Wall clock time and date at job start Mon Mar 30 2020 02:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47308 * 2 1 4 4 C 1.53005 * 109.46892 * 240.00337 * 2 1 3 5 5 C 1.50702 * 109.47081 * 65.61477 * 4 2 1 6 6 H 1.08007 * 119.99825 * 5.07632 * 5 4 2 7 7 C 1.37877 * 120.00171 * 185.34591 * 5 4 2 8 8 N 1.31516 * 119.99739 * 359.72652 * 7 5 4 9 9 Si 1.86803 * 120.00165 * 179.72659 * 7 5 4 10 10 H 1.48494 * 109.46878 * 59.99930 * 9 7 5 11 11 H 1.48496 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46922 * 300.00206 * 9 7 5 13 13 N 1.46892 * 109.47527 * 120.00397 * 2 1 3 14 14 C 1.47447 * 110.99991 * 184.31108 * 13 2 1 15 15 C 1.54322 * 107.23435 * 123.25811 * 14 13 2 16 16 H 1.09000 * 110.70503 * 263.90205 * 15 14 13 17 17 N 1.46901 * 110.70802 * 140.84232 * 15 14 13 18 18 C 1.55140 * 103.01843 * 22.28237 * 15 14 13 19 19 C 1.47845 * 111.00321 * 305.15046 * 13 2 1 20 20 H 1.09007 * 110.36908 * 332.47179 * 19 13 2 21 21 C 1.52998 * 110.37160 * 94.80380 * 19 13 2 22 22 H 1.09009 * 109.46723 * 299.99151 * 1 2 3 23 23 H 1.08997 * 109.47715 * 59.99803 * 1 2 3 24 24 H 1.08999 * 109.47163 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47137 * 305.61957 * 4 2 1 26 26 H 1.08998 * 109.47420 * 185.61373 * 4 2 1 27 27 H 0.96996 * 120.00062 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.88933 * 242.65972 * 14 13 2 29 29 H 1.08995 * 109.89029 * 3.85078 * 14 13 2 30 30 H 1.00892 * 111.00040 * 61.45052 * 17 15 14 31 31 H 1.00897 * 110.99943 * 185.40990 * 17 15 14 32 32 H 1.08998 * 110.99300 * 82.44222 * 18 15 14 33 33 H 1.08997 * 110.99088 * 206.21796 * 18 15 14 34 34 H 1.09007 * 109.47311 * 60.00624 * 21 19 13 35 35 H 1.09003 * 109.47459 * 180.02562 * 21 19 13 36 36 H 1.08997 * 109.47615 * 300.00569 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6543 0.0650 -2.4758 6 1 1.1735 1.0266 -2.3718 7 6 1.9101 -0.4456 -3.7307 8 7 2.4957 -1.6164 -3.8574 9 14 1.4252 0.5255 -5.2510 10 1 2.1262 1.8346 -5.2466 11 1 1.8060 -0.2364 -6.4674 12 1 -0.0427 0.7501 -5.2475 13 7 2.0197 -0.6925 1.1993 14 6 3.4900 -0.6232 1.2861 15 6 3.8378 0.0244 2.6430 16 1 4.0125 1.0939 2.5261 17 7 5.0079 -0.6283 3.2454 18 6 2.5641 -0.2339 3.4903 19 6 1.4472 -0.0975 2.4257 20 1 1.2060 0.9527 2.2610 21 6 0.2000 -0.8698 2.8602 22 1 -0.3633 0.5138 0.8902 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.5967 -1.7157 -1.3011 26 1 3.1253 -0.8091 -1.2006 27 1 2.6753 -1.9759 -4.7402 28 1 3.9122 -1.6268 1.2352 29 1 3.8811 -0.0123 0.4726 30 1 5.8208 -0.5288 2.6560 31 1 5.1861 -0.2685 4.1710 32 1 2.5760 -1.2366 3.9175 33 1 2.4548 0.5194 4.2705 34 1 0.4665 -1.9077 3.0601 35 1 -0.2099 -0.4192 3.7641 36 1 -0.5455 -0.8327 2.0659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702641220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:24 Heat of formation + Delta-G solvation = -6.394466 kcal Electronic energy + Delta-G solvation = -14840.649748 eV Core-core repulsion = 12552.059538 eV Total energy + Delta-G solvation = -2288.590210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19370 -35.00470 -33.15072 -31.74276 -30.24392 -27.73596 -26.48511 -25.00078 -23.32553 -20.38061 -20.08123 -18.96045 -16.49539 -16.01048 -15.18539 -15.05202 -14.51277 -13.94070 -13.73950 -13.34619 -12.67597 -12.31673 -11.94898 -11.84714 -11.68629 -11.23979 -11.04526 -10.83393 -10.79917 -10.77188 -10.53210 -10.42696 -10.17444 -9.80062 -9.14154 -9.06782 -8.71428 -8.30620 -7.60197 -5.95981 -3.97962 3.34251 3.39011 3.40942 4.36128 4.49364 4.64250 4.81248 5.06553 5.32151 5.39305 5.52654 5.70506 5.80437 5.92063 5.98521 5.99551 6.15916 6.19356 6.23881 6.35610 6.41613 6.48747 6.57745 6.78746 6.99819 7.16059 7.22939 7.44026 7.63244 7.65034 7.85074 7.92434 8.15087 8.48227 9.08723 9.64847 11.15258 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040216 B = 0.007814 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.068670 B = 3582.574522 C = 4013.573914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.081 3.919 3 H 0.024 0.976 4 C 0.035 3.965 5 C -0.518 4.518 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.517 5.517 14 C 0.055 3.945 15 C 0.064 3.936 16 H 0.036 0.964 17 N -0.838 5.838 18 C -0.116 4.116 19 C 0.069 3.931 20 H 0.047 0.953 21 C -0.140 4.140 22 H 0.035 0.965 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.028 0.972 26 H 0.013 0.987 27 H 0.260 0.740 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.342 0.658 31 H 0.336 0.664 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 3.761 13.257 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.026 4.026 3 H 0.042 0.958 4 C -0.003 4.003 5 C -0.557 4.557 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.242 5.242 14 C -0.074 4.074 15 C -0.049 4.049 16 H 0.054 0.946 17 N -0.367 5.367 18 C -0.155 4.155 19 C -0.040 4.040 20 H 0.065 0.935 21 C -0.198 4.198 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.127 2.443 12.993 13.221 hybrid contribution 0.513 2.366 -0.911 2.587 sum 0.387 4.810 12.082 13.010 Atomic orbital electron populations 1.21902 0.95489 1.01552 1.00109 1.22019 0.94995 0.94881 0.90744 0.95800 1.19123 0.95960 0.96176 0.89014 1.21170 1.39297 1.04288 0.90976 0.92877 1.24986 0.95360 0.94968 0.98968 1.69966 1.42370 1.17521 1.23314 0.86699 0.78964 0.80004 0.82562 1.20397 1.21299 1.20264 1.63648 1.04776 1.54104 1.01694 1.22775 0.89200 1.01351 0.94066 1.22667 0.91110 0.95047 0.96042 0.94586 1.58689 1.07454 1.63967 1.06633 1.22791 0.93397 1.02372 0.96925 1.22447 0.94806 0.96553 0.90220 0.93514 1.21909 0.97106 1.00388 1.00366 0.94560 0.91750 0.92558 0.95393 0.96923 0.92994 0.89974 0.92407 0.84575 0.85169 0.89850 0.92069 0.92243 0.93481 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 7.62 37.16 0.28 -2.33 16 2 C 0.08 1.74 1.64 -67.72 -0.11 1.63 16 3 H 0.02 0.53 8.11 -51.93 -0.42 0.11 16 4 C 0.03 0.91 4.46 -27.88 -0.12 0.79 16 5 C -0.52 -14.66 8.31 -34.44 -0.29 -14.95 16 6 H 0.05 1.46 7.30 -52.48 -0.38 1.07 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.52 -9.79 4.70 -215.48 -1.01 -10.80 16 14 C 0.05 0.98 5.83 -2.83 -0.02 0.96 16 15 C 0.06 0.90 4.07 -65.89 -0.27 0.63 16 16 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 17 N -0.84 -10.05 9.28 -3.12 -0.03 -10.08 16 18 C -0.12 -1.57 6.18 -24.60 -0.15 -1.72 16 19 C 0.07 1.07 2.39 -66.19 -0.16 0.91 16 20 H 0.05 0.74 7.37 -51.92 -0.38 0.36 16 21 C -0.14 -1.97 9.13 37.16 0.34 -1.63 16 22 H 0.04 0.61 5.60 -51.92 -0.29 0.31 16 23 H 0.06 1.33 7.10 -51.93 -0.37 0.96 16 24 H 0.06 1.12 7.77 -51.93 -0.40 0.72 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.01 0.35 6.64 -51.93 -0.35 0.01 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 29 H 0.06 1.13 6.66 -51.93 -0.35 0.78 16 30 H 0.34 3.75 9.07 -39.30 -0.36 3.39 16 31 H 0.34 3.26 9.07 -39.29 -0.36 2.91 16 32 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.00 5.23 -51.93 -0.27 0.73 16 LS Contribution 278.22 15.07 4.19 4.19 Total: -1.00 -30.09 278.22 -7.73 -37.83 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -6.01 Total: 2.57 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.59 Total: -14.12 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.31 Total: -47.21 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.09 -7.73 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702641220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.432 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds