Wall clock time and date at job start Mon Mar 30 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00362 * 9 7 5 12 12 H 1.48503 * 109.47111 * 240.00250 * 9 7 5 13 13 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 14 14 C 1.46904 * 110.99716 * 274.99847 * 13 2 1 15 15 H 1.09005 * 110.28564 * 34.29987 * 14 13 2 16 16 C 1.54259 * 110.32348 * 156.42218 * 14 13 2 17 17 C 1.54381 * 105.05881 * 118.89678 * 16 14 13 18 18 N 1.48559 * 104.59295 * 23.85244 * 17 16 14 19 19 C 1.46908 * 110.99645 * 200.95949 * 18 17 16 20 20 C 1.48718 * 104.28721 * 320.57175 * 18 17 16 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 25 25 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 26 26 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 27 27 H 1.00900 * 110.99634 * 38.94573 * 13 2 1 28 28 H 1.09002 * 110.32472 * 237.79378 * 16 14 13 29 29 H 1.09002 * 110.32463 * 359.89930 * 16 14 13 30 30 H 1.08997 * 110.41366 * 142.63675 * 17 16 14 31 31 H 1.08997 * 110.40780 * 264.95727 * 17 16 14 32 32 H 1.08995 * 109.47350 * 60.12931 * 19 18 17 33 33 H 1.08999 * 109.46563 * 180.13157 * 19 18 17 34 34 H 1.08999 * 109.46905 * 300.12405 * 19 18 17 35 35 H 1.08996 * 110.39083 * 280.63440 * 20 18 17 36 36 H 1.09006 * 110.50424 * 158.14870 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.5839 -0.2929 -1.2651 11 1 6.6855 -2.4237 -2.4179 12 1 6.4872 -0.3670 -3.6873 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2226 2.3469 15 1 1.2698 0.9473 2.2972 16 6 2.0136 -0.5699 3.6686 17 6 3.3418 -0.2598 4.3918 18 7 3.7805 1.0423 3.8270 19 6 5.2230 1.2412 4.0214 20 6 3.4454 0.9467 2.3812 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.7516 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 4.0608 -2.2448 -4.0348 27 1 1.4495 -1.4979 1.4101 28 1 1.1682 -0.2328 4.2685 29 1 1.9314 -1.6377 3.4659 30 1 3.1785 -0.1726 5.4660 31 1 4.0788 -1.0349 4.1820 32 1 5.7707 0.4429 3.5207 33 1 5.5171 2.2028 3.6008 34 1 5.4515 1.2257 5.0871 35 1 4.1998 0.3624 1.8543 36 1 3.3588 1.9409 1.9428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695817542.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:21 Heat of formation + Delta-G solvation = -24.229788 kcal Electronic energy + Delta-G solvation = -14717.368681 eV Core-core repulsion = 12428.005073 eV Total energy + Delta-G solvation = -2289.363608 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11842 -37.57816 -34.82895 -33.10588 -30.56839 -29.25198 -28.48967 -25.97448 -24.93991 -22.28558 -21.29263 -21.14283 -18.38621 -17.16296 -16.84056 -16.45390 -15.59943 -15.40946 -15.20574 -14.70486 -14.27432 -14.07155 -13.72631 -13.38456 -13.22093 -13.02116 -12.62001 -12.52660 -12.40140 -12.37675 -12.13850 -12.05784 -11.70151 -11.68427 -11.10090 -11.07023 -10.49645 -9.51077 -9.01725 -8.10383 -6.14350 1.38140 1.38994 1.51372 2.45549 3.00801 3.23341 3.58570 3.73899 3.79545 4.17671 4.29124 4.40749 4.45018 4.51573 4.56231 4.58545 4.73183 4.79041 4.91694 4.94158 4.96842 5.07616 5.11021 5.16869 5.24619 5.32987 5.52019 5.65868 5.83130 5.90851 6.04095 6.35614 6.52365 6.76558 6.99916 7.50840 9.02091 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.009825 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.739706 B = 2849.240818 C = 3705.989658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.493 4.493 6 H 0.055 0.945 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.675 5.675 14 C 0.085 3.915 15 H 0.052 0.948 16 C -0.119 4.119 17 C 0.035 3.965 18 N -0.522 5.522 19 C 0.013 3.987 20 C 0.043 3.957 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.054 0.946 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.258 0.742 27 H 0.340 0.660 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.018 0.982 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 4.105 15.121 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.531 4.531 6 H 0.073 0.927 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.307 5.307 14 C -0.025 4.025 15 H 0.070 0.930 16 C -0.157 4.157 17 C -0.093 4.093 18 N -0.247 5.247 19 C -0.136 4.136 20 C -0.086 4.086 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.067 0.933 27 H 0.159 0.841 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.051 0.949 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.780 4.559 15.081 15.856 hybrid contribution 0.567 -0.724 -0.942 1.316 sum -1.212 3.835 14.140 14.701 Atomic orbital electron populations 1.22405 0.96642 1.01838 1.01877 1.21466 0.92092 0.96648 0.90781 0.92710 1.19003 0.95084 0.94215 0.91731 1.21496 0.93399 1.31915 1.06301 0.92719 1.25848 1.02708 0.95863 0.95908 1.70101 1.36886 1.38221 1.13121 0.85562 0.80947 0.77626 0.77851 1.19230 1.20916 1.20703 1.60477 1.58260 1.09128 1.02832 1.22181 0.95759 0.94208 0.90376 0.92981 1.22491 0.98193 1.00355 0.94635 1.23113 0.96068 0.89698 1.00391 1.65430 1.16413 1.31782 1.11029 1.22540 0.87354 1.00980 1.02698 1.23126 0.97145 0.99338 0.88972 0.92636 0.91689 0.92673 0.99040 0.99051 0.93318 0.84079 0.89255 0.90334 0.88299 0.94485 0.96294 0.91234 0.89414 0.94906 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.46 9.15 71.98 0.66 -4.80 16 2 C 0.10 4.02 2.39 44.91 0.11 4.13 16 3 H 0.05 2.29 7.78 -2.39 -0.02 2.27 16 4 C 0.04 1.95 4.65 29.85 0.14 2.09 16 5 C -0.49 -28.33 8.84 25.60 0.23 -28.10 16 6 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 7 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 8 N -0.94 -58.53 13.29 21.45 0.28 -58.24 16 9 Si 0.95 46.22 29.54 68.60 2.03 48.25 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 N -0.67 -24.57 5.74 -464.89 -2.67 -27.24 16 14 C 0.09 2.58 3.15 45.81 0.14 2.73 16 15 H 0.05 1.53 7.19 -2.38 -0.02 1.51 16 16 C -0.12 -2.82 6.67 31.49 0.21 -2.61 16 17 C 0.04 0.84 6.49 86.45 0.56 1.40 16 18 N -0.52 -14.34 5.66 -907.19 -5.13 -19.47 16 19 C 0.01 0.32 9.53 127.69 1.22 1.53 16 20 C 0.04 1.42 6.10 86.42 0.53 1.94 16 21 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.06 1.76 7.47 -2.39 -0.02 1.74 16 23 H 0.05 1.73 8.13 -2.38 -0.02 1.71 16 24 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 25 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 26 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.34 11.34 7.82 -89.69 -0.70 10.64 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.83 7.54 -2.39 -0.02 1.82 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 0.95 7.98 -2.39 -0.02 0.93 16 32 H 0.02 0.50 7.98 -2.39 -0.02 0.48 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.03 1.30 7.82 -2.39 -0.02 1.28 16 36 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -64.91 288.88 -0.91 -65.82 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.32 Total: 12.57 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.25 Total: -21.69 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -7.52 Total: -104.95 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -64.91 -0.91 -65.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695817542.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.592 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds