Wall clock time and date at job start Mon Mar 30 2020 03:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47090 * 2 1 4 4 N 1.46901 * 109.47518 * 120.00164 * 2 1 3 5 5 C 1.46904 * 110.99691 * 275.00134 * 4 2 1 6 6 C 1.50706 * 109.46676 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00138 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99722 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00073 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46845 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47399 * 119.99815 * 10 8 6 13 13 H 1.48498 * 109.47295 * 240.00422 * 10 8 6 14 14 C 1.52996 * 109.47170 * 240.00202 * 2 1 3 15 15 H 1.08993 * 109.50700 * 299.92056 * 14 2 1 16 16 C 1.53120 * 109.50345 * 59.99827 * 14 2 1 17 17 C 1.53120 * 109.16463 * 177.59323 * 16 14 2 18 18 C 1.53035 * 109.27898 * 302.34946 * 17 16 14 19 19 N 1.46845 * 109.52692 * 59.17290 * 18 17 16 20 20 C 1.46843 * 111.19807 * 298.26195 * 19 18 17 21 21 H 1.08998 * 109.47331 * 299.99401 * 1 2 3 22 22 H 1.09000 * 109.47670 * 60.00117 * 1 2 3 23 23 H 1.09003 * 109.47090 * 179.97438 * 1 2 3 24 24 H 1.00902 * 110.99849 * 38.95517 * 4 2 1 25 25 H 1.08996 * 109.47230 * 60.00302 * 5 4 2 26 26 H 1.08994 * 109.47304 * 299.99812 * 5 4 2 27 27 H 0.97000 * 119.99651 * 0.02562 * 9 8 6 28 28 H 1.09000 * 109.52549 * 297.50458 * 16 14 2 29 29 H 1.09001 * 109.52580 * 57.62730 * 16 14 2 30 30 H 1.08999 * 109.50094 * 62.28538 * 17 16 14 31 31 H 1.08997 * 109.50648 * 182.40396 * 17 16 14 32 32 H 1.09003 * 109.46134 * 179.19405 * 18 17 16 33 33 H 1.09004 * 109.45939 * 299.15665 * 18 17 16 34 34 H 1.00903 * 110.99667 * 62.35643 * 19 18 17 35 35 H 1.08998 * 109.46344 * 301.72200 * 20 19 18 36 36 H 1.09001 * 109.46413 * 181.75754 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5875 -0.5219 3.5560 7 1 2.8372 -1.5699 3.4795 8 6 2.7306 0.1349 4.7597 9 7 2.4261 1.4109 4.8530 10 14 3.3559 -0.7880 6.2587 11 1 3.6248 -2.2019 5.8928 12 1 4.6094 -0.1554 6.7423 13 1 2.3311 -0.7404 7.3323 14 6 2.0400 -0.7212 -1.2492 15 1 1.6781 -1.7493 -1.2491 16 6 1.5299 0.0001 -2.4999 17 6 2.0936 -0.6918 -3.7442 18 6 3.6224 -0.6888 -3.6751 19 7 4.0603 -1.3908 -2.4619 20 6 3.5704 -0.7172 -1.2526 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.4496 -1.4980 1.4100 25 1 1.0871 0.6162 2.5526 26 1 2.7588 1.0462 2.1182 27 1 2.1003 1.8898 4.0749 28 1 0.4409 -0.0380 -2.5238 29 1 1.8576 1.0395 -2.4802 30 1 1.7332 -1.7197 -3.7836 31 1 1.7686 -0.1571 -4.6366 32 1 4.0266 -1.1934 -4.5527 33 1 3.9827 0.3397 -3.6496 34 1 3.7716 -2.3575 -2.4795 35 1 3.9309 0.3113 -1.2384 36 1 3.9368 -1.2425 -0.3706 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699611112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:46 Heat of formation + Delta-G solvation = -47.986559 kcal Electronic energy + Delta-G solvation = -14589.959950 eV Core-core repulsion = 12299.566171 eV Total energy + Delta-G solvation = -2290.393779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29173 -37.61187 -35.26117 -32.96676 -31.93241 -29.85495 -27.59050 -25.09786 -24.08715 -23.78834 -21.74289 -21.11794 -19.00288 -16.89303 -16.48367 -16.19575 -15.73713 -15.63859 -15.41150 -15.08475 -14.38346 -14.15696 -13.88679 -13.47773 -13.30195 -13.03342 -12.79146 -12.58030 -12.52395 -12.46390 -12.03671 -11.91367 -11.81187 -11.50769 -11.26704 -10.72611 -10.62461 -9.37316 -9.03057 -8.71790 -6.42597 1.52907 1.62617 1.79953 2.54843 3.12857 3.33702 3.45003 3.70871 3.95517 4.03279 4.14741 4.24690 4.35468 4.47578 4.51546 4.60555 4.65039 4.72523 4.84583 4.84793 4.99001 5.01583 5.06972 5.12555 5.17580 5.23110 5.33294 5.46310 5.74328 6.01861 6.12550 6.39306 6.53750 6.55955 6.70466 7.39851 8.67742 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048963 B = 0.006460 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.722099 B = 4333.332098 C = 4663.592119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.085 3.915 3 H 0.047 0.953 4 N -0.673 5.673 5 C 0.199 3.801 6 C -0.609 4.609 7 H 0.055 0.945 8 C -0.038 4.038 9 N -0.938 5.938 10 Si 1.128 2.872 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.277 1.277 14 C -0.094 4.094 15 H 0.070 0.930 16 C -0.114 4.114 17 C -0.148 4.148 18 C 0.053 3.947 19 N -0.694 5.694 20 C 0.078 3.922 21 H 0.029 0.971 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.334 0.666 25 H -0.044 1.044 26 H -0.010 1.010 27 H 0.253 0.747 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.345 0.655 35 H 0.047 0.953 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 -5.443 -16.380 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 H 0.066 0.934 4 N -0.302 5.302 5 C 0.071 3.929 6 C -0.647 4.647 7 H 0.074 0.926 8 C -0.236 4.236 9 N -0.576 5.576 10 Si 0.949 3.051 11 H -0.194 1.194 12 H -0.205 1.205 13 H -0.203 1.203 14 C -0.115 4.115 15 H 0.088 0.912 16 C -0.152 4.152 17 C -0.187 4.187 18 C -0.076 4.076 19 N -0.322 5.322 20 C -0.052 4.052 21 H 0.048 0.952 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.152 0.848 25 H -0.027 1.027 26 H 0.008 0.992 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.066 0.934 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.544 -4.884 -14.954 15.741 hybrid contribution -2.394 0.274 -1.155 2.672 sum -2.938 -4.610 -16.109 17.011 Atomic orbital electron populations 1.22435 0.96680 1.02298 1.01613 1.21598 0.93108 0.96835 0.91007 0.93428 1.60534 1.56328 1.09590 1.03770 1.19314 0.92096 0.92097 0.89402 1.22430 1.47437 0.98576 0.96213 0.92620 1.27480 0.94762 0.96476 1.04835 1.70876 1.43597 1.10034 1.33093 0.82791 0.76469 0.74311 0.71499 1.19411 1.20493 1.20315 1.21672 0.97162 0.99472 0.93163 0.91176 1.21668 1.00847 0.99061 0.93660 1.22195 0.97200 1.01347 0.97924 1.22103 0.93281 0.99475 0.92739 1.60675 1.62962 1.06561 1.02049 1.21741 0.92263 0.98626 0.92571 0.95172 0.90164 0.91719 0.84850 1.02679 0.99203 0.93793 0.90917 0.92717 0.91403 0.89949 0.89242 0.91946 0.83715 0.93434 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 8.81 71.98 0.63 -4.56 16 2 C 0.09 2.95 2.17 44.91 0.10 3.05 16 3 H 0.05 1.84 7.80 -2.39 -0.02 1.82 16 4 N -0.67 -28.85 5.50 -495.58 -2.73 -31.58 16 5 C 0.20 10.74 4.55 85.56 0.39 11.13 16 6 C -0.61 -35.56 9.32 25.60 0.24 -35.32 16 7 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 8 C -0.04 -2.26 5.46 84.65 0.46 -1.80 16 9 N -0.94 -59.18 13.65 21.45 0.29 -58.89 16 10 Si 1.13 51.27 29.90 68.60 2.05 53.32 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 14 C -0.09 -2.59 2.11 -10.74 -0.02 -2.61 16 15 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 16 C -0.11 -2.51 4.86 30.67 0.15 -2.36 16 17 C -0.15 -2.59 6.08 30.65 0.19 -2.40 16 18 C 0.05 1.06 6.55 86.33 0.57 1.62 16 19 N -0.69 -17.23 6.87 -514.01 -3.53 -20.76 16 20 C 0.08 2.37 5.67 86.33 0.49 2.86 16 21 H 0.03 1.05 7.45 -2.39 -0.02 1.03 16 22 H 0.08 2.00 6.49 -2.39 -0.02 1.98 16 23 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 24 H 0.33 13.83 8.46 -89.69 -0.76 13.07 16 25 H -0.04 -2.53 7.30 -2.39 -0.02 -2.55 16 26 H -0.01 -0.59 7.92 -2.39 -0.02 -0.61 16 27 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 28 H 0.07 1.46 6.57 -2.39 -0.02 1.44 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.34 7.60 8.86 -89.69 -0.79 6.81 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 2.37 7.64 -2.39 -0.02 2.35 16 Total: -1.00 -65.19 281.47 -1.12 -66.31 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -0.40 Total: 21.97 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 3.19 Total: -30.38 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -5.96 Total: -111.22 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.32 kcal Total: -65.19 -1.12 -66.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699611112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.326 kcal (2) G-P(sol) polarization free energy of solvation -65.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds