6.78760 6.94515 7.46640 9.02573 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045128 B = 0.006325 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.306133 B = 4426.009168 C = 4753.151927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 H 0.053 0.947 4 C -0.004 4.004 5 C -0.489 4.489 6 H 0.031 0.969 7 C -0.007 4.007 8 N -0.961 5.961 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.248 1.248 13 N -0.686 5.686 14 C 0.079 3.921 15 C -0.112 4.112 16 C 0.011 3.989 17 N -0.504 5.504 18 C -0.011 4.011 19 C 0.011 3.989 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.017 0.983 24 H 0.019 0.981 25 H 0.260 0.740 26 H 0.339 0.661 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 2.023 13.283 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 H 0.071 0.929 4 C -0.041 4.041 5 C -0.528 4.528 6 H 0.049 0.951 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.773 3.227 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.172 1.172 13 N -0.317 5.317 14 C -0.051 4.051 15 C -0.132 4.132 16 C -0.117 4.117 17 N -0.227 5.227 18 C -0.159 4.159 19 C -0.118 4.118 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.035 0.965 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.157 0.843 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.121 1.626 13.437 18.169 hybrid contribution -1.073 0.289 -0.893 1.426 sum -13.194 1.914 12.544 18.306 Atomic orbital electron populations 1.22425 0.95888 1.02278 1.02283 1.21347 0.92443 0.96667 0.90466 0.92867 1.19587 0.94342 0.96076 0.94129 1.21326 0.92267 1.32322 1.06881 0.95055 1.26000 0.95545 0.97669 1.00945 1.70099 1.08567 1.48125 1.33636 0.85685 0.79225 0.78572 0.79205 1.19475 1.21702 1.17154 1.60295 1.58421 1.09710 1.03228 1.21866 0.98653 0.94907 0.89633 1.22913 0.99338 0.97952 0.92953 1.24105 0.96436 1.01596 0.89603 1.68480 1.24274 1.22115 1.07789 1.22894 0.95318 1.00830 0.96899 1.23960 1.01751 0.94068 0.92005 0.91891 0.91853 0.92110 0.96491 0.96326 0.93118 0.84271 0.92893 0.94234 0.89935 0.90077 0.89530 0.94027 0.90752 0.90790 0.89541 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 9.16 71.98 0.66 -4.08 16 2 C 0.10 3.78 2.53 44.92 0.11 3.90 16 3 H 0.05 2.14 7.80 -2.39 -0.02 2.12 16 4 C 0.00 -0.17 3.72 29.85 0.11 -0.05 16 5 C -0.49 -28.74 9.39 25.60 0.24 -28.50 16 6 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 7 C -0.01 -0.44 5.47 84.65 0.46 0.03 16 8 N -0.96 -62.54 13.96 21.45 0.30 -62.24 16 9 Si 0.95 45.60 27.47 68.60 1.88 47.48 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 12 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 13 N -0.69 -24.54 5.96 -491.58 -2.93 -27.47 16 14 C 0.08 2.32 5.32 86.30 0.46 2.78 16 15 C -0.11 -3.00 4.07 -10.15 -0.04 -3.04 16 16 C 0.01 0.25 7.54 86.36 0.65 0.90 16 17 N -0.50 -11.50 6.56 -933.31 -6.12 -17.61 16 18 C -0.01 -0.18 9.65 127.69 1.23 1.05 16 19 C 0.01 0.26 7.55 86.41 0.65 0.91 16 20 H 0.06 1.48 7.45 -2.39 -0.02 1.47 16 21 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.06 1.59 8.13 -2.39 -0.02 1.58 16 23 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 24 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 25 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 26 H 0.34 10.83 8.47 -89.69 -0.76 10.07 16 27 H 0.05 1.74 8.06 -2.39 -0.02 1.72 16 28 H 0.04 0.98 7.17 -2.39 -0.02 0.97 16 29 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.08 1.55 7.40 -2.39 -0.02 1.53 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 0.64 7.63 -2.39 -0.02 0.62 16 33 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.08 1.60 7.88 -2.39 -0.02 1.58 16 Total: -1.00 -68.17 289.03 -2.11 -70.28 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.21 Total: 15.67 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 4.54 Total: -26.11 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -8.75 Total: -107.33 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -68.17 -2.11 -70.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.060 kcal (2) G-P(sol) polarization free energy of solvation -68.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds