Wall clock time and date at job start Mon Mar 30 2020 02:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47308 * 2 1 4 4 C 1.53005 * 109.46892 * 240.00337 * 2 1 3 5 5 C 1.50702 * 109.47081 * 65.61477 * 4 2 1 6 6 H 1.08007 * 119.99825 * 5.07632 * 5 4 2 7 7 C 1.37877 * 120.00171 * 185.34591 * 5 4 2 8 8 N 1.31516 * 119.99739 * 359.72652 * 7 5 4 9 9 Si 1.86803 * 120.00165 * 179.72659 * 7 5 4 10 10 H 1.48494 * 109.46878 * 59.99930 * 9 7 5 11 11 H 1.48496 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46922 * 300.00206 * 9 7 5 13 13 N 1.46892 * 109.47527 * 120.00397 * 2 1 3 14 14 C 1.47447 * 110.99991 * 184.31108 * 13 2 1 15 15 C 1.54322 * 107.23435 * 123.25811 * 14 13 2 16 16 H 1.09000 * 110.70503 * 263.90205 * 15 14 13 17 17 N 1.46901 * 110.70802 * 140.84232 * 15 14 13 18 18 C 1.55140 * 103.01843 * 22.28237 * 15 14 13 19 19 C 1.47845 * 111.00321 * 305.15046 * 13 2 1 20 20 H 1.09007 * 110.36908 * 332.47179 * 19 13 2 21 21 C 1.52998 * 110.37160 * 94.80380 * 19 13 2 22 22 H 1.09009 * 109.46723 * 299.99151 * 1 2 3 23 23 H 1.08997 * 109.47715 * 59.99803 * 1 2 3 24 24 H 1.08999 * 109.47163 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47137 * 305.61957 * 4 2 1 26 26 H 1.08998 * 109.47420 * 185.61373 * 4 2 1 27 27 H 0.96996 * 120.00062 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.88933 * 242.65972 * 14 13 2 29 29 H 1.08995 * 109.89029 * 3.85078 * 14 13 2 30 30 H 1.00892 * 111.00040 * 61.45052 * 17 15 14 31 31 H 1.00897 * 110.99943 * 185.40990 * 17 15 14 32 32 H 1.08998 * 110.99300 * 82.44222 * 18 15 14 33 33 H 1.08997 * 110.99088 * 206.21796 * 18 15 14 34 34 H 1.09007 * 109.47311 * 60.00624 * 21 19 13 35 35 H 1.09003 * 109.47459 * 180.02562 * 21 19 13 36 36 H 1.08997 * 109.47615 * 300.00569 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6543 0.0650 -2.4758 6 1 1.1735 1.0266 -2.3718 7 6 1.9101 -0.4456 -3.7307 8 7 2.4957 -1.6164 -3.8574 9 14 1.4252 0.5255 -5.2510 10 1 2.1262 1.8346 -5.2466 11 1 1.8060 -0.2364 -6.4674 12 1 -0.0427 0.7501 -5.2475 13 7 2.0197 -0.6925 1.1993 14 6 3.4900 -0.6232 1.2861 15 6 3.8378 0.0244 2.6430 16 1 4.0125 1.0939 2.5261 17 7 5.0079 -0.6283 3.2454 18 6 2.5641 -0.2339 3.4903 19 6 1.4472 -0.0975 2.4257 20 1 1.2060 0.9527 2.2610 21 6 0.2000 -0.8698 2.8602 22 1 -0.3633 0.5138 0.8902 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.5967 -1.7157 -1.3011 26 1 3.1253 -0.8091 -1.2006 27 1 2.6753 -1.9759 -4.7402 28 1 3.9122 -1.6268 1.2352 29 1 3.8811 -0.0123 0.4726 30 1 5.8208 -0.5288 2.6560 31 1 5.1861 -0.2685 4.1710 32 1 2.5760 -1.2366 3.9175 33 1 2.4548 0.5194 4.2705 34 1 0.4665 -1.9077 3.0601 35 1 -0.2099 -0.4192 3.7641 36 1 -0.5455 -0.8327 2.0659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702641220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:23 Heat of formation + Delta-G solvation = -28.705185 kcal Electronic energy + Delta-G solvation = -14841.617214 eV Core-core repulsion = 12552.059538 eV Total energy + Delta-G solvation = -2289.557676 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57695 -36.56042 -34.86885 -33.40231 -31.63127 -29.42463 -28.00702 -26.32083 -25.36330 -21.82301 -21.35460 -20.54912 -18.59648 -17.31460 -16.58800 -16.50563 -16.21846 -15.40749 -15.11323 -14.75405 -14.35647 -13.93223 -13.57269 -13.37350 -13.12194 -12.91376 -12.65828 -12.62884 -12.41887 -12.20436 -11.99114 -11.86154 -11.63851 -11.54377 -11.22476 -10.95515 -10.53559 -9.71908 -9.10537 -8.18397 -6.29152 1.38922 1.42139 1.49981 2.40135 3.06093 3.14495 3.53226 3.61103 3.85649 4.16063 4.27195 4.31952 4.44751 4.54614 4.58283 4.66978 4.80362 4.88841 4.95482 5.02256 5.10162 5.11780 5.21345 5.28059 5.40078 5.48421 5.55427 5.72428 5.79250 6.12263 6.21557 6.32360 6.42350 6.61193 6.87157 7.39128 8.93646 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040216 B = 0.007814 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.068670 B = 3582.574522 C = 4013.573914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.093 3.907 3 H 0.018 0.982 4 C 0.045 3.955 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.964 3.036 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.265 1.265 13 N -0.532 5.532 14 C 0.053 3.947 15 C 0.074 3.926 16 H 0.043 0.957 17 N -0.840 5.840 18 C -0.105 4.105 19 C 0.063 3.937 20 H 0.051 0.949 21 C -0.136 4.136 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.047 0.953 25 H -0.010 1.010 26 H -0.016 1.016 27 H 0.263 0.737 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.347 0.653 31 H 0.354 0.646 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 5.323 14.627 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.015 4.015 3 H 0.036 0.964 4 C 0.008 3.992 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.788 3.212 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.190 1.190 13 N -0.258 5.258 14 C -0.076 4.076 15 C -0.038 4.038 16 H 0.061 0.939 17 N -0.372 5.372 18 C -0.143 4.143 19 C -0.045 4.045 20 H 0.069 0.931 21 C -0.194 4.194 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.009 0.991 26 H 0.002 0.998 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.160 0.840 31 H 0.168 0.832 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.882 4.016 14.396 14.972 hybrid contribution 0.797 1.826 -1.300 2.379 sum -0.085 5.842 13.096 14.340 Atomic orbital electron populations 1.21805 0.93845 1.01301 1.01121 1.21699 0.96154 0.93729 0.89952 0.96400 1.18932 0.93919 0.94738 0.91626 1.21560 1.39191 1.04710 0.91931 0.92139 1.25958 0.95132 0.95984 1.02646 1.70119 1.43555 1.19385 1.24230 0.85527 0.79141 0.78564 0.77975 1.19270 1.20916 1.19008 1.63561 1.05459 1.54466 1.02280 1.22693 0.88774 1.00168 0.95920 1.22484 0.92474 0.94972 0.93908 0.93888 1.58607 1.07112 1.63887 1.07621 1.22748 0.91605 1.03276 0.96701 1.22636 0.96101 0.96728 0.89080 0.93087 1.21886 0.96069 1.00094 1.01351 0.91123 0.93053 0.93420 0.99114 0.99783 0.92868 0.91914 0.95018 0.83981 0.83197 0.90144 0.88873 0.92940 0.90326 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 7.62 71.98 0.55 -4.24 16 2 C 0.09 4.05 1.64 44.92 0.07 4.12 16 3 H 0.02 0.80 8.11 -2.38 -0.02 0.79 16 4 C 0.05 2.50 4.46 29.85 0.13 2.63 16 5 C -0.54 -30.97 8.31 25.60 0.21 -30.76 16 6 H 0.06 3.33 7.30 -2.91 -0.02 3.31 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.93 -58.23 13.29 21.45 0.28 -57.95 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.53 -20.27 4.70 -835.64 -3.93 -24.20 16 14 C 0.05 1.95 5.83 86.65 0.51 2.45 16 15 C 0.07 1.98 4.07 46.10 0.19 2.17 16 16 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 17 N -0.84 -18.71 9.28 -163.79 -1.52 -20.22 16 18 C -0.11 -2.52 6.18 31.98 0.20 -2.32 16 19 C 0.06 1.81 2.39 45.38 0.11 1.92 16 20 H 0.05 1.46 7.37 -2.38 -0.02 1.44 16 21 C -0.14 -3.49 9.13 71.98 0.66 -2.83 16 22 H 0.07 2.23 5.60 -2.38 -0.01 2.22 16 23 H 0.05 2.10 7.10 -2.39 -0.02 2.08 16 24 H 0.05 1.91 7.77 -2.39 -0.02 1.89 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H -0.02 -0.96 6.64 -2.39 -0.02 -0.98 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.06 2.49 8.03 -2.39 -0.02 2.47 16 29 H 0.03 1.30 6.66 -2.39 -0.02 1.28 16 30 H 0.35 7.23 9.07 -89.70 -0.81 6.42 16 31 H 0.35 5.89 9.07 -89.70 -0.81 5.08 16 32 H 0.08 2.02 8.05 -2.39 -0.02 2.00 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.41 8.13 -2.38 -0.02 1.39 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.58 5.23 -2.39 -0.01 1.56 16 Total: -1.00 -66.51 278.22 -0.62 -67.13 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.56 Total: 14.69 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 3.09 Total: -26.35 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -5.17 Total: -102.37 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.51 -0.62 -67.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702641220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.425 kcal (2) G-P(sol) polarization free energy of solvation -66.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds