Wall clock time and date at job start Mon Mar 30 2020 03:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.53007 * 109.47012 * 180.02562 * 14 13 12 16 16 N 1.46898 * 109.46991 * 180.02562 * 15 14 13 17 17 C 1.47479 * 111.00228 * 74.02841 * 16 15 14 18 18 C 1.53514 * 87.92998 * 138.69934 * 17 16 15 19 19 C 1.47483 * 110.99627 * 170.00349 * 16 15 14 20 20 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 25 25 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 26 26 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 27 27 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 28 28 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 29 29 H 1.09001 * 109.47146 * 300.00243 * 15 14 13 30 30 H 1.08998 * 109.46587 * 60.00003 * 15 14 13 31 31 H 1.08994 * 113.48008 * 253.46636 * 17 16 15 32 32 H 1.08999 * 113.47764 * 23.93821 * 17 16 15 33 33 H 1.08998 * 114.17461 * 220.32545 * 18 17 16 34 34 H 1.09004 * 114.34003 * 87.63559 * 18 17 16 35 35 H 1.08998 * 113.47775 * 336.05818 * 19 16 15 36 36 H 1.09000 * 113.47641 * 106.52996 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4208 -4.7691 16 7 3.1549 -0.3047 -5.9476 17 6 2.1165 -1.2014 -6.4886 18 6 2.5486 -0.7622 -7.8947 19 6 3.0088 0.5096 -7.1686 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7089 1.1611 3.4845 24 1 2.9172 -1.1204 -1.0288 25 1 1.0871 0.6165 -2.5525 26 1 2.7588 1.0464 -2.1181 27 1 3.5917 -0.9260 -3.3683 28 1 1.9201 -1.3564 -3.8032 29 1 1.6669 0.8145 -4.9752 30 1 3.3384 1.2443 -4.5399 31 1 2.3047 -2.2557 -6.2860 32 1 1.1022 -0.8965 -6.2311 33 1 1.7216 -0.6062 -8.5874 34 1 3.3607 -1.3521 -8.3199 35 1 2.2327 1.2711 -7.0925 36 1 3.9533 0.9052 -7.5422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697336373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:28 Heat of formation + Delta-G solvation = 3.828798 kcal Electronic energy + Delta-G solvation = -13984.454747 eV Core-core repulsion = 11696.307850 eV Total energy + Delta-G solvation = -2288.146896 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.88428 -38.02240 -35.32544 -33.48391 -30.69508 -28.32520 -27.28836 -26.75204 -24.41026 -22.14283 -21.72857 -20.74298 -18.53020 -17.08921 -16.96419 -16.76182 -16.28975 -15.47425 -15.33571 -15.15025 -14.35933 -13.74036 -13.61899 -13.48259 -13.00809 -12.82368 -12.71468 -12.52957 -12.27744 -12.22125 -12.12617 -12.06930 -11.68530 -11.44876 -11.38311 -10.89956 -10.58877 -9.84530 -9.09416 -8.15059 -6.29737 1.42010 1.42931 1.53432 2.40700 3.02574 3.13458 3.51461 3.66592 3.93379 4.04796 4.16828 4.31212 4.48154 4.51216 4.52339 4.68519 4.72753 4.79770 4.84701 4.86703 4.99034 5.04827 5.13436 5.19324 5.22435 5.29787 5.41906 5.47550 5.65484 5.83602 6.10706 6.19796 6.44851 6.75319 6.97459 7.40862 8.90902 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.076549 B = 0.004737 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.691139 B = 5909.420166 C = 6026.023855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.212 3.788 3 H -0.032 1.032 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.275 1.275 10 H -0.267 1.267 11 H -0.282 1.282 12 N -0.688 5.688 13 C 0.065 3.935 14 C -0.094 4.094 15 C 0.028 3.972 16 N -0.495 5.495 17 C -0.009 4.009 18 C -0.134 4.134 19 C -0.007 4.007 20 H 0.057 0.943 21 H 0.021 0.979 22 H 0.028 0.972 23 H 0.263 0.737 24 H 0.332 0.668 25 H 0.057 0.943 26 H 0.012 0.988 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -1.287 -17.474 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 H -0.014 1.014 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.192 1.192 11 H -0.208 1.208 12 N -0.319 5.319 13 C -0.065 4.065 14 C -0.132 4.132 15 C -0.101 4.101 16 N -0.218 5.218 17 C -0.138 4.138 18 C -0.172 4.172 19 C -0.135 4.135 20 H 0.076 0.924 21 H 0.040 0.960 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.149 0.851 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.342 -1.651 -17.266 17.502 hybrid contribution 0.090 0.794 1.279 1.508 sum 2.432 -0.857 -15.988 16.194 Atomic orbital electron populations 1.21535 0.97655 0.98856 0.99017 1.18953 0.92862 0.90772 0.87059 1.01428 1.21601 1.31859 1.12766 0.91649 0.92235 1.25772 0.95120 0.95661 1.02143 1.70029 1.37469 1.24044 1.24248 0.85444 0.78882 0.78184 0.78433 1.20017 1.19154 1.20770 1.60645 1.32238 1.33485 1.05543 1.21877 0.99339 0.93892 0.91386 1.21297 1.01152 0.98121 0.92622 1.22541 0.98989 0.96745 0.91795 1.68941 1.38555 1.12504 1.01772 1.23839 0.94895 0.99547 0.95510 1.23083 1.02088 0.96501 0.95522 1.23851 1.02064 0.96658 0.90959 0.92381 0.96012 0.95314 0.92766 0.85070 0.92421 0.96996 0.92117 0.91762 0.93570 0.90942 0.90158 0.91163 0.88992 0.88569 0.90790 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.80 9.19 71.98 0.66 -5.14 16 2 C 0.21 11.26 2.60 44.17 0.11 11.37 16 3 H -0.03 -1.86 7.80 -2.39 -0.02 -1.88 16 4 C -0.54 -30.53 8.59 25.60 0.22 -30.31 16 5 H 0.06 3.29 7.62 -2.91 -0.02 3.26 16 6 C 0.01 0.69 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 8 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.69 -30.60 6.30 -495.46 -3.12 -33.72 16 13 C 0.07 2.42 5.48 86.30 0.47 2.89 16 14 C -0.09 -2.81 5.58 30.59 0.17 -2.64 16 15 C 0.03 0.72 4.82 86.31 0.42 1.13 16 16 N -0.50 -11.43 6.41 -927.90 -5.95 -17.38 16 17 C -0.01 -0.18 7.00 83.58 0.58 0.41 16 18 C -0.13 -1.97 8.47 30.94 0.26 -1.71 16 19 C -0.01 -0.12 7.70 83.58 0.64 0.53 16 20 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 21 H 0.02 0.99 7.45 -2.38 -0.02 0.97 16 22 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.33 14.45 8.22 -89.70 -0.74 13.71 16 25 H 0.06 2.16 7.44 -2.39 -0.02 2.14 16 26 H 0.01 0.45 8.05 -2.39 -0.02 0.44 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 1.96 7.67 -2.38 -0.02 1.94 16 29 H 0.05 1.11 7.56 -2.39 -0.02 1.09 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.35 7.70 -2.39 -0.02 1.34 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.19 7.77 -2.39 -0.02 1.17 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -61.27 288.30 -2.52 -63.79 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.29 Total: 17.17 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.00 Total: -22.32 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -8.83 Total: -104.66 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -61.27 -2.52 -63.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697336373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.615 kcal (2) G-P(sol) polarization free energy of solvation -61.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds