Wall clock time and date at job start Mon Mar 30 2020 03:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00253 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99813 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46539 * 90.00506 * 9 7 5 11 11 H 1.48496 * 109.46783 * 210.00191 * 9 7 5 12 12 H 1.48494 * 109.47124 * 330.00366 * 9 7 5 13 13 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 14 14 C 1.46897 * 111.00355 * 84.99974 * 13 2 1 15 15 C 1.52994 * 109.47637 * 180.02562 * 14 13 2 16 16 N 1.46890 * 109.47416 * 180.02562 * 15 14 13 17 17 C 1.47484 * 111.00399 * 74.02742 * 16 15 14 18 18 C 1.53507 * 87.93452 * 138.70378 * 17 16 15 19 19 C 1.47483 * 111.00416 * 170.00090 * 16 15 14 20 20 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 21 21 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 24 24 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 25 25 H 0.96996 * 119.99949 * 179.97438 * 8 7 5 26 26 H 1.00901 * 110.99869 * 321.04664 * 13 2 1 27 27 H 1.09006 * 109.46948 * 300.00869 * 14 13 2 28 28 H 1.09006 * 109.47033 * 59.99701 * 14 13 2 29 29 H 1.09008 * 109.47073 * 300.00564 * 15 14 13 30 30 H 1.08997 * 109.47237 * 59.99919 * 15 14 13 31 31 H 1.08998 * 113.47967 * 253.47716 * 17 16 15 32 32 H 1.09003 * 113.46843 * 23.94046 * 17 16 15 33 33 H 1.09003 * 114.17062 * 220.33287 * 18 17 16 34 34 H 1.08995 * 114.34403 * 87.64092 * 18 17 16 35 35 H 1.09003 * 113.47175 * 336.06317 * 19 16 15 36 36 H 1.09000 * 113.47994 * 106.52752 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3129 6 1 4.0789 -0.0856 0.5397 7 6 4.2304 -1.1935 2.3579 8 7 5.5410 -1.1004 2.4136 9 14 3.3013 -2.1086 3.6955 10 1 3.1698 -3.5385 3.3170 11 1 4.0452 -2.0019 4.9763 12 1 1.9507 -1.5128 3.8563 13 7 2.0198 -0.6925 -1.1994 14 6 2.0826 0.2225 -2.3469 15 6 2.5952 -0.5332 -3.5744 16 7 2.6586 0.3819 -4.7217 17 6 3.7960 1.3120 -4.5937 18 6 4.0581 1.1100 -6.0927 19 6 3.3672 -0.2402 -5.8557 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 6.0253 -1.5071 3.1490 26 1 1.4496 -1.4979 -1.4100 27 1 1.0872 0.6163 -2.5525 28 1 2.7590 1.0462 -2.1182 29 1 3.5906 -0.9273 -3.3690 30 1 1.9185 -1.3566 -3.8030 31 1 3.4987 2.3290 -4.3381 32 1 4.5967 0.9338 -3.9581 33 1 5.1133 1.0314 -6.3547 34 1 3.5030 1.7876 -6.7412 35 1 4.0534 -1.0326 -5.5568 36 1 2.7064 -0.5388 -6.6696 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697883730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:08 Heat of formation + Delta-G solvation = 29.751938 kcal Electronic energy + Delta-G solvation = -14223.180799 eV Core-core repulsion = 11936.158014 eV Total energy + Delta-G solvation = -2287.022785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.92367 -36.83571 -33.07030 -31.85524 -29.30128 -27.69879 -26.00551 -25.14302 -22.64570 -21.38178 -19.90103 -19.60810 -16.55135 -16.01770 -15.93549 -14.91643 -14.78521 -14.24102 -14.02089 -13.19080 -12.84827 -12.55408 -12.33447 -12.24123 -11.85613 -11.66474 -11.55649 -11.33987 -10.89374 -10.72120 -10.68178 -10.43181 -10.09595 -9.73727 -9.55367 -9.01116 -8.87023 -8.39706 -7.59183 -5.88376 -3.81932 3.38467 3.45418 3.48357 3.96618 4.41985 4.57126 4.79483 4.89276 5.13336 5.34514 5.42756 5.45875 5.48524 5.61192 5.64922 5.69851 5.75983 5.80381 5.88079 5.92165 6.03007 6.12773 6.18667 6.41347 6.44649 6.53632 6.84100 7.07153 7.20473 7.34647 7.83784 7.94284 8.12370 8.75484 9.22727 9.74945 11.25891 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037294 B = 0.006487 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.600974 B = 4315.214327 C = 4816.243638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.100 3.900 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.488 4.488 6 H 0.075 0.925 7 C 0.059 3.941 8 N -0.911 5.911 9 Si 0.876 3.124 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.664 5.664 14 C 0.069 3.931 15 C 0.021 3.979 16 N -0.476 5.476 17 C -0.003 4.003 18 C -0.148 4.148 19 C -0.003 4.003 20 H 0.042 0.958 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.017 0.983 24 H 0.011 0.989 25 H 0.259 0.741 26 H 0.329 0.671 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 2.468 -13.669 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.010 4.010 3 H 0.087 0.913 4 C -0.042 4.042 5 C -0.526 4.526 6 H 0.093 0.907 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.704 3.296 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.294 5.294 14 C -0.061 4.061 15 C -0.107 4.107 16 N -0.199 5.199 17 C -0.132 4.132 18 C -0.186 4.186 19 C -0.132 4.132 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.397 2.730 -13.428 15.122 hybrid contribution -0.563 -0.917 0.818 1.351 sum -6.960 1.814 -12.610 14.517 Atomic orbital electron populations 1.22589 0.99411 1.01210 1.00962 1.21539 0.89759 0.98256 0.91439 0.91256 1.19617 0.97827 0.95116 0.91657 1.21038 0.89557 1.33624 1.08365 0.90684 1.25022 0.94692 0.96376 0.97900 1.69916 1.06442 1.46398 1.32379 0.86849 0.80337 0.80597 0.81817 1.20588 1.21700 1.19335 1.60431 1.57649 1.08704 1.02648 1.21769 0.98924 0.95751 0.89693 1.22635 1.01440 0.95639 0.91014 1.68881 1.34179 1.11832 1.05018 1.23784 0.93588 0.99414 0.96427 1.23107 1.00808 0.97618 0.97071 1.23746 0.96914 0.96731 0.95785 0.93933 0.93070 0.92466 0.96530 0.97046 0.93122 0.85344 0.95680 0.91396 0.92750 0.91134 0.89943 0.90724 0.90808 0.89226 0.91265 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 9.16 37.16 0.34 -2.64 16 2 C 0.10 1.99 2.53 -67.71 -0.17 1.82 16 3 H 0.07 1.45 7.80 -51.93 -0.40 1.04 16 4 C 0.00 -0.11 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -14.12 9.39 -34.44 -0.32 -14.44 16 6 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.81 13.96 55.43 0.77 -28.03 16 9 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 13 N -0.66 -12.56 5.96 -106.73 -0.64 -13.20 16 14 C 0.07 1.12 5.59 -3.83 -0.02 1.10 16 15 C 0.02 0.31 5.08 -3.83 -0.02 0.29 16 16 N -0.48 -6.30 6.41 -244.66 -1.57 -7.87 16 17 C 0.00 -0.04 7.00 -7.54 -0.05 -0.09 16 18 C -0.15 -1.45 8.47 -26.20 -0.22 -1.67 16 19 C 0.00 -0.03 7.70 -7.54 -0.06 -0.09 16 20 H 0.04 0.63 7.45 -51.93 -0.39 0.24 16 21 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 24 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.33 5.68 8.47 -39.29 -0.33 5.35 16 27 H 0.03 0.40 7.44 -51.93 -0.39 0.01 16 28 H 0.07 1.20 7.58 -51.93 -0.39 0.81 16 29 H 0.05 0.86 7.56 -51.92 -0.39 0.47 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.98 7.70 -51.93 -0.40 0.58 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.74 7.77 -51.93 -0.40 0.34 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 288.50 15.07 4.35 4.35 Total: -1.00 -31.25 288.50 -8.90 -40.15 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.41 Total: 1.25 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.73 Total: -14.25 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -1.43 Total: -49.09 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.25 -8.90 -40.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697883730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.900 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds