Wall clock time and date at job start Mon Mar 30 2020 03:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47308 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99966 * 2 1 3 5 5 C 1.50702 * 109.47525 * 184.99782 * 4 2 1 6 6 H 1.08002 * 119.99441 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00075 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00481 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 179.73007 * 7 5 4 10 10 H 1.48502 * 109.46964 * 270.27509 * 9 7 5 11 11 H 1.48505 * 109.47036 * 30.26897 * 9 7 5 12 12 H 1.48490 * 109.47395 * 150.27411 * 9 7 5 13 13 N 1.46904 * 109.47123 * 239.99620 * 2 1 3 14 14 C 1.46901 * 110.99458 * 85.00133 * 13 2 1 15 15 H 1.08995 * 110.63040 * 34.30307 * 14 13 2 16 16 C 1.55142 * 110.70337 * 157.40268 * 14 13 2 17 17 C 1.55121 * 101.55900 * 153.90391 * 16 14 13 18 18 N 1.47847 * 104.90465 * 323.16334 * 17 16 14 19 19 C 1.46898 * 110.99991 * 146.23995 * 18 17 16 20 20 C 1.47437 * 108.56801 * 23.96628 * 18 17 16 21 21 H 1.08994 * 109.46887 * 299.99714 * 1 2 3 22 22 H 1.09001 * 109.46945 * 60.00377 * 1 2 3 23 23 H 1.09002 * 109.47118 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.47378 * 65.00062 * 4 2 1 25 25 H 1.08998 * 109.47458 * 305.00523 * 4 2 1 26 26 H 0.97005 * 119.99656 * 359.72741 * 8 7 5 27 27 H 1.00903 * 111.00085 * 321.04984 * 13 2 1 28 28 H 1.08997 * 110.99206 * 272.12502 * 16 14 13 29 29 H 1.09005 * 110.99169 * 35.94602 * 16 14 13 30 30 H 1.08999 * 110.42587 * 204.24064 * 17 16 14 31 31 H 1.09006 * 110.30758 * 82.01754 * 17 16 14 32 32 H 1.09003 * 109.46895 * 299.15608 * 19 18 17 33 33 H 1.09000 * 109.47060 * 59.15729 * 19 18 17 34 34 H 1.08997 * 109.47150 * 179.15211 * 19 18 17 35 35 H 1.08994 * 109.89118 * 239.60288 * 20 18 17 36 36 H 1.09004 * 110.02038 * 118.49328 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3128 6 1 4.0789 -0.0855 0.5396 7 6 4.2304 -1.1936 2.3578 8 7 3.5765 -1.8379 3.2995 9 14 6.0927 -1.0683 2.4325 10 1 6.6955 -2.2210 1.7160 11 1 6.5299 0.1972 1.7901 12 1 6.5333 -1.0817 3.8505 13 7 2.0197 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3468 15 1 2.3518 1.2276 -2.0222 16 6 3.0860 -0.2980 -3.4093 17 6 2.5236 0.3395 -4.7068 18 7 1.0545 0.2934 -4.5473 19 6 0.4195 1.4576 -5.1791 20 6 0.7401 0.2362 -3.1080 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7517 -1.7716 1.2056 25 1 1.6054 -0.2618 2.1370 26 1 2.6093 -1.9026 3.2610 27 1 1.4495 -1.4980 -1.4100 28 1 4.0948 0.0586 -3.2013 29 1 3.0626 -1.3862 -3.4685 30 1 2.8291 -0.2393 -5.5784 31 1 2.8630 1.3713 -4.7993 32 1 0.7816 2.3704 -4.7058 33 1 0.6677 1.4755 -6.2403 34 1 -0.6618 1.3909 -5.0600 35 1 0.1791 -0.6717 -2.8867 36 1 0.1584 1.1113 -2.8180 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695817535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:16 Heat of formation + Delta-G solvation = -6.168306 kcal Electronic energy + Delta-G solvation = -14626.270128 eV Core-core repulsion = 12337.689725 eV Total energy + Delta-G solvation = -2288.580403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.17850 -36.21558 -33.07739 -31.64104 -29.43394 -27.45670 -26.78557 -24.97755 -22.80513 -20.94599 -20.57658 -19.94629 -16.74645 -15.97799 -15.74554 -14.40333 -14.31349 -13.82171 -13.65293 -13.34639 -13.09408 -12.82801 -12.47313 -12.01524 -11.73789 -11.59695 -11.39174 -11.28149 -11.01015 -10.91155 -10.67490 -10.54716 -10.22475 -10.02164 -9.49593 -8.48186 -8.37378 -8.18028 -7.60149 -6.18493 -3.83259 3.52615 3.56351 3.71877 3.98484 4.58857 4.67723 4.84016 4.97757 5.14786 5.30950 5.33128 5.39778 5.57282 5.60051 5.63677 5.70347 5.71191 5.80691 5.91220 5.98216 6.04255 6.27649 6.34066 6.40663 6.52855 6.86928 6.92142 7.00533 7.34459 7.45970 7.88460 8.05247 8.43888 8.69106 9.07566 9.85393 11.22093 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040449 B = 0.007381 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.058226 B = 3792.504377 C = 4339.692477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.096 3.904 3 H 0.063 0.937 4 C 0.019 3.981 5 C -0.569 4.569 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.924 5.924 9 Si 1.071 2.929 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.288 1.288 13 N -0.650 5.650 14 C 0.071 3.929 15 H 0.078 0.922 16 C -0.117 4.117 17 C 0.039 3.961 18 N -0.535 5.535 19 C 0.021 3.979 20 C 0.014 3.986 21 H 0.054 0.946 22 H 0.041 0.959 23 H 0.051 0.949 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.266 0.734 27 H 0.334 0.666 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.025 0.975 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.093 5.588 -14.378 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.013 4.013 3 H 0.082 0.918 4 C -0.018 4.018 5 C -0.607 4.607 6 H 0.070 0.930 7 C -0.195 4.195 8 N -0.562 5.562 9 Si 0.901 3.099 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.279 5.279 14 C -0.041 4.041 15 H 0.096 0.904 16 C -0.155 4.155 17 C -0.089 4.089 18 N -0.259 5.259 19 C -0.128 4.128 20 C -0.116 4.116 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.026 0.974 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.153 0.847 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.289 4.804 -13.552 14.750 hybrid contribution -2.138 1.313 -0.793 2.632 sum -5.427 6.117 -14.345 16.513 Atomic orbital electron populations 1.22686 0.99472 1.01274 1.00838 1.21688 0.89792 0.97892 0.91956 0.91832 1.19241 0.97375 0.94768 0.90436 1.21950 0.91573 1.37189 1.10035 0.93042 1.25768 1.06622 0.94086 0.93037 1.70758 1.10024 1.40942 1.34515 0.83513 0.74848 0.75878 0.75706 1.21678 1.21765 1.21397 1.60510 1.57472 1.07945 1.01948 1.22865 0.92884 0.97039 0.91297 0.90410 1.22726 0.98908 1.01583 0.92312 1.23126 0.87093 0.99473 0.99185 1.63527 1.09229 1.40089 1.13089 1.22520 0.99657 0.91123 0.99503 1.23810 0.99015 1.01362 0.87435 0.92641 0.93950 0.93018 0.97433 0.97502 0.92419 0.84658 0.90471 0.90238 0.90394 0.93852 0.95658 0.91594 0.91690 0.90635 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.98 37.16 0.33 -2.74 16 2 C 0.10 1.95 2.53 -67.71 -0.17 1.78 16 3 H 0.06 1.34 7.46 -51.93 -0.39 0.95 16 4 C 0.02 0.49 3.97 -27.88 -0.11 0.38 16 5 C -0.57 -16.39 8.84 -34.44 -0.30 -16.69 16 6 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.01 0.20 5.46 -17.82 -0.10 0.10 16 8 N -0.92 -29.03 13.65 55.43 0.76 -28.27 16 9 Si 1.07 26.32 29.90 -169.99 -5.08 21.24 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 N -0.65 -12.20 5.86 -97.84 -0.57 -12.77 16 14 C 0.07 1.12 3.23 -65.89 -0.21 0.91 16 15 H 0.08 1.29 7.48 -51.93 -0.39 0.90 16 16 C -0.12 -1.67 6.78 -24.48 -0.17 -1.83 16 17 C 0.04 0.48 6.73 -2.18 -0.01 0.46 16 18 N -0.53 -6.90 5.45 -239.38 -1.30 -8.20 16 19 C 0.02 0.22 9.12 60.06 0.55 0.77 16 20 C 0.01 0.19 5.11 -2.84 -0.01 0.17 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 22 H 0.04 0.62 6.09 -51.93 -0.32 0.30 16 23 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 24 H 0.01 0.20 8.01 -51.92 -0.42 -0.21 16 25 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 26 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 27 H 0.33 5.96 7.84 -39.29 -0.31 5.65 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.50 7.78 -51.93 -0.40 0.09 16 32 H 0.02 0.26 8.10 -51.93 -0.42 -0.16 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.07 7.53 -51.93 -0.39 0.68 16 36 H 0.05 0.67 6.93 -51.93 -0.36 0.31 16 LS Contribution 284.11 15.07 4.28 4.28 Total: -1.00 -30.99 284.11 -8.40 -39.38 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.26 Total: 1.04 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -0.21 Total: -16.70 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -1.12 Total: -49.25 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -5.08 Total: 21.24 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.99 -8.40 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.213 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds