Wall clock time and date at job start Mon Mar 30 2020 02:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46849 * 2 1 4 4 C 1.53000 * 109.47293 * 239.99716 * 2 1 3 5 5 C 1.50699 * 109.47230 * 174.99691 * 4 2 1 6 6 H 1.08005 * 120.00138 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00174 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99716 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00141 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47028 * 59.99368 * 9 7 5 11 11 H 1.48494 * 109.47264 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47102 * 299.99763 * 9 7 5 13 13 N 1.46893 * 109.47283 * 119.99637 * 2 1 3 14 14 C 1.48563 * 111.00174 * 50.55468 * 13 2 1 15 15 C 1.54382 * 104.59468 * 200.96030 * 14 13 2 16 16 H 1.09004 * 110.32043 * 142.75110 * 15 14 13 17 17 N 1.46897 * 110.40932 * 264.90899 * 15 14 13 18 18 C 1.54260 * 105.06207 * 23.85406 * 15 14 13 19 19 C 1.48564 * 111.00310 * 295.13657 * 13 2 1 20 20 H 1.09004 * 110.40656 * 40.26084 * 19 13 2 21 21 C 1.52997 * 110.41161 * 277.82295 * 19 13 2 22 22 H 1.09004 * 109.46831 * 172.74359 * 1 2 3 23 23 H 1.09000 * 109.47265 * 292.74374 * 1 2 3 24 24 H 1.09002 * 109.47119 * 52.74522 * 1 2 3 25 25 H 1.09000 * 109.47228 * 294.99995 * 4 2 1 26 26 H 1.09002 * 109.46734 * 55.00111 * 4 2 1 27 27 H 0.97006 * 119.99908 * 180.02562 * 8 7 5 28 28 H 1.09000 * 110.40769 * 82.18042 * 14 13 2 29 29 H 1.08996 * 110.50659 * 319.79245 * 14 13 2 30 30 H 1.00893 * 111.00295 * 295.69341 * 17 15 14 31 31 H 1.00910 * 110.99810 * 59.64635 * 17 15 14 32 32 H 1.08998 * 110.32559 * 118.89270 * 18 15 14 33 33 H 1.09000 * 110.32355 * 241.10019 * 18 15 14 34 34 H 1.09005 * 109.47312 * 303.36703 * 21 19 13 35 35 H 1.09002 * 109.47540 * 63.37090 * 21 19 13 36 36 H 1.09005 * 109.47083 * 183.36898 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0853 -0.5396 7 6 4.2304 -1.1926 -2.3582 8 7 3.5764 -1.8370 -3.2998 9 14 6.0921 -1.0613 -2.4366 10 1 6.6839 -1.6881 -1.2274 11 1 6.5872 -1.7613 -3.6490 12 1 6.4854 0.3694 -2.4952 13 7 2.0197 -0.6924 1.1994 14 6 1.3664 -2.0178 1.3531 15 6 1.5399 -2.3661 2.8471 16 1 0.6519 -2.8744 3.2229 17 7 2.7287 -3.2066 3.0424 18 6 1.7210 -1.0085 3.5568 19 6 1.6417 0.0459 2.4320 20 1 0.6270 0.4346 2.3462 21 6 2.6297 1.1837 2.6966 22 1 -0.3633 -1.0195 -0.1298 23 1 -0.3634 0.3973 0.9477 24 1 -0.3633 0.6221 -0.8180 25 1 1.7517 -1.7716 -1.2055 26 1 1.6054 -0.2618 -2.1369 27 1 4.0608 -2.2438 -4.0353 28 1 1.8630 -2.7609 0.7293 29 1 0.3086 -1.9540 1.0979 30 1 2.6211 -4.0979 2.5819 31 1 3.5619 -2.7339 2.7250 32 1 0.9219 -0.8503 4.2810 33 1 2.6928 -0.9651 4.0486 34 1 3.6400 0.7798 2.7625 35 1 2.5795 1.9055 1.8813 36 1 2.3735 1.6766 3.6345 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702641219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:21 Heat of formation + Delta-G solvation = -25.370504 kcal Electronic energy + Delta-G solvation = -15141.461855 eV Core-core repulsion = 12852.048782 eV Total energy + Delta-G solvation = -2289.413073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67457 -36.45504 -34.68530 -33.47995 -30.72545 -29.30001 -28.71522 -26.25820 -25.17498 -22.55203 -21.05077 -19.98069 -18.36597 -17.62429 -16.52388 -16.24210 -16.02099 -15.39470 -15.11949 -14.47130 -14.25738 -13.89069 -13.53110 -13.51183 -13.07496 -12.93169 -12.73468 -12.54611 -12.48560 -12.27763 -12.14065 -11.88782 -11.53976 -11.41634 -11.15337 -11.01614 -10.50242 -9.58629 -9.02195 -8.12144 -6.17459 1.40172 1.42664 1.50245 2.45326 3.15986 3.28312 3.60385 3.84168 3.97679 4.13874 4.30321 4.34946 4.44279 4.49493 4.60233 4.62580 4.75942 4.82738 4.94559 5.01571 5.12021 5.16278 5.19805 5.24748 5.31711 5.44266 5.51276 5.68410 5.86123 6.20667 6.29637 6.32792 6.50220 6.60979 6.96127 7.48631 8.99656 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.009952 C = 0.009328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.106181 B = 2812.820105 C = 3000.906672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 H 0.062 0.938 4 C 0.041 3.959 5 C -0.499 4.499 6 H 0.057 0.943 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.495 5.495 14 C -0.001 4.001 15 C 0.092 3.908 16 H 0.095 0.905 17 N -0.837 5.837 18 C -0.104 4.104 19 C 0.044 3.956 20 H 0.058 0.942 21 C -0.129 4.129 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.056 0.944 25 H -0.010 1.010 26 H -0.013 1.013 27 H 0.258 0.742 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.341 0.659 31 H 0.342 0.658 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.007 2.134 13.054 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.025 4.025 3 H 0.080 0.920 4 C 0.004 3.996 5 C -0.537 4.537 6 H 0.075 0.925 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.219 5.219 14 C -0.131 4.131 15 C -0.021 4.021 16 H 0.113 0.887 17 N -0.365 5.365 18 C -0.142 4.142 19 C -0.064 4.064 20 H 0.076 0.924 21 C -0.186 4.186 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.008 0.992 26 H 0.006 0.994 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.563 2.046 13.627 14.515 hybrid contribution 0.131 -0.036 -1.920 1.925 sum -4.432 2.010 11.706 12.678 Atomic orbital electron populations 1.22412 0.97358 1.01576 1.02119 1.21701 0.92060 0.97413 0.91360 0.91982 1.18955 0.95300 0.93890 0.91437 1.21427 0.93145 1.32482 1.06683 0.92490 1.25860 1.02927 0.95605 0.95676 1.70093 1.37185 1.37948 1.13030 0.85621 0.80507 0.78362 0.77227 1.19577 1.21370 1.19555 1.65476 1.53322 1.02093 1.01001 1.23964 0.97671 0.92955 0.98550 1.22220 0.94131 0.94412 0.91294 0.88675 1.59141 1.04797 1.07378 1.65183 1.22398 1.03315 0.91931 0.96591 1.22857 0.97890 0.95231 0.90387 0.92436 1.21650 0.98919 0.96876 1.01204 0.93035 0.91056 0.92451 0.99206 0.99424 0.93294 0.93391 0.93215 0.84665 0.84613 0.89201 0.90607 0.93229 0.94036 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.91 8.26 71.98 0.59 -5.32 16 2 C 0.08 3.42 2.25 44.92 0.10 3.52 16 3 H 0.06 2.62 7.32 -2.39 -0.02 2.60 16 4 C 0.04 2.19 4.44 29.85 0.13 2.32 16 5 C -0.50 -28.56 8.84 25.60 0.23 -28.34 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -58.21 13.29 21.45 0.28 -57.93 16 9 Si 0.96 45.75 29.54 68.60 2.03 47.77 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.49 -18.16 4.76 -831.73 -3.96 -22.12 16 14 C 0.00 -0.04 5.18 86.45 0.45 0.40 16 15 C 0.09 2.47 4.19 45.81 0.19 2.66 16 16 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 17 N -0.84 -22.80 9.16 -164.97 -1.51 -24.31 16 18 C -0.10 -2.54 6.29 31.49 0.20 -2.35 16 19 C 0.04 1.26 2.75 45.06 0.12 1.39 16 20 H 0.06 1.54 5.84 -2.38 -0.01 1.52 16 21 C -0.13 -3.49 9.32 71.98 0.67 -2.82 16 22 H 0.05 1.76 6.35 -2.39 -0.02 1.74 16 23 H 0.07 2.00 5.99 -2.39 -0.01 1.99 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H -0.01 -0.60 7.03 -2.39 -0.02 -0.61 16 26 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 27 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 28 H 0.05 1.94 7.55 -2.39 -0.02 1.92 16 29 H 0.05 1.63 5.43 -2.39 -0.01 1.61 16 30 H 0.34 8.77 9.08 -89.70 -0.81 7.95 16 31 H 0.34 10.35 8.99 -89.69 -0.81 9.54 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.92 7.66 -2.39 -0.02 1.90 16 34 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.04 1.21 7.41 -2.39 -0.02 1.19 16 36 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -63.67 278.59 -0.56 -64.23 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.55 Total: 20.70 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 3.15 Total: -28.34 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -5.19 Total: -104.36 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -63.67 -0.56 -64.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702641219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.859 kcal (2) G-P(sol) polarization free energy of solvation -63.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds