Wall clock time and date at job start Mon Mar 30 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00362 * 9 7 5 12 12 H 1.48503 * 109.47111 * 240.00250 * 9 7 5 13 13 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 14 14 C 1.46904 * 110.99716 * 274.99847 * 13 2 1 15 15 H 1.09005 * 110.28564 * 34.29987 * 14 13 2 16 16 C 1.54259 * 110.32348 * 156.42218 * 14 13 2 17 17 C 1.54381 * 105.05881 * 118.89678 * 16 14 13 18 18 N 1.48559 * 104.59295 * 23.85244 * 17 16 14 19 19 C 1.46908 * 110.99645 * 200.95949 * 18 17 16 20 20 C 1.48718 * 104.28721 * 320.57175 * 18 17 16 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 25 25 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 26 26 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 27 27 H 1.00900 * 110.99634 * 38.94573 * 13 2 1 28 28 H 1.09002 * 110.32472 * 237.79378 * 16 14 13 29 29 H 1.09002 * 110.32463 * 359.89930 * 16 14 13 30 30 H 1.08997 * 110.41366 * 142.63675 * 17 16 14 31 31 H 1.08997 * 110.40780 * 264.95727 * 17 16 14 32 32 H 1.08995 * 109.47350 * 60.12931 * 19 18 17 33 33 H 1.08999 * 109.46563 * 180.13157 * 19 18 17 34 34 H 1.08999 * 109.46905 * 300.12405 * 19 18 17 35 35 H 1.08996 * 110.39083 * 280.63440 * 20 18 17 36 36 H 1.09006 * 110.50424 * 158.14870 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.5839 -0.2929 -1.2651 11 1 6.6855 -2.4237 -2.4179 12 1 6.4872 -0.3670 -3.6873 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2698 0.9473 2.2972 16 6 2.0136 -0.5699 3.6686 17 6 3.3418 -0.2598 4.3918 18 7 3.7805 1.0423 3.8270 19 6 5.2230 1.2412 4.0214 20 6 3.4454 0.9467 2.3812 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.7516 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 4.0608 -2.2448 -4.0348 27 1 1.4495 -1.4979 1.4101 28 1 1.1682 -0.2328 4.2685 29 1 1.9314 -1.6377 3.4659 30 1 3.1785 -0.1726 5.4660 31 1 4.0788 -1.0349 4.1820 32 1 5.7707 0.4429 3.5207 33 1 5.5171 2.2028 3.6008 34 1 5.4515 1.2257 5.0871 35 1 4.1998 0.3624 1.8543 36 1 3.3588 1.9409 1.9428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695817542.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:21 Heat of formation + Delta-G solvation = -2.637025 kcal Electronic energy + Delta-G solvation = -14716.432348 eV Core-core repulsion = 12428.005073 eV Total energy + Delta-G solvation = -2288.427276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.88281 -36.06239 -32.84476 -31.61347 -29.23776 -27.47198 -27.08066 -24.79325 -22.94728 -21.06922 -20.02286 -19.52588 -16.21162 -15.89405 -15.52370 -14.46886 -14.35782 -14.01528 -13.81754 -13.36409 -12.84347 -12.40782 -12.24039 -11.79543 -11.57463 -11.39044 -11.31795 -11.28603 -10.94241 -10.73249 -10.63366 -10.47158 -10.30339 -9.99326 -9.22380 -8.95178 -8.32534 -8.24085 -7.55974 -5.86295 -3.83391 3.38054 3.45401 3.49812 4.19658 4.57460 4.87177 4.89960 4.96205 5.26694 5.48286 5.51111 5.60949 5.65726 5.79972 5.85441 5.88087 5.94478 5.96034 6.04032 6.12601 6.17922 6.30595 6.36337 6.53860 6.65170 6.96030 7.07319 7.17752 7.61466 7.73493 8.06602 8.08835 8.20787 8.62833 9.22010 9.77567 11.25987 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.009825 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.739706 B = 2849.240818 C = 3705.989658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.064 0.936 4 C 0.032 3.968 5 C -0.484 4.484 6 H 0.058 0.942 7 C 0.048 3.952 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.659 5.659 14 C 0.084 3.916 15 H 0.046 0.954 16 C -0.125 4.125 17 C 0.036 3.964 18 N -0.522 5.522 19 C 0.014 3.986 20 C 0.041 3.959 21 H 0.056 0.944 22 H 0.037 0.963 23 H 0.050 0.950 24 H 0.016 0.984 25 H 0.017 0.983 26 H 0.256 0.744 27 H 0.332 0.668 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 3.642 13.155 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.082 0.918 4 C -0.005 4.005 5 C -0.523 4.523 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.290 5.290 14 C -0.027 4.027 15 H 0.063 0.937 16 C -0.164 4.164 17 C -0.092 4.092 18 N -0.246 5.246 19 C -0.135 4.135 20 C -0.087 4.087 21 H 0.075 0.925 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.151 0.849 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.838 4.091 13.095 13.842 hybrid contribution 0.582 -0.587 -0.352 0.898 sum -1.256 3.504 12.743 13.276 Atomic orbital electron populations 1.22553 0.99538 1.01140 1.00607 1.21828 0.89865 0.98131 0.92273 0.91800 1.19116 0.96223 0.95361 0.89784 1.21179 0.91914 1.32549 1.06643 0.92389 1.25009 0.97879 0.96032 0.96126 1.69977 1.35001 1.37156 1.12413 0.86605 0.86655 0.77511 0.77588 1.19955 1.21357 1.21397 1.60661 1.57757 1.08234 1.02356 1.22161 0.96214 0.94224 0.90112 0.93655 1.22498 0.97268 1.00503 0.96097 1.23012 0.96439 0.90696 0.99042 1.65400 1.15358 1.30944 1.12878 1.22471 0.88435 1.01315 1.01237 1.23243 0.97483 1.00258 0.87709 0.92512 0.94407 0.93070 0.96554 0.96502 0.93436 0.84912 0.91518 0.90687 0.90839 0.93648 0.95105 0.91456 0.91830 0.91464 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 9.15 37.16 0.34 -2.69 16 2 C 0.09 1.78 2.39 -67.71 -0.16 1.62 16 3 H 0.06 1.33 7.78 -51.93 -0.40 0.93 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.48 -13.66 8.84 -34.44 -0.30 -13.96 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.31 16 8 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 N -0.66 -12.20 5.74 -98.29 -0.56 -12.77 16 14 C 0.08 1.34 3.15 -66.33 -0.21 1.13 16 15 H 0.05 0.72 7.19 -51.93 -0.37 0.35 16 16 C -0.13 -1.67 6.67 -25.35 -0.17 -1.84 16 17 C 0.04 0.48 6.49 -2.18 -0.01 0.47 16 18 N -0.52 -7.65 5.66 -238.09 -1.35 -8.99 16 19 C 0.01 0.19 9.53 60.07 0.57 0.76 16 20 C 0.04 0.69 6.10 -2.10 -0.01 0.68 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.04 0.56 7.47 -51.93 -0.39 0.18 16 23 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.33 5.73 7.82 -39.29 -0.31 5.42 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.97 7.54 -51.93 -0.39 0.58 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.62 7.98 -51.93 -0.41 0.21 16 32 H 0.03 0.42 7.98 -51.93 -0.41 0.00 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.31 7.82 -51.93 -0.41 0.91 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 288.88 15.07 4.35 4.35 Total: -1.00 -30.10 288.88 -8.47 -38.57 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.44 Total: 0.25 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.19 Total: -11.82 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -1.18 Total: -48.62 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.10 -8.47 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817542.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.938 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds