Wall clock time and date at job start Mon Mar 30 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50703 * 109.46970 * 175.00092 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00234 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47025 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47498 * 119.99753 * 9 7 5 12 12 H 1.48508 * 109.47386 * 240.00118 * 9 7 5 13 13 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 14 14 C 1.46904 * 110.99770 * 58.95488 * 13 2 1 15 15 C 1.46895 * 111.00230 * 295.00304 * 13 2 1 16 16 C 1.53783 * 113.61161 * 277.49498 * 15 13 2 17 17 C 1.53776 * 87.08192 * 220.01644 * 16 15 13 18 18 N 1.46903 * 113.61709 * 270.88632 * 17 16 15 19 19 C 1.53781 * 113.61657 * 179.97438 * 15 13 2 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 22 22 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 23 23 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 24 24 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 25 25 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 26 26 H 1.08992 * 109.47139 * 59.99870 * 14 13 2 27 27 H 1.08998 * 109.46871 * 180.02562 * 14 13 2 28 28 H 1.09004 * 109.46908 * 299.99719 * 14 13 2 29 29 H 1.08998 * 112.85440 * 48.79970 * 15 13 2 30 30 H 1.08997 * 113.61399 * 334.56944 * 16 15 13 31 31 H 1.09005 * 113.61218 * 105.47178 * 16 15 13 32 32 H 1.09000 * 113.61267 * 139.98093 * 17 16 15 33 33 H 1.00906 * 110.99560 * 277.49550 * 18 17 16 34 34 H 1.00891 * 110.99772 * 41.44804 * 18 17 16 35 35 H 1.08997 * 113.61492 * 254.52434 * 19 15 13 36 36 H 1.09000 * 113.61502 * 25.43329 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1935 -2.3578 8 7 3.5764 -1.8386 -3.2990 9 14 6.0919 -1.0611 -2.4369 10 1 6.5835 -0.2898 -1.2670 11 1 6.6863 -2.4218 -2.4184 12 1 6.4861 -0.3658 -3.6886 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0761 1.2459 15 6 1.6487 0.0391 2.4180 16 6 2.6034 1.1962 2.7565 17 6 2.4660 0.7747 4.2290 18 7 1.3484 1.4256 4.9257 19 6 2.1323 -0.6353 3.7127 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 1.7515 -1.7715 -1.2057 24 1 1.6053 -0.2617 -2.1370 25 1 4.0608 -2.2459 -4.0341 26 1 1.8762 -2.6150 0.3647 27 1 1.9053 -2.5656 2.1439 28 1 0.4384 -2.0742 1.2639 29 1 0.5957 0.3197 2.4393 30 1 3.6086 1.0641 2.3565 31 1 2.1881 2.1813 2.5438 32 1 3.4011 0.8257 4.7868 33 1 1.6094 2.3458 5.2471 34 1 0.5302 1.4668 4.3368 35 1 1.3369 -1.1283 4.2717 36 1 3.0088 -1.2683 3.5742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695862132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:38 Heat of formation + Delta-G solvation = -1.447923 kcal Electronic energy + Delta-G solvation = -14883.987337 eV Core-core repulsion = 12595.611625 eV Total energy + Delta-G solvation = -2288.375712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77201 -37.94956 -34.82954 -32.65570 -31.01536 -29.31176 -27.39357 -26.00627 -25.35724 -23.59639 -20.61019 -19.55243 -18.37581 -17.78889 -16.63759 -16.37091 -16.11196 -15.48219 -15.13251 -14.72292 -14.23428 -13.87277 -13.61599 -13.47201 -13.28883 -13.00637 -12.84683 -12.65357 -12.40572 -12.29685 -12.07453 -11.96323 -11.24548 -11.14498 -11.09129 -10.89481 -10.48760 -9.60899 -8.88318 -8.10955 -6.15840 1.40122 1.41142 1.54205 2.46528 3.16578 3.29458 3.57254 3.70631 3.83162 4.00493 4.12532 4.30837 4.37831 4.47589 4.56423 4.66453 4.77495 4.91273 4.97409 5.00782 5.06847 5.16597 5.20091 5.20795 5.27996 5.45868 5.48552 5.71903 5.89693 6.23706 6.33000 6.47443 6.58999 6.63009 6.98428 7.50208 9.01384 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035167 B = 0.008496 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.007284 B = 3294.783885 C = 3702.706950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.059 0.941 4 C 0.033 3.967 5 C -0.497 4.497 6 H 0.057 0.943 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.522 5.522 14 C 0.032 3.968 15 C 0.047 3.953 16 C -0.159 4.159 17 C 0.083 3.917 18 N -0.829 5.829 19 C -0.119 4.119 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.055 0.945 23 H -0.001 1.001 24 H -0.011 1.011 25 H 0.259 0.741 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.353 0.647 34 H 0.344 0.656 35 H 0.074 0.926 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 5.218 14.092 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 H 0.077 0.923 4 C -0.004 4.004 5 C -0.536 4.536 6 H 0.075 0.925 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.245 5.245 14 C -0.116 4.116 15 C -0.061 4.061 16 C -0.199 4.199 17 C -0.030 4.030 18 N -0.359 5.359 19 C -0.158 4.158 20 H 0.070 0.930 21 H 0.085 0.915 22 H 0.074 0.926 23 H 0.017 0.983 24 H 0.007 0.993 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.092 0.908 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.884 4.519 14.463 15.642 hybrid contribution 0.083 0.489 -1.586 1.662 sum -3.801 5.008 12.877 14.330 Atomic orbital electron populations 1.22379 0.97530 1.01608 1.01846 1.21535 0.91796 0.97132 0.90762 0.92304 1.19098 0.95305 0.94521 0.91497 1.21505 0.93215 1.32243 1.06619 0.92489 1.25862 1.02920 0.95667 0.95735 1.70101 1.37033 1.38054 1.13140 0.85519 0.80623 0.77689 0.77916 1.18941 1.20871 1.20798 1.62273 1.59097 1.01939 1.01182 1.22245 0.97282 0.90379 1.01715 1.23273 0.96953 0.96168 0.89721 1.23740 1.00319 0.97284 0.98594 1.22266 0.94839 0.94717 0.91210 1.58703 1.06384 1.27089 1.43710 1.23074 1.01639 0.96705 0.94355 0.93011 0.91535 0.92610 0.98256 0.99279 0.93270 0.93654 0.90834 0.95378 0.91612 0.90882 0.91827 0.88536 0.83292 0.84326 0.90767 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.93 8.55 71.98 0.62 -5.32 16 2 C 0.10 3.96 2.27 44.92 0.10 4.06 16 3 H 0.06 2.50 8.01 -2.39 -0.02 2.48 16 4 C 0.03 1.74 4.26 29.85 0.13 1.87 16 5 C -0.50 -28.56 8.84 25.60 0.23 -28.33 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 8 N -0.94 -58.29 13.29 21.44 0.28 -58.00 16 9 Si 0.96 45.86 29.54 68.60 2.03 47.89 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 N -0.52 -19.51 4.43 -868.73 -3.84 -23.36 16 14 C 0.03 1.14 8.63 127.69 1.10 2.24 16 15 C 0.05 1.36 2.66 45.44 0.12 1.48 16 16 C -0.16 -4.25 7.43 31.12 0.23 -4.02 16 17 C 0.08 1.81 5.18 45.45 0.24 2.04 16 18 N -0.83 -15.04 9.64 -166.44 -1.60 -16.65 16 19 C -0.12 -3.00 6.33 31.13 0.20 -2.80 16 20 H 0.05 1.76 6.38 -2.39 -0.02 1.75 16 21 H 0.07 1.89 6.38 -2.39 -0.02 1.87 16 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.00 -0.05 6.17 -2.39 -0.01 -0.06 16 24 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 25 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 26 H 0.04 1.95 6.22 -2.39 -0.01 1.93 16 27 H 0.07 2.31 6.91 -2.39 -0.02 2.29 16 28 H 0.03 0.92 6.28 -2.38 -0.01 0.90 16 29 H 0.07 1.78 5.84 -2.39 -0.01 1.77 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.35 5.07 9.08 -89.69 -0.81 4.26 16 34 H 0.34 5.98 8.15 -89.70 -0.73 5.25 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 2.28 7.90 -2.39 -0.02 2.26 16 Total: -1.00 -64.18 280.03 -0.20 -64.37 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -0.48 Total: 14.41 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 3.42 Total: -28.67 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -5.16 Total: -98.00 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -64.18 -0.20 -64.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695862132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.926 kcal (2) G-P(sol) polarization free energy of solvation -64.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds