Wall clock time and date at job start Mon Mar 30 2020 03:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46844 * 2 1 4 4 C 1.50705 * 109.47410 * 240.00213 * 2 1 3 5 5 H 1.08002 * 119.99551 * 240.00031 * 4 2 1 6 6 C 1.37874 * 119.99742 * 59.99566 * 4 2 1 7 7 N 1.31509 * 120.00347 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99633 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47030 * 89.99827 * 8 6 4 10 10 H 1.48497 * 109.47159 * 209.99608 * 8 6 4 11 11 H 1.48503 * 109.47338 * 330.00219 * 8 6 4 12 12 N 1.46902 * 109.47515 * 120.00002 * 2 1 3 13 13 C 1.46906 * 110.99927 * 275.00362 * 12 2 1 14 14 C 1.53782 * 113.61135 * 252.49817 * 13 12 2 15 15 C 1.53784 * 87.07690 * 220.01760 * 14 13 12 16 16 N 1.46902 * 113.69163 * 139.99395 * 15 14 13 17 17 C 1.46897 * 111.00328 * 82.46068 * 16 15 14 18 18 C 1.46895 * 110.99903 * 206.41928 * 16 15 14 19 19 C 1.53772 * 113.61560 * 154.99927 * 13 12 2 20 20 H 1.09003 * 109.47111 * 299.99496 * 1 2 3 21 21 H 1.08999 * 109.47235 * 60.00466 * 1 2 3 22 22 H 1.09007 * 109.46333 * 180.02562 * 1 2 3 23 23 H 0.97000 * 120.00195 * 180.02562 * 7 6 4 24 24 H 1.00902 * 111.00001 * 38.94892 * 12 2 1 25 25 H 1.09006 * 112.84557 * 23.79799 * 13 12 2 26 26 H 1.08996 * 113.61443 * 334.55942 * 14 13 12 27 27 H 1.09001 * 113.61610 * 105.47408 * 14 13 12 28 28 H 1.09005 * 113.61275 * 270.88151 * 15 14 13 29 29 H 1.09006 * 109.46740 * 59.99831 * 17 16 15 30 30 H 1.08993 * 109.47192 * 180.02562 * 17 16 15 31 31 H 1.09003 * 109.47411 * 300.00386 * 17 16 15 32 32 H 1.09001 * 109.47387 * 59.99690 * 18 16 15 33 33 H 1.09007 * 109.47166 * 179.97438 * 18 16 15 34 34 H 1.09007 * 109.47509 * 299.99646 * 18 16 15 35 35 H 1.09002 * 113.61715 * 254.52893 * 19 13 12 36 36 H 1.08999 * 113.61416 * 25.42606 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4865 -0.1413 -5.1123 11 1 3.6294 -1.7582 -3.7122 12 7 2.0198 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 3.5153 0.6157 2.7437 15 6 3.0600 0.4913 4.2073 16 7 4.0597 -0.1309 5.0856 17 6 5.0566 0.8528 5.5285 18 6 3.4176 -0.7836 6.2344 19 6 1.9846 -0.4876 3.7073 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0278 0.0005 23 1 0.7089 1.1614 -3.4844 24 1 1.4496 -1.4979 1.4101 25 1 1.4067 1.0722 2.2482 26 1 4.2656 -0.1207 2.4558 27 1 3.7852 1.6316 2.4552 28 1 2.6525 1.4153 4.6178 29 1 4.5590 1.6527 6.0770 30 1 5.7847 0.3656 6.1769 31 1 5.5660 1.2703 4.6599 32 1 2.7355 -1.5559 5.8790 33 1 4.1803 -1.2365 6.8680 34 1 2.8606 -0.0431 6.8085 35 1 1.0188 -0.3624 4.1968 36 1 2.3164 -1.5256 3.6828 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701486970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:35 Heat of formation + Delta-G solvation = 4.440351 kcal Electronic energy + Delta-G solvation = -14430.201375 eV Core-core repulsion = 12142.080997 eV Total energy + Delta-G solvation = -2288.120378 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48502 -37.47849 -35.69080 -33.58694 -29.55645 -28.70413 -27.22829 -26.16757 -25.66438 -22.71689 -21.71467 -20.32709 -18.31000 -17.17162 -16.74928 -16.39786 -15.72706 -15.49955 -15.17036 -14.70298 -14.42081 -13.59890 -13.37734 -13.29187 -13.08574 -12.95697 -12.75367 -12.69094 -12.49574 -12.23119 -12.18008 -12.07273 -11.81617 -11.46140 -11.06176 -10.88706 -10.47148 -9.25479 -8.91868 -8.08007 -6.18996 1.43932 1.44572 1.56019 2.45740 3.04930 3.20283 3.62403 3.77291 3.82710 4.05770 4.14381 4.34222 4.51383 4.56178 4.71660 4.74630 4.75711 4.82913 4.88324 4.97839 5.03654 5.05895 5.08904 5.11481 5.29614 5.40782 5.52098 5.71216 5.87727 6.17464 6.21566 6.31716 6.70849 6.89435 6.98396 7.51267 8.97668 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054880 B = 0.006116 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.085580 B = 4576.970557 C = 4756.553279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.002 1.002 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.673 5.673 13 C 0.053 3.947 14 C -0.109 4.109 15 C 0.066 3.934 16 N -0.551 5.551 17 C 0.025 3.975 18 C 0.025 3.975 19 C -0.116 4.116 20 H 0.024 0.976 21 H 0.060 0.940 22 H 0.032 0.968 23 H 0.260 0.740 24 H 0.332 0.668 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.204 -1.065 15.546 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.303 5.303 13 C -0.058 4.058 14 C -0.148 4.148 15 C -0.043 4.043 16 N -0.275 5.275 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.154 4.154 20 H 0.043 0.957 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.150 0.850 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.046 -1.236 14.984 15.570 hybrid contribution -1.198 0.664 -0.470 1.448 sum 2.849 -0.572 14.514 14.802 Atomic orbital electron populations 1.22247 1.00007 0.99242 0.99956 1.18961 0.89951 0.92520 0.87858 0.98405 1.21471 1.30280 1.12374 0.91160 0.92832 1.25728 0.95511 0.95882 1.01925 1.70012 1.38215 1.24305 1.23926 0.85510 0.78782 0.78216 0.78807 1.19997 1.20984 1.19610 1.60767 1.57290 1.09093 1.03120 1.22844 0.97093 0.95659 0.90222 1.23003 0.97219 1.00319 0.94271 1.22875 0.92702 0.96304 0.92398 1.62139 1.15255 1.31253 1.18834 1.22380 0.95428 0.94112 1.00368 1.22388 0.99385 0.98680 0.91836 1.23168 0.98279 0.99558 0.94384 0.95688 0.92110 0.94846 0.93053 0.85012 0.93050 0.90342 0.93159 0.91366 0.95243 0.90158 0.92063 0.91282 0.90368 0.95345 0.90634 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.59 8.93 71.98 0.64 -6.95 16 2 C 0.22 11.22 2.42 44.17 0.11 11.32 16 3 H 0.00 -0.12 7.84 -2.38 -0.02 -0.14 16 4 C -0.51 -29.30 8.84 25.60 0.23 -29.08 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.42 5.30 84.65 0.45 0.87 16 7 N -0.92 -54.28 11.32 21.45 0.24 -54.03 16 8 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 N -0.67 -29.13 6.29 -470.58 -2.96 -32.09 16 13 C 0.05 1.91 3.84 45.44 0.17 2.08 16 14 C -0.11 -3.66 7.59 31.12 0.24 -3.42 16 15 C 0.07 1.77 3.22 45.44 0.15 1.91 16 16 N -0.55 -13.24 4.98 -920.15 -4.58 -17.82 16 17 C 0.03 0.51 9.56 127.69 1.22 1.73 16 18 C 0.02 0.47 9.33 127.69 1.19 1.66 16 19 C -0.12 -3.21 6.17 31.12 0.19 -3.02 16 20 H 0.02 1.07 7.74 -2.39 -0.02 1.05 16 21 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 22 H 0.03 1.55 8.13 -2.38 -0.02 1.53 16 23 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 24 H 0.33 13.45 8.29 -89.69 -0.74 12.71 16 25 H 0.05 1.96 7.49 -2.38 -0.02 1.94 16 26 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 31 H 0.06 1.32 8.10 -2.39 -0.02 1.31 16 32 H 0.07 1.32 7.05 -2.39 -0.02 1.30 16 33 H 0.08 1.25 8.12 -2.38 -0.02 1.23 16 34 H 0.03 0.49 8.14 -2.38 -0.02 0.48 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 2.62 7.89 -2.39 -0.02 2.60 16 Total: -1.00 -61.22 288.44 -0.40 -61.62 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.29 Total: 18.40 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 4.59 Total: -22.90 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -7.30 Total: -103.94 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -61.22 -0.40 -61.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701486970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.062 kcal (2) G-P(sol) polarization free energy of solvation -61.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds