Wall clock time and date at job start Mon Mar 30 2020 03:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47090 * 2 1 4 4 N 1.46901 * 109.47518 * 120.00164 * 2 1 3 5 5 C 1.46904 * 110.99691 * 275.00134 * 4 2 1 6 6 C 1.50706 * 109.46676 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00138 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99722 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00073 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46845 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47399 * 119.99815 * 10 8 6 13 13 H 1.48498 * 109.47295 * 240.00422 * 10 8 6 14 14 C 1.52996 * 109.47170 * 240.00202 * 2 1 3 15 15 H 1.08993 * 109.50700 * 299.92056 * 14 2 1 16 16 C 1.53120 * 109.50345 * 59.99827 * 14 2 1 17 17 C 1.53120 * 109.16463 * 177.59323 * 16 14 2 18 18 C 1.53035 * 109.27898 * 302.34946 * 17 16 14 19 19 N 1.46845 * 109.52692 * 59.17290 * 18 17 16 20 20 C 1.46843 * 111.19807 * 298.26195 * 19 18 17 21 21 H 1.08998 * 109.47331 * 299.99401 * 1 2 3 22 22 H 1.09000 * 109.47670 * 60.00117 * 1 2 3 23 23 H 1.09003 * 109.47090 * 179.97438 * 1 2 3 24 24 H 1.00902 * 110.99849 * 38.95517 * 4 2 1 25 25 H 1.08996 * 109.47230 * 60.00302 * 5 4 2 26 26 H 1.08994 * 109.47304 * 299.99812 * 5 4 2 27 27 H 0.97000 * 119.99651 * 0.02562 * 9 8 6 28 28 H 1.09000 * 109.52549 * 297.50458 * 16 14 2 29 29 H 1.09001 * 109.52580 * 57.62730 * 16 14 2 30 30 H 1.08999 * 109.50094 * 62.28538 * 17 16 14 31 31 H 1.08997 * 109.50648 * 182.40396 * 17 16 14 32 32 H 1.09003 * 109.46134 * 179.19405 * 18 17 16 33 33 H 1.09004 * 109.45939 * 299.15665 * 18 17 16 34 34 H 1.00903 * 110.99667 * 62.35643 * 19 18 17 35 35 H 1.08998 * 109.46344 * 301.72200 * 20 19 18 36 36 H 1.09001 * 109.46413 * 181.75754 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5875 -0.5219 3.5560 7 1 2.8372 -1.5699 3.4795 8 6 2.7306 0.1349 4.7597 9 7 2.4261 1.4109 4.8530 10 14 3.3559 -0.7880 6.2587 11 1 3.6248 -2.2019 5.8928 12 1 4.6094 -0.1554 6.7423 13 1 2.3311 -0.7404 7.3323 14 6 2.0400 -0.7212 -1.2492 15 1 1.6781 -1.7493 -1.2491 16 6 1.5299 0.0001 -2.4999 17 6 2.0936 -0.6918 -3.7442 18 6 3.6224 -0.6888 -3.6751 19 7 4.0603 -1.3908 -2.4619 20 6 3.5704 -0.7172 -1.2526 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.4496 -1.4980 1.4100 25 1 1.0871 0.6162 2.5526 26 1 2.7588 1.0462 2.1182 27 1 2.1003 1.8898 4.0749 28 1 0.4409 -0.0380 -2.5238 29 1 1.8576 1.0395 -2.4802 30 1 1.7332 -1.7197 -3.7836 31 1 1.7686 -0.1571 -4.6366 32 1 4.0266 -1.1934 -4.5527 33 1 3.9827 0.3397 -3.6496 34 1 3.7716 -2.3575 -2.4795 35 1 3.9309 0.3113 -1.2384 36 1 3.9368 -1.2425 -0.3706 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699611112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:46 Heat of formation + Delta-G solvation = -26.262540 kcal Electronic energy + Delta-G solvation = -14589.017926 eV Core-core repulsion = 12299.566171 eV Total energy + Delta-G solvation = -2289.451755 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.11352 -36.07451 -33.26016 -31.64132 -30.61814 -28.48140 -25.63798 -23.72508 -22.84948 -21.98050 -20.52225 -19.85389 -16.86940 -15.82077 -15.07039 -14.74953 -14.43665 -14.00637 -13.78712 -13.67519 -12.96603 -12.68518 -12.50235 -12.04626 -11.83416 -11.50034 -11.37159 -11.16998 -10.96417 -10.83463 -10.68752 -10.59574 -10.27282 -10.11971 -9.97017 -8.62551 -8.40701 -8.19562 -7.34950 -6.36910 -4.05681 3.45425 3.49616 3.63527 4.44427 4.53374 4.74043 4.88537 4.97321 5.12786 5.29001 5.39995 5.49398 5.56980 5.60235 5.65650 5.71035 5.79447 5.90154 5.97960 6.09529 6.12625 6.19095 6.26226 6.43263 6.55098 6.69203 6.97730 7.16721 7.21904 7.52263 7.80681 8.16572 8.47769 8.59788 8.88313 9.66251 11.03013 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048963 B = 0.006460 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.722099 B = 4333.332098 C = 4663.592119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.068 0.932 4 N -0.675 5.675 5 C 0.185 3.815 6 C -0.594 4.594 7 H 0.056 0.944 8 C 0.014 3.986 9 N -0.916 5.916 10 Si 1.078 2.922 11 H -0.289 1.289 12 H -0.287 1.287 13 H -0.288 1.288 14 C -0.106 4.106 15 H 0.063 0.937 16 C -0.117 4.117 17 C -0.156 4.156 18 C 0.056 3.944 19 N -0.689 5.689 20 C 0.070 3.930 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.330 0.670 25 H -0.025 1.025 26 H 0.017 0.983 27 H 0.267 0.733 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.337 0.663 35 H 0.065 0.935 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -4.044 -15.063 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.024 4.024 3 H 0.086 0.914 4 N -0.304 5.304 5 C 0.058 3.942 6 C -0.633 4.633 7 H 0.075 0.925 8 C -0.190 4.190 9 N -0.552 5.552 10 Si 0.907 3.093 11 H -0.214 1.214 12 H -0.213 1.213 13 H -0.215 1.215 14 C -0.127 4.127 15 H 0.082 0.918 16 C -0.155 4.155 17 C -0.195 4.195 18 C -0.075 4.075 19 N -0.316 5.316 20 C -0.059 4.059 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.147 0.853 25 H -0.007 1.007 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.083 0.917 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.215 -3.477 -13.590 14.029 hybrid contribution -2.500 -0.177 -1.472 2.907 sum -2.715 -3.654 -15.062 15.735 Atomic orbital electron populations 1.22539 0.98421 1.01419 1.01513 1.21490 0.91676 0.97820 0.91406 0.91375 1.60636 1.55340 1.10141 1.04328 1.19666 0.94115 0.92325 0.88125 1.22066 1.47694 0.98431 0.95066 0.92545 1.25859 0.95361 0.96483 1.01277 1.70738 1.41908 1.08930 1.33658 0.83415 0.76547 0.74601 0.74762 1.21447 1.21324 1.21486 1.21795 0.97953 0.99308 0.93677 0.91837 1.21681 1.00149 0.99536 0.94150 1.22255 0.98150 1.00793 0.98298 1.22013 0.92459 0.99803 0.93179 1.60734 1.62663 1.06029 1.02189 1.21994 0.91629 0.99910 0.92385 0.92696 0.92870 0.93041 0.85305 1.00705 0.96527 0.92280 0.92078 0.92097 0.92304 0.91973 0.91358 0.91219 0.84653 0.91694 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.81 37.16 0.33 -2.49 16 2 C 0.09 1.51 2.17 -67.72 -0.15 1.36 16 3 H 0.07 1.27 7.80 -51.93 -0.40 0.87 16 4 N -0.68 -14.19 5.50 -107.99 -0.59 -14.78 16 5 C 0.18 4.80 4.55 -4.97 -0.02 4.77 16 6 C -0.59 -17.07 9.32 -34.44 -0.32 -17.39 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 9 N -0.92 -28.28 13.65 55.43 0.76 -27.52 16 10 Si 1.08 25.70 29.90 -169.99 -5.08 20.62 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 C -0.11 -1.53 2.11 -90.54 -0.19 -1.72 16 15 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.12 -1.43 4.86 -26.61 -0.13 -1.56 16 17 C -0.16 -1.63 6.08 -26.65 -0.16 -1.79 16 18 C 0.06 0.62 6.55 -3.84 -0.03 0.59 16 19 N -0.69 -9.04 6.87 -113.82 -0.78 -9.82 16 20 C 0.07 1.07 5.67 -3.83 -0.02 1.05 16 21 H 0.05 0.96 7.45 -51.93 -0.39 0.57 16 22 H 0.05 0.72 6.49 -51.93 -0.34 0.38 16 23 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 24 H 0.33 6.81 8.46 -39.29 -0.33 6.48 16 25 H -0.02 -0.67 7.30 -51.93 -0.38 -1.05 16 26 H 0.02 0.46 7.92 -51.93 -0.41 0.05 16 27 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 28 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.34 4.04 8.86 -39.29 -0.35 3.69 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.68 7.64 -51.93 -0.40 1.28 16 LS Contribution 281.47 15.07 4.24 4.24 Total: -1.00 -29.85 281.47 -8.47 -38.32 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.22 Total: 5.81 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -0.79 Total: -16.87 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.62 Total: -52.13 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.85 -8.47 -38.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699611112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.060 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds