Wall clock time and date at job start Mon Mar 30 2020 03:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00253 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99813 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46539 * 90.00506 * 9 7 5 11 11 H 1.48496 * 109.46783 * 210.00191 * 9 7 5 12 12 H 1.48494 * 109.47124 * 330.00366 * 9 7 5 13 13 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 14 14 C 1.46897 * 111.00355 * 84.99974 * 13 2 1 15 15 C 1.52994 * 109.47637 * 180.02562 * 14 13 2 16 16 N 1.46890 * 109.47416 * 180.02562 * 15 14 13 17 17 C 1.47484 * 111.00399 * 74.02742 * 16 15 14 18 18 C 1.53507 * 87.93452 * 138.70378 * 17 16 15 19 19 C 1.47483 * 111.00416 * 170.00090 * 16 15 14 20 20 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 21 21 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 24 24 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 25 25 H 0.96996 * 119.99949 * 179.97438 * 8 7 5 26 26 H 1.00901 * 110.99869 * 321.04664 * 13 2 1 27 27 H 1.09006 * 109.46948 * 300.00869 * 14 13 2 28 28 H 1.09006 * 109.47033 * 59.99701 * 14 13 2 29 29 H 1.09008 * 109.47073 * 300.00564 * 15 14 13 30 30 H 1.08997 * 109.47237 * 59.99919 * 15 14 13 31 31 H 1.08998 * 113.47967 * 253.47716 * 17 16 15 32 32 H 1.09003 * 113.46843 * 23.94046 * 17 16 15 33 33 H 1.09003 * 114.17062 * 220.33287 * 18 17 16 34 34 H 1.08995 * 114.34403 * 87.64092 * 18 17 16 35 35 H 1.09003 * 113.47175 * 336.06317 * 19 16 15 36 36 H 1.09000 * 113.47994 * 106.52752 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3129 6 1 4.0789 -0.0856 0.5397 7 6 4.2304 -1.1935 2.3579 8 7 5.5410 -1.1004 2.4136 9 14 3.3013 -2.1086 3.6955 10 1 3.1698 -3.5385 3.3170 11 1 4.0452 -2.0019 4.9763 12 1 1.9507 -1.5128 3.8563 13 7 2.0198 -0.6925 -1.1994 14 6 2.0826 0.2225 -2.3469 15 6 2.5952 -0.5332 -3.5744 16 7 2.6586 0.3819 -4.7217 17 6 3.7960 1.3120 -4.5937 18 6 4.0581 1.1100 -6.0927 19 6 3.3672 -0.2402 -5.8557 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.6053 -0.2617 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 6.0253 -1.5071 3.1490 26 1 1.4496 -1.4979 -1.4100 27 1 1.0872 0.6163 -2.5525 28 1 2.7590 1.0462 -2.1182 29 1 3.5906 -0.9273 -3.3690 30 1 1.9185 -1.3566 -3.8030 31 1 3.4987 2.3290 -4.3381 32 1 4.5967 0.9338 -3.9581 33 1 5.1133 1.0314 -6.3547 34 1 3.5030 1.7876 -6.7412 35 1 4.0534 -1.0326 -5.5568 36 1 2.7064 -0.5388 -6.6696 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697883730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:08 Heat of formation + Delta-G solvation = 5.749852 kcal Electronic energy + Delta-G solvation = -14224.221607 eV Core-core repulsion = 11936.158014 eV Total energy + Delta-G solvation = -2288.063593 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91113 -38.36782 -34.96530 -33.56260 -30.76912 -29.39044 -26.99978 -26.29764 -24.57234 -22.66875 -21.37383 -20.76401 -18.78056 -17.10406 -17.05213 -16.50185 -15.95799 -15.85673 -15.59092 -14.87651 -14.23227 -14.10228 -13.77720 -13.51275 -13.39462 -13.16503 -12.96965 -12.55665 -12.34730 -12.11152 -11.94145 -11.71300 -11.68387 -11.46837 -11.38380 -11.13281 -10.67928 -9.91437 -9.05930 -8.17928 -6.17147 1.38227 1.39998 1.51294 2.42733 2.88875 3.17116 3.48809 3.63537 3.93149 3.95244 4.16618 4.19867 4.41169 4.43226 4.49786 4.54490 4.59780 4.71187 4.77756 4.83383 4.89656 4.96181 4.98239 5.12794 5.20152 5.26663 5.28645 5.34459 5.50450 5.75771 6.03244 6.30106 6.48582 6.71651 6.90503 7.43528 8.99834 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037294 B = 0.006487 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.600974 B = 4315.214327 C = 4816.243638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.002 4.002 5 C -0.491 4.491 6 H 0.029 0.971 7 C -0.007 4.007 8 N -0.961 5.961 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.246 1.246 13 N -0.686 5.686 14 C 0.079 3.921 15 C 0.031 3.969 16 N -0.486 5.486 17 C -0.013 4.013 18 C -0.132 4.132 19 C -0.004 4.004 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.022 0.978 24 H 0.017 0.983 25 H 0.261 0.739 26 H 0.340 0.660 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 1.901 -14.199 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.008 4.008 3 H 0.069 0.931 4 C -0.040 4.040 5 C -0.530 4.530 6 H 0.047 0.953 7 C -0.201 4.201 8 N -0.604 5.604 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.170 1.170 13 N -0.318 5.318 14 C -0.051 4.051 15 C -0.098 4.098 16 N -0.208 5.208 17 C -0.142 4.142 18 C -0.169 4.169 19 C -0.133 4.133 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.040 0.960 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.159 0.841 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.590 2.170 -13.981 16.552 hybrid contribution 0.189 -0.680 0.903 1.146 sum -8.401 1.489 -13.079 15.615 Atomic orbital electron populations 1.22421 0.95776 1.02431 1.02253 1.21338 0.92549 0.96575 0.90295 0.93124 1.19582 0.94388 0.95987 0.94067 1.21302 0.92229 1.32488 1.06958 0.95292 1.26008 0.95571 0.97642 1.00899 1.70093 1.08557 1.48089 1.33639 0.85664 0.79641 0.79268 0.77998 1.19642 1.21505 1.16969 1.60287 1.58507 1.09732 1.03253 1.21650 0.98988 0.94924 0.89535 1.22486 1.00377 0.95943 0.90963 1.68895 1.34945 1.12015 1.04994 1.23827 0.92955 0.99086 0.98314 1.23085 1.01883 0.96879 0.95063 1.23832 0.97081 0.97273 0.95096 0.92168 0.91840 0.91691 0.96007 0.96443 0.93045 0.84132 0.94490 0.93630 0.94781 0.90028 0.90008 0.92432 0.89343 0.87875 0.91407 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.05 9.16 71.98 0.66 -4.39 16 2 C 0.10 4.02 2.53 44.92 0.11 4.13 16 3 H 0.05 2.15 7.80 -2.39 -0.02 2.13 16 4 C 0.00 -0.12 3.72 29.85 0.11 0.00 16 5 C -0.49 -29.10 9.39 25.60 0.24 -28.86 16 6 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 7 C -0.01 -0.41 5.47 84.65 0.46 0.05 16 8 N -0.96 -62.51 13.96 21.45 0.30 -62.21 16 9 Si 0.95 45.66 27.47 68.60 1.88 47.54 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 12 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 13 N -0.69 -25.81 5.96 -491.57 -2.93 -28.74 16 14 C 0.08 2.58 5.59 86.30 0.48 3.06 16 15 C 0.03 0.91 5.08 86.30 0.44 1.35 16 16 N -0.49 -12.41 6.41 -927.96 -5.95 -18.37 16 17 C -0.01 -0.31 7.00 83.58 0.58 0.28 16 18 C -0.13 -2.34 8.47 30.94 0.26 -2.07 16 19 C 0.00 -0.08 7.70 83.58 0.64 0.56 16 20 H 0.06 1.59 7.45 -2.39 -0.02 1.57 16 21 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 23 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 24 H 0.02 0.80 7.57 -2.39 -0.02 0.79 16 25 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 26 H 0.34 11.30 8.47 -89.69 -0.76 10.54 16 27 H 0.04 1.13 7.44 -2.38 -0.02 1.11 16 28 H 0.05 1.68 7.58 -2.38 -0.02 1.66 16 29 H 0.03 1.11 7.56 -2.38 -0.02 1.09 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.58 7.70 -2.39 -0.02 1.56 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.39 7.77 -2.39 -0.02 1.37 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -68.31 288.50 -2.49 -70.80 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.21 Total: 16.87 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 4.00 Total: -25.90 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -8.58 Total: -109.32 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.54 kcal Total: -68.31 -2.49 -70.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697883730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.549 kcal (2) G-P(sol) polarization free energy of solvation -68.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds