Wall clock time and date at job start Mon Mar 30 2020 03:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.50698 * 109.47265 * 185.00055 * 4 2 1 6 6 H 1.08004 * 119.99892 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99977 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99769 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47225 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47134 * 119.99870 * 9 7 5 12 12 H 1.48501 * 109.46973 * 239.99939 * 9 7 5 13 13 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 14 14 C 1.46899 * 111.00029 * 85.00270 * 13 2 1 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 2 16 16 C 1.53935 * 113.73611 * 273.76586 * 15 14 13 17 17 N 1.48181 * 86.10469 * 221.95628 * 16 15 14 18 18 C 1.46898 * 111.07347 * 137.51624 * 17 16 15 19 19 C 1.47961 * 90.79696 * 24.59739 * 17 16 15 20 20 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 21 21 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 23 23 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 24 24 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 25 25 H 0.97008 * 119.99699 * 180.02562 * 8 7 5 26 26 H 1.00902 * 111.00190 * 321.03970 * 13 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 14 13 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 14 13 2 29 29 H 1.09006 * 112.93811 * 45.32820 * 15 14 13 30 30 H 1.08998 * 113.75751 * 336.23999 * 16 15 14 31 31 H 1.09005 * 113.76340 * 107.59763 * 16 15 14 32 32 H 1.08994 * 109.47437 * 320.57363 * 18 17 16 33 33 H 1.09010 * 109.46603 * 80.57024 * 18 17 16 34 34 H 1.08994 * 109.47553 * 200.56435 * 18 17 16 35 35 H 1.09007 * 113.75937 * 221.08136 * 19 17 16 36 36 H 1.08996 * 113.85796 * 89.73718 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6151 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1929 2.3582 8 7 3.5762 -1.8364 3.3003 9 14 6.0919 -1.0604 2.4373 10 1 6.5836 -0.2910 1.2662 11 1 6.4859 -0.3642 3.6884 12 1 6.6861 -2.4213 2.4198 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5961 -0.5327 -3.5742 16 6 4.1314 -0.5759 -3.6774 17 7 3.9407 -0.3129 -5.1232 18 6 4.9109 0.6755 -5.6127 19 6 2.6294 0.3183 -4.8565 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.6054 -0.2619 2.1369 24 1 1.7516 -1.7717 1.2054 25 1 4.0605 -2.2426 4.0362 26 1 1.4495 -1.4979 -1.4101 27 1 1.0870 0.6165 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 2.1201 -1.5046 -3.7049 30 1 4.6303 0.2343 -3.1457 31 1 4.5588 -1.5550 -3.4606 32 1 5.0446 1.4555 -4.8632 33 1 5.8660 0.1848 -5.8008 34 1 4.5423 1.1195 -6.5374 35 1 1.8587 0.0526 -5.5801 36 1 2.6860 1.3908 -4.6704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695791145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:44 Heat of formation + Delta-G solvation = 23.491742 kcal Electronic energy + Delta-G solvation = -14349.522100 eV Core-core repulsion = 12062.227853 eV Total energy + Delta-G solvation = -2287.294247 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.81348 -36.54653 -32.88061 -31.58915 -29.23898 -27.22171 -26.00173 -25.32955 -22.98378 -21.72352 -20.05942 -19.09013 -16.20901 -15.82268 -15.38381 -15.14291 -14.38456 -14.30301 -13.96002 -13.38979 -12.88397 -12.60836 -12.34055 -11.89109 -11.77111 -11.55941 -11.36563 -11.25008 -10.84086 -10.68225 -10.50930 -10.38176 -10.25407 -10.01159 -9.25968 -8.93505 -8.75767 -8.22852 -7.51153 -5.84958 -3.82157 3.39745 3.47063 3.51767 4.02243 4.44843 4.59124 4.78006 5.08878 5.20765 5.34983 5.46691 5.53004 5.54602 5.64172 5.68026 5.74890 5.79830 5.82984 5.94073 6.02882 6.06535 6.10183 6.32618 6.47696 6.49999 6.65430 7.05648 7.08001 7.59982 7.72979 8.06120 8.10362 8.21646 8.63950 9.23290 9.78926 11.27333 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025648 B = 0.008148 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.452638 B = 3435.665888 C = 4362.577099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.032 3.968 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.662 5.662 14 C 0.068 3.932 15 C -0.107 4.107 16 C 0.018 3.982 17 N -0.492 5.492 18 C -0.010 4.010 19 C 0.003 3.997 20 H 0.036 0.964 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.256 0.744 26 H 0.331 0.669 27 H 0.020 0.980 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 4.751 -14.062 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.292 5.292 14 C -0.062 4.062 15 C -0.126 4.126 16 C -0.111 4.111 17 N -0.214 5.214 18 C -0.159 4.159 19 C -0.127 4.127 20 H 0.055 0.945 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.148 0.852 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.901 4.225 -14.230 14.965 hybrid contribution 0.157 0.865 0.431 0.979 sum -1.743 5.090 -13.799 14.811 Atomic orbital electron populations 1.22555 0.99599 1.01183 1.00529 1.21790 0.89826 0.98072 0.92380 0.91968 1.19120 0.96237 0.95414 0.89737 1.21177 0.91917 1.32628 1.06636 0.92392 1.25007 0.97932 0.95998 0.96095 1.69976 1.35030 1.37203 1.12375 0.86592 0.86590 0.77559 0.77542 1.19907 1.21462 1.21300 1.60520 1.57730 1.08495 1.02428 1.21966 0.98243 0.95676 0.90300 1.22936 0.96564 0.99722 0.93415 1.24002 0.96671 1.02908 0.87479 1.68501 1.02468 1.32999 1.17419 1.22835 0.97712 0.95191 1.00207 1.23971 0.93614 0.97721 0.97356 0.94480 0.93021 0.92542 0.96546 0.96487 0.93433 0.85169 0.96168 0.91549 0.88548 0.90939 0.89141 0.94755 0.91348 0.91814 0.89807 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 9.16 37.16 0.34 -2.67 16 2 C 0.09 1.78 2.53 -67.71 -0.17 1.61 16 3 H 0.06 1.29 7.80 -51.93 -0.40 0.88 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.48 -13.75 8.84 -34.44 -0.30 -14.05 16 6 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 9 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 N -0.66 -12.14 5.96 -106.72 -0.64 -12.78 16 14 C 0.07 1.03 5.32 -3.83 -0.02 1.01 16 15 C -0.11 -1.44 4.07 -89.69 -0.37 -1.81 16 16 C 0.02 0.25 7.54 -2.64 -0.02 0.23 16 17 N -0.49 -6.42 6.55 -246.39 -1.61 -8.03 16 18 C -0.01 -0.11 9.65 60.06 0.58 0.47 16 19 C 0.00 0.03 7.55 -2.76 -0.02 0.01 16 20 H 0.04 0.54 7.45 -51.92 -0.39 0.16 16 21 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.33 5.69 8.47 -39.29 -0.33 5.36 16 27 H 0.02 0.28 7.44 -51.93 -0.39 -0.10 16 28 H 0.07 1.06 7.79 -51.93 -0.40 0.66 16 29 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.08 7.40 -51.93 -0.38 0.69 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.03 0.37 7.63 -51.93 -0.40 -0.02 16 33 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 LS Contribution 292.63 15.07 4.41 4.41 Total: -1.00 -30.27 292.63 -8.79 -39.06 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.45 Total: 0.18 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.21 Total: -13.18 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -1.52 Total: -47.73 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.27 -8.79 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.547 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds