Wall clock time and date at job start Mon Mar 30 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.53007 * 109.47012 * 180.02562 * 14 13 12 16 16 N 1.46898 * 109.46991 * 180.02562 * 15 14 13 17 17 C 1.47479 * 111.00228 * 74.02841 * 16 15 14 18 18 C 1.53514 * 87.92998 * 138.69934 * 17 16 15 19 19 C 1.47483 * 110.99627 * 170.00349 * 16 15 14 20 20 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 25 25 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 26 26 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 27 27 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 28 28 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 29 29 H 1.09001 * 109.47146 * 300.00243 * 15 14 13 30 30 H 1.08998 * 109.46587 * 60.00003 * 15 14 13 31 31 H 1.08994 * 113.48008 * 253.46636 * 17 16 15 32 32 H 1.08999 * 113.47764 * 23.93821 * 17 16 15 33 33 H 1.08998 * 114.17461 * 220.32545 * 18 17 16 34 34 H 1.09004 * 114.34003 * 87.63559 * 18 17 16 35 35 H 1.08998 * 113.47775 * 336.05818 * 19 16 15 36 36 H 1.09000 * 113.47641 * 106.52996 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4208 -4.7691 16 7 3.1549 -0.3047 -5.9476 17 6 2.1165 -1.2014 -6.4886 18 6 2.5486 -0.7622 -7.8947 19 6 3.0088 0.5096 -7.1686 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7089 1.1611 3.4845 24 1 2.9172 -1.1204 -1.0288 25 1 1.0871 0.6165 -2.5525 26 1 2.7588 1.0464 -2.1181 27 1 3.5917 -0.9260 -3.3683 28 1 1.9201 -1.3564 -3.8032 29 1 1.6669 0.8145 -4.9752 30 1 3.3384 1.2443 -4.5399 31 1 2.3047 -2.2557 -6.2860 32 1 1.1022 -0.8965 -6.2311 33 1 1.7216 -0.6062 -8.5874 34 1 3.3607 -1.3521 -8.3199 35 1 2.2327 1.2711 -7.0925 36 1 3.9533 0.9052 -7.5422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697336373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:29 Heat of formation + Delta-G solvation = 24.928102 kcal Electronic energy + Delta-G solvation = -13983.539812 eV Core-core repulsion = 11696.307850 eV Total energy + Delta-G solvation = -2287.231962 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03016 -36.24152 -33.62154 -31.78251 -29.11298 -26.88356 -25.95655 -25.16436 -23.07603 -20.83064 -20.00330 -19.67722 -16.49233 -16.10777 -15.83601 -15.23881 -14.68115 -14.29520 -13.67996 -13.43189 -12.81564 -12.60064 -12.30250 -11.91770 -11.51197 -11.35529 -11.20056 -10.97748 -10.77187 -10.66676 -10.59425 -10.46029 -10.15146 -10.07611 -9.78668 -8.96159 -8.79924 -8.45611 -7.22928 -6.00986 -4.07298 3.31238 3.37282 3.40724 3.92196 4.31993 4.41927 4.71443 4.91822 5.12384 5.26501 5.27886 5.30934 5.47522 5.55567 5.60506 5.66947 5.72505 5.80709 5.96774 6.10833 6.12820 6.29901 6.57258 6.63852 6.90440 7.01151 7.16031 7.26049 7.53470 7.80309 7.92414 8.29559 8.42744 8.71213 9.03928 9.58595 11.05477 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.076549 B = 0.004737 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.691139 B = 5909.420166 C = 6026.023855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.210 3.790 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.690 5.690 13 C 0.062 3.938 14 C -0.109 4.109 15 C 0.021 3.979 16 N -0.474 5.474 17 C -0.002 4.002 18 C -0.149 4.149 19 C -0.005 4.005 20 H 0.080 0.920 21 H 0.003 0.997 22 H 0.031 0.969 23 H 0.261 0.739 24 H 0.330 0.670 25 H 0.060 0.940 26 H 0.017 0.983 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -0.692 -16.560 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.102 3.898 3 H 0.018 0.982 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.321 5.321 13 C -0.068 4.068 14 C -0.147 4.147 15 C -0.108 4.108 16 N -0.196 5.196 17 C -0.131 4.131 18 C -0.186 4.186 19 C -0.134 4.134 20 H 0.099 0.901 21 H 0.022 0.978 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.147 0.853 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.024 -1.052 -16.326 16.485 hybrid contribution 0.189 0.586 1.049 1.217 sum 2.213 -0.465 -15.277 15.443 Atomic orbital electron populations 1.21709 0.97953 0.99274 0.99249 1.19111 0.92603 0.92334 0.85725 0.98238 1.21283 1.31396 1.12467 0.90493 0.92205 1.24933 0.95081 0.94992 0.99065 1.69904 1.36764 1.22904 1.23418 0.86511 0.79230 0.79315 0.82416 1.20612 1.19913 1.21280 1.60709 1.32077 1.33195 1.06089 1.21841 0.99377 0.94197 0.91418 1.21483 1.01842 0.98173 0.93220 1.22676 0.98598 0.97408 0.92087 1.68944 1.37821 1.11504 1.01347 1.23757 0.95228 1.00016 0.94113 1.23116 1.01482 0.97665 0.96362 1.23762 1.01385 0.96108 0.92154 0.90140 0.97830 0.95006 0.92955 0.85289 0.92182 0.96460 0.91671 0.91581 0.94131 0.90761 0.89773 0.91241 0.90897 0.89080 0.91492 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.19 37.16 0.34 -2.83 16 2 C 0.21 5.50 2.60 -68.87 -0.18 5.32 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.56 8.59 -34.44 -0.30 -14.86 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.89 11.32 55.43 0.63 -25.27 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 N -0.69 -15.34 6.30 -107.95 -0.68 -16.02 16 13 C 0.06 1.16 5.48 -3.82 -0.02 1.14 16 14 C -0.11 -1.68 5.58 -26.73 -0.15 -1.83 16 15 C 0.02 0.28 4.82 -3.82 -0.02 0.26 16 16 N -0.47 -5.85 6.41 -244.64 -1.57 -7.42 16 17 C 0.00 -0.02 7.00 -7.53 -0.05 -0.08 16 18 C -0.15 -1.28 8.47 -26.20 -0.22 -1.50 16 19 C 0.00 -0.05 7.70 -7.53 -0.06 -0.11 16 20 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 21 H 0.00 0.06 7.45 -51.93 -0.39 -0.32 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.33 7.18 8.22 -39.30 -0.32 6.86 16 25 H 0.06 1.14 7.44 -51.93 -0.39 0.75 16 26 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.04 7.67 -51.92 -0.40 0.64 16 29 H 0.04 0.52 7.56 -51.93 -0.39 0.12 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.73 7.70 -51.93 -0.40 0.33 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.62 7.77 -51.93 -0.40 0.21 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 288.30 15.07 4.34 4.34 Total: -1.00 -29.20 288.30 -9.37 -38.57 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.32 Total: 2.11 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.75 Total: -12.85 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -1.62 Total: -48.71 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.20 -9.37 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697336373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.495 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds