Wall clock time and date at job start Mon Mar 30 2020 03:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46844 * 2 1 4 4 C 1.50705 * 109.47410 * 240.00213 * 2 1 3 5 5 H 1.08002 * 119.99551 * 240.00031 * 4 2 1 6 6 C 1.37874 * 119.99742 * 59.99566 * 4 2 1 7 7 N 1.31509 * 120.00347 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99633 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47030 * 89.99827 * 8 6 4 10 10 H 1.48497 * 109.47159 * 209.99608 * 8 6 4 11 11 H 1.48503 * 109.47338 * 330.00219 * 8 6 4 12 12 N 1.46902 * 109.47515 * 120.00002 * 2 1 3 13 13 C 1.46906 * 110.99927 * 275.00362 * 12 2 1 14 14 C 1.53782 * 113.61135 * 252.49817 * 13 12 2 15 15 C 1.53784 * 87.07690 * 220.01760 * 14 13 12 16 16 N 1.46902 * 113.69163 * 139.99395 * 15 14 13 17 17 C 1.46897 * 111.00328 * 82.46068 * 16 15 14 18 18 C 1.46895 * 110.99903 * 206.41928 * 16 15 14 19 19 C 1.53772 * 113.61560 * 154.99927 * 13 12 2 20 20 H 1.09003 * 109.47111 * 299.99496 * 1 2 3 21 21 H 1.08999 * 109.47235 * 60.00466 * 1 2 3 22 22 H 1.09007 * 109.46333 * 180.02562 * 1 2 3 23 23 H 0.97000 * 120.00195 * 180.02562 * 7 6 4 24 24 H 1.00902 * 111.00001 * 38.94892 * 12 2 1 25 25 H 1.09006 * 112.84557 * 23.79799 * 13 12 2 26 26 H 1.08996 * 113.61443 * 334.55942 * 14 13 12 27 27 H 1.09001 * 113.61610 * 105.47408 * 14 13 12 28 28 H 1.09005 * 113.61275 * 270.88151 * 15 14 13 29 29 H 1.09006 * 109.46740 * 59.99831 * 17 16 15 30 30 H 1.08993 * 109.47192 * 180.02562 * 17 16 15 31 31 H 1.09003 * 109.47411 * 300.00386 * 17 16 15 32 32 H 1.09001 * 109.47387 * 59.99690 * 18 16 15 33 33 H 1.09007 * 109.47166 * 179.97438 * 18 16 15 34 34 H 1.09007 * 109.47509 * 299.99646 * 18 16 15 35 35 H 1.09002 * 113.61715 * 254.52893 * 19 13 12 36 36 H 1.08999 * 113.61416 * 25.42606 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4865 -0.1413 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 7 2.0198 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 3.5153 0.6157 2.7437 15 6 3.0600 0.4913 4.2073 16 7 4.0597 -0.1309 5.0856 17 6 5.0566 0.8528 5.5285 18 6 3.4176 -0.7836 6.2344 19 6 1.9846 -0.4876 3.7073 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0278 0.0005 23 1 0.7089 1.1614 -3.4844 24 1 1.4496 -1.4979 1.4101 25 1 1.4067 1.0722 2.2482 26 1 4.2656 -0.1207 2.4558 27 1 3.7852 1.6316 2.4552 28 1 2.6525 1.4153 4.6178 29 1 4.5590 1.6527 6.0770 30 1 5.7847 0.3656 6.1769 31 1 5.5660 1.2703 4.6599 32 1 2.7355 -1.5559 5.8790 33 1 4.1803 -1.2365 6.8680 34 1 2.8606 -0.0431 6.8085 35 1 1.0188 -0.3624 4.1968 36 1 2.3164 -1.5256 3.6828 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701486970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:36 Heat of formation + Delta-G solvation = 24.370845 kcal Electronic energy + Delta-G solvation = -14429.337123 eV Core-core repulsion = 12142.080997 eV Total energy + Delta-G solvation = -2287.256126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21567 -35.98968 -34.09826 -31.63528 -27.80849 -27.72904 -25.14984 -24.88934 -24.48066 -21.26089 -19.93639 -19.02522 -16.31720 -15.82518 -15.20293 -14.77893 -14.66828 -14.19547 -13.71977 -13.09338 -12.58154 -12.39289 -12.06573 -11.94809 -11.72786 -11.59125 -11.18410 -10.95293 -10.86409 -10.78618 -10.38436 -10.32779 -10.08658 -9.88110 -9.58726 -8.88355 -8.31201 -8.28512 -7.16652 -5.93235 -3.95977 3.36347 3.42475 3.47782 4.04559 4.49454 4.80657 5.06895 5.17021 5.23017 5.33894 5.38460 5.41753 5.54741 5.57758 5.60571 5.86079 5.88565 5.93618 6.03840 6.28448 6.43767 6.68847 6.69909 6.76229 6.88451 7.08314 7.15978 7.27981 7.46987 7.79247 7.96553 8.35668 8.62582 8.70587 9.11745 9.69269 11.13960 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054880 B = 0.006116 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.085580 B = 4576.970557 C = 4756.553279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.669 5.669 13 C 0.066 3.934 14 C -0.107 4.107 15 C 0.049 3.951 16 N -0.533 5.533 17 C 0.026 3.974 18 C 0.025 3.975 19 C -0.133 4.133 20 H 0.003 0.997 21 H 0.088 0.912 22 H 0.027 0.973 23 H 0.259 0.741 24 H 0.326 0.674 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -0.377 14.335 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.051 0.949 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.298 5.298 13 C -0.045 4.045 14 C -0.146 4.146 15 C -0.060 4.060 16 N -0.257 5.257 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.172 4.172 20 H 0.022 0.978 21 H 0.106 0.894 22 H 0.046 0.954 23 H 0.068 0.932 24 H 0.143 0.857 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.859 -0.542 13.747 14.289 hybrid contribution -1.172 0.426 -0.140 1.255 sum 2.687 -0.115 13.607 13.871 Atomic orbital electron populations 1.22449 1.00863 0.99114 1.00355 1.19226 0.89427 0.94411 0.86763 0.94914 1.21178 1.29972 1.12314 0.89649 0.91961 1.24952 0.95420 0.95212 0.99030 1.69885 1.37554 1.23264 1.23229 0.86518 0.79254 0.79221 0.82514 1.20894 1.21435 1.19867 1.60886 1.57493 1.08489 1.02978 1.22717 0.96262 0.95873 0.89690 1.23070 0.98550 1.01227 0.91747 1.23102 0.93052 0.96100 0.93713 1.62193 1.15161 1.30651 1.17667 1.22342 0.95541 0.94031 1.00358 1.22339 0.98885 0.98667 0.92442 1.23310 0.96989 0.99869 0.97002 0.97763 0.89362 0.95392 0.93162 0.85667 0.92071 0.88595 0.92655 0.92326 0.96126 0.91790 0.91186 0.91188 0.91853 0.96186 0.92558 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.93 37.16 0.33 -3.78 16 2 C 0.21 5.35 2.42 -68.86 -0.17 5.18 16 3 H 0.03 0.92 7.84 -51.92 -0.41 0.52 16 4 C -0.49 -13.85 8.84 -34.44 -0.30 -14.16 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.10 11.32 55.43 0.63 -25.47 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.67 -14.43 6.29 -100.09 -0.63 -15.06 16 13 C 0.07 1.20 3.84 -66.90 -0.26 0.95 16 14 C -0.11 -1.80 7.59 -25.92 -0.20 -2.00 16 15 C 0.05 0.70 3.22 -66.90 -0.22 0.48 16 16 N -0.53 -7.00 4.98 -242.19 -1.21 -8.20 16 17 C 0.03 0.29 9.56 60.06 0.57 0.86 16 18 C 0.02 0.27 9.33 60.06 0.56 0.83 16 19 C -0.13 -1.98 6.17 -25.93 -0.16 -2.14 16 20 H 0.00 0.07 7.74 -51.93 -0.40 -0.33 16 21 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 22 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.33 6.68 8.29 -39.29 -0.33 6.36 16 25 H 0.06 1.17 7.49 -51.93 -0.39 0.78 16 26 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.07 0.77 7.05 -51.93 -0.37 0.40 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.02 0.21 8.14 -51.92 -0.42 -0.22 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.42 7.89 -51.93 -0.41 1.01 16 LS Contribution 288.44 15.07 4.35 4.35 Total: -1.00 -28.80 288.44 -8.19 -36.99 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.38 Total: 2.96 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -1.21 Total: -48.73 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.80 -8.19 -36.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701486970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.359 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds