Wall clock time and date at job start Mon Mar 30 2020 03:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47308 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99966 * 2 1 3 5 5 C 1.50702 * 109.47525 * 184.99782 * 4 2 1 6 6 H 1.08002 * 119.99441 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00075 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00481 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99886 * 179.73007 * 7 5 4 10 10 H 1.48502 * 109.46964 * 270.27509 * 9 7 5 11 11 H 1.48505 * 109.47036 * 30.26897 * 9 7 5 12 12 H 1.48490 * 109.47395 * 150.27411 * 9 7 5 13 13 N 1.46904 * 109.47123 * 239.99620 * 2 1 3 14 14 C 1.46901 * 110.99458 * 85.00133 * 13 2 1 15 15 H 1.08995 * 110.63040 * 34.30307 * 14 13 2 16 16 C 1.55142 * 110.70337 * 157.40268 * 14 13 2 17 17 C 1.55121 * 101.55900 * 153.90391 * 16 14 13 18 18 N 1.47847 * 104.90465 * 323.16334 * 17 16 14 19 19 C 1.46898 * 110.99991 * 146.23995 * 18 17 16 20 20 C 1.47437 * 108.56801 * 23.96628 * 18 17 16 21 21 H 1.08994 * 109.46887 * 299.99714 * 1 2 3 22 22 H 1.09001 * 109.46945 * 60.00377 * 1 2 3 23 23 H 1.09002 * 109.47118 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.47378 * 65.00062 * 4 2 1 25 25 H 1.08998 * 109.47458 * 305.00523 * 4 2 1 26 26 H 0.97005 * 119.99656 * 359.72741 * 8 7 5 27 27 H 1.00903 * 111.00085 * 321.04984 * 13 2 1 28 28 H 1.08997 * 110.99206 * 272.12502 * 16 14 13 29 29 H 1.09005 * 110.99169 * 35.94602 * 16 14 13 30 30 H 1.08999 * 110.42587 * 204.24064 * 17 16 14 31 31 H 1.09006 * 110.30758 * 82.01754 * 17 16 14 32 32 H 1.09003 * 109.46895 * 299.15608 * 19 18 17 33 33 H 1.09000 * 109.47060 * 59.15729 * 19 18 17 34 34 H 1.08997 * 109.47150 * 179.15211 * 19 18 17 35 35 H 1.08994 * 109.89118 * 239.60288 * 20 18 17 36 36 H 1.09004 * 110.02038 * 118.49328 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3128 6 1 4.0789 -0.0855 0.5396 7 6 4.2304 -1.1936 2.3578 8 7 3.5765 -1.8379 3.2995 9 14 6.0927 -1.0683 2.4325 10 1 6.6955 -2.2210 1.7160 11 1 6.5299 0.1972 1.7901 12 1 6.5333 -1.0817 3.8505 13 7 2.0197 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3468 15 1 2.3518 1.2276 -2.0222 16 6 3.0860 -0.2980 -3.4093 17 6 2.5236 0.3395 -4.7068 18 7 1.0545 0.2934 -4.5473 19 6 0.4195 1.4576 -5.1791 20 6 0.7401 0.2362 -3.1080 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7517 -1.7716 1.2056 25 1 1.6054 -0.2618 2.1370 26 1 2.6093 -1.9026 3.2610 27 1 1.4495 -1.4980 -1.4100 28 1 4.0948 0.0586 -3.2013 29 1 3.0626 -1.3862 -3.4685 30 1 2.8291 -0.2393 -5.5784 31 1 2.8630 1.3713 -4.7993 32 1 0.7816 2.3704 -4.7058 33 1 0.6677 1.4755 -6.2403 34 1 -0.6618 1.3909 -5.0600 35 1 0.1791 -0.6717 -2.8867 36 1 0.1584 1.1113 -2.8180 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695817535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:15 Heat of formation + Delta-G solvation = -28.498427 kcal Electronic energy + Delta-G solvation = -14627.238435 eV Core-core repulsion = 12337.689725 eV Total energy + Delta-G solvation = -2289.548710 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33795 -37.72572 -35.08301 -33.03337 -30.74098 -28.82380 -28.48884 -26.01046 -24.92891 -22.06942 -21.83177 -21.51031 -18.88102 -17.14198 -16.99650 -15.73779 -15.62747 -15.52236 -15.19115 -14.94659 -14.29831 -14.24264 -13.78716 -13.38066 -13.16828 -13.06081 -12.82100 -12.59783 -12.50000 -12.39377 -12.14220 -11.97702 -11.92716 -11.75283 -11.26014 -10.59373 -10.46317 -9.44924 -9.01122 -8.56065 -6.21316 1.53463 1.63236 1.80341 2.62434 2.97390 3.23150 3.35304 3.73320 3.84383 3.96200 4.19413 4.30878 4.33442 4.35758 4.47551 4.50536 4.53603 4.67437 4.81810 4.87102 4.93762 4.99659 5.07653 5.09359 5.14113 5.19347 5.28397 5.48387 5.90604 6.07620 6.13517 6.31999 6.37146 6.61049 6.75175 7.56022 8.85019 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040449 B = 0.007381 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.058226 B = 3792.504377 C = 4339.692477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H 0.054 0.946 4 C 0.020 3.980 5 C -0.575 4.575 6 H 0.047 0.953 7 C -0.049 4.049 8 N -0.950 5.950 9 Si 1.118 2.882 10 H -0.277 1.277 11 H -0.272 1.272 12 H -0.286 1.286 13 N -0.668 5.668 14 C 0.071 3.929 15 H 0.068 0.932 16 C -0.116 4.116 17 C 0.046 3.954 18 N -0.545 5.545 19 C 0.019 3.981 20 C 0.024 3.976 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.054 0.946 24 H -0.013 1.013 25 H -0.013 1.013 26 H 0.252 0.748 27 H 0.339 0.661 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 6.413 -16.223 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.003 4.003 3 H 0.073 0.927 4 C -0.017 4.017 5 C -0.614 4.614 6 H 0.065 0.935 7 C -0.244 4.244 8 N -0.589 5.589 9 Si 0.941 3.059 10 H -0.203 1.203 11 H -0.197 1.197 12 H -0.211 1.211 13 N -0.298 5.298 14 C -0.041 4.041 15 H 0.087 0.913 16 C -0.155 4.155 17 C -0.081 4.081 18 N -0.270 5.270 19 C -0.129 4.129 20 C -0.106 4.106 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.005 0.995 25 H 0.005 0.995 26 H 0.061 0.939 27 H 0.158 0.842 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.190 5.642 -15.428 16.734 hybrid contribution -2.198 1.064 -0.254 2.455 sum -5.388 6.706 -15.682 17.887 Atomic orbital electron populations 1.22527 0.96480 1.01911 1.02148 1.21358 0.92124 0.96375 0.90430 0.92741 1.19182 0.96007 0.93959 0.92582 1.22285 0.93262 1.36315 1.09510 0.93511 1.27277 1.10979 0.93421 0.92723 1.70896 1.09351 1.42888 1.35795 0.82907 0.69782 0.77121 0.76104 1.20292 1.19712 1.21150 1.60370 1.57980 1.08849 1.02612 1.22860 0.94784 0.95841 0.90611 0.91341 1.22699 0.98501 1.01165 0.93141 1.23104 0.86678 1.00052 0.98283 1.63558 1.09620 1.41534 1.12253 1.22597 0.99936 0.90202 1.00174 1.23615 0.97543 1.01481 0.87934 0.92621 0.91285 0.92737 0.99512 0.99460 0.93851 0.84215 0.90923 0.91088 0.89040 0.92826 0.95456 0.90101 0.90993 0.91013 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.55 8.98 71.98 0.65 -4.90 16 2 C 0.11 4.33 2.53 44.91 0.11 4.45 16 3 H 0.05 2.29 7.46 -2.39 -0.02 2.27 16 4 C 0.02 1.06 3.97 29.85 0.12 1.18 16 5 C -0.58 -33.56 8.84 25.60 0.23 -33.33 16 6 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 7 C -0.05 -2.91 5.46 84.65 0.46 -2.45 16 8 N -0.95 -60.77 13.65 21.45 0.29 -60.48 16 9 Si 1.12 52.71 29.90 68.60 2.05 54.76 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 13 N -0.67 -24.83 5.86 -463.45 -2.72 -27.54 16 14 C 0.07 2.13 3.23 46.10 0.15 2.28 16 15 H 0.07 2.19 7.48 -2.39 -0.02 2.17 16 16 C -0.12 -3.17 6.78 32.06 0.22 -2.96 16 17 C 0.05 1.02 6.73 86.85 0.58 1.60 16 18 N -0.54 -12.59 5.45 -911.26 -4.96 -17.55 16 19 C 0.02 0.35 9.12 127.69 1.16 1.51 16 20 C 0.02 0.61 5.11 86.65 0.44 1.05 16 21 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.07 1.86 6.09 -2.39 -0.01 1.85 16 23 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 24 H -0.01 -0.76 8.01 -2.38 -0.02 -0.78 16 25 H -0.01 -0.71 8.00 -2.39 -0.02 -0.73 16 26 H 0.25 16.31 7.22 -92.70 -0.67 15.64 16 27 H 0.34 11.91 7.84 -89.69 -0.70 11.21 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.08 7.78 -2.38 -0.02 1.06 16 32 H 0.03 0.48 8.10 -2.39 -0.02 0.47 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.89 7.53 -2.39 -0.02 1.87 16 36 H 0.06 1.37 6.93 -2.38 -0.02 1.35 16 Total: -1.00 -66.35 284.11 -0.78 -67.13 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.43 Total: 15.26 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 4.13 Total: -31.57 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -7.38 Total: -105.57 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.05 Total: 54.76 kcal Total: -66.35 -0.78 -67.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.627 kcal (2) G-P(sol) polarization free energy of solvation -66.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds