Wall clock time and date at job start Mon Mar 30 2020 03:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.50698 * 109.47265 * 185.00055 * 4 2 1 6 6 H 1.08004 * 119.99892 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99977 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99769 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47225 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47134 * 119.99870 * 9 7 5 12 12 H 1.48501 * 109.46973 * 239.99939 * 9 7 5 13 13 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 14 14 C 1.46899 * 111.00029 * 85.00270 * 13 2 1 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 2 16 16 C 1.53935 * 113.73611 * 273.76586 * 15 14 13 17 17 N 1.48181 * 86.10469 * 221.95628 * 16 15 14 18 18 C 1.46898 * 111.07347 * 137.51624 * 17 16 15 19 19 C 1.47961 * 90.79696 * 24.59739 * 17 16 15 20 20 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 21 21 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 23 23 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 24 24 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 25 25 H 0.97008 * 119.99699 * 180.02562 * 8 7 5 26 26 H 1.00902 * 111.00190 * 321.03970 * 13 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 14 13 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 14 13 2 29 29 H 1.09006 * 112.93811 * 45.32820 * 15 14 13 30 30 H 1.08998 * 113.75751 * 336.23999 * 16 15 14 31 31 H 1.09005 * 113.76340 * 107.59763 * 16 15 14 32 32 H 1.08994 * 109.47437 * 320.57363 * 18 17 16 33 33 H 1.09010 * 109.46603 * 80.57024 * 18 17 16 34 34 H 1.08994 * 109.47553 * 200.56435 * 18 17 16 35 35 H 1.09007 * 113.75937 * 221.08136 * 19 17 16 36 36 H 1.08996 * 113.85796 * 89.73718 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6151 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1929 2.3582 8 7 3.5762 -1.8364 3.3003 9 14 6.0919 -1.0604 2.4373 10 1 6.5836 -0.2910 1.2662 11 1 6.4859 -0.3642 3.6884 12 1 6.6861 -2.4213 2.4198 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5961 -0.5327 -3.5742 16 6 4.1314 -0.5759 -3.6774 17 7 3.9407 -0.3129 -5.1232 18 6 4.9109 0.6755 -5.6127 19 6 2.6294 0.3183 -4.8565 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.6054 -0.2619 2.1369 24 1 1.7516 -1.7717 1.2054 25 1 4.0605 -2.2426 4.0362 26 1 1.4495 -1.4979 -1.4101 27 1 1.0870 0.6165 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 2.1201 -1.5046 -3.7049 30 1 4.6303 0.2343 -3.1457 31 1 4.5588 -1.5550 -3.4606 32 1 5.0446 1.4555 -4.8632 33 1 5.8660 0.1848 -5.8008 34 1 4.5423 1.1195 -6.5374 35 1 1.8587 0.0526 -5.5801 36 1 2.6860 1.3908 -4.6704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695791145.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:44 Heat of formation + Delta-G solvation = 1.149830 kcal Electronic energy + Delta-G solvation = -14350.490918 eV Core-core repulsion = 12062.227853 eV Total energy + Delta-G solvation = -2288.263065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85099 -38.07877 -34.87311 -33.05631 -30.55209 -29.07123 -27.03161 -26.51067 -24.95106 -22.86314 -21.57249 -20.32734 -18.37026 -16.93069 -16.70000 -16.43407 -16.18953 -15.60735 -15.19649 -14.74211 -14.30496 -13.98365 -13.61190 -13.57853 -13.21769 -13.05185 -12.98708 -12.61034 -12.36389 -12.30019 -12.06583 -11.86524 -11.54850 -11.46380 -11.07803 -11.04032 -10.48236 -9.77276 -8.93695 -8.08739 -6.13113 1.40566 1.41853 1.54257 2.47790 3.03389 3.20616 3.30683 3.71391 3.98166 4.19808 4.26220 4.37990 4.42867 4.51288 4.57539 4.58060 4.63683 4.69877 4.73968 4.86995 4.94161 4.96949 5.03425 5.25219 5.30576 5.36435 5.39357 5.53422 5.70910 5.91962 6.10633 6.36034 6.52804 6.78089 7.01448 7.52386 9.03739 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025648 B = 0.008148 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.452638 B = 3435.665888 C = 4362.577099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.056 0.944 4 C 0.036 3.964 5 C -0.495 4.495 6 H 0.056 0.944 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.681 5.681 14 C 0.076 3.924 15 C -0.104 4.104 16 C 0.011 3.989 17 N -0.502 5.502 18 C -0.011 4.011 19 C 0.014 3.986 20 H 0.065 0.935 21 H 0.052 0.948 22 H 0.054 0.946 23 H -0.009 1.009 24 H -0.010 1.010 25 H 0.258 0.742 26 H 0.337 0.663 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 5.619 -15.796 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 H 0.075 0.925 4 C -0.001 4.001 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.312 5.312 14 C -0.054 4.054 15 C -0.123 4.123 16 C -0.117 4.117 17 N -0.225 5.225 18 C -0.160 4.160 19 C -0.115 4.115 20 H 0.084 0.916 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.067 0.933 26 H 0.155 0.845 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.855 5.104 -15.986 16.884 hybrid contribution 0.135 0.590 0.950 1.127 sum -1.720 5.693 -15.036 16.170 Atomic orbital electron populations 1.22406 0.96731 1.01767 1.01887 1.21441 0.92062 0.96726 0.90851 0.92533 1.19017 0.95111 0.94230 0.91792 1.21510 0.93422 1.32046 1.06331 0.92614 1.25865 1.02847 0.95793 0.95859 1.70103 1.36962 1.38271 1.13097 0.85535 0.80761 0.77649 0.77882 1.18970 1.20789 1.20970 1.60345 1.58264 1.09484 1.03090 1.21927 0.99101 0.94861 0.89475 1.22896 0.95675 1.00083 0.93658 1.23949 0.97282 1.01814 0.88688 1.68481 1.03553 1.34215 1.16206 1.22879 0.97485 0.94812 1.00848 1.23984 0.93257 0.97897 0.96383 0.91566 0.92852 0.92682 0.99107 0.99114 0.93325 0.84490 0.94169 0.92618 0.88471 0.91863 0.90617 0.94742 0.91260 0.90118 0.88140 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.39 9.16 71.98 0.66 -4.73 16 2 C 0.10 3.94 2.53 44.91 0.11 4.05 16 3 H 0.06 2.30 7.80 -2.39 -0.02 2.28 16 4 C 0.04 1.89 4.65 29.85 0.14 2.03 16 5 C -0.49 -28.40 8.84 25.60 0.23 -28.17 16 6 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 7 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 8 N -0.94 -58.63 13.29 21.45 0.28 -58.34 16 9 Si 0.96 46.03 29.54 68.60 2.03 48.05 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 13 N -0.68 -24.39 5.96 -491.57 -2.93 -27.32 16 14 C 0.08 2.14 5.32 86.30 0.46 2.60 16 15 C -0.10 -2.60 4.07 -10.15 -0.04 -2.64 16 16 C 0.01 0.31 7.54 86.37 0.65 0.97 16 17 N -0.50 -12.13 6.55 -933.45 -6.12 -18.25 16 18 C -0.01 -0.23 9.65 127.69 1.23 1.01 16 19 C 0.01 0.28 7.55 86.41 0.65 0.94 16 20 H 0.07 1.74 7.45 -2.38 -0.02 1.72 16 21 H 0.05 1.68 8.13 -2.38 -0.02 1.66 16 22 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H 0.26 15.18 8.31 -92.70 -0.77 14.40 16 26 H 0.34 11.26 8.47 -89.69 -0.76 10.50 16 27 H 0.04 0.99 7.44 -2.39 -0.02 0.97 16 28 H 0.06 1.69 7.79 -2.39 -0.02 1.68 16 29 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.06 1.85 7.40 -2.39 -0.02 1.83 16 31 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.03 0.69 7.63 -2.39 -0.02 0.67 16 33 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.08 1.45 7.88 -2.39 -0.02 1.43 16 Total: -1.00 -64.75 292.63 -1.92 -66.67 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.27 Total: 13.17 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.55 Total: -23.98 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -8.76 Total: -103.91 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -64.75 -1.92 -66.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695791145.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.821 kcal (2) G-P(sol) polarization free energy of solvation -64.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds