Wall clock time and date at job start Mon Mar 30 2020 02:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47437 * 2 1 4 4 C 1.53005 * 109.47134 * 240.00063 * 2 1 3 5 5 C 1.50700 * 109.47045 * 175.00277 * 4 2 1 6 6 H 1.07993 * 119.99999 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99586 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00501 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99500 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46964 * 60.00656 * 9 7 5 11 11 H 1.48507 * 109.46829 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47295 * 300.00109 * 9 7 5 13 13 N 1.46900 * 109.47107 * 120.00206 * 2 1 3 14 14 C 1.48531 * 111.00371 * 49.12508 * 13 2 1 15 15 C 1.55105 * 103.28731 * 200.33438 * 14 13 2 16 16 H 1.09003 * 110.70864 * 278.99636 * 15 14 13 17 17 N 1.46898 * 110.80853 * 155.66146 * 15 14 13 18 18 C 1.54597 * 102.84219 * 37.30420 * 15 14 13 19 19 C 1.47901 * 110.99864 * 291.72808 * 13 2 1 20 20 H 1.09001 * 109.91624 * 26.49404 * 19 13 2 21 21 C 1.53001 * 110.08225 * 265.29124 * 19 13 2 22 22 H 1.08997 * 109.46954 * 52.46205 * 1 2 3 23 23 H 1.09004 * 109.47227 * 172.45854 * 1 2 3 24 24 H 1.09005 * 109.47145 * 292.45988 * 1 2 3 25 25 H 1.09004 * 109.46585 * 294.99744 * 4 2 1 26 26 H 1.08996 * 109.47338 * 54.99870 * 4 2 1 27 27 H 0.97001 * 120.00367 * 179.97438 * 8 7 5 28 28 H 1.08999 * 110.66676 * 318.72018 * 14 13 2 29 29 H 1.09000 * 110.66542 * 81.67465 * 14 13 2 30 30 H 1.00899 * 111.00315 * 66.54531 * 17 15 14 31 31 H 1.00902 * 110.99343 * 190.49710 * 17 15 14 32 32 H 1.08997 * 110.30718 * 219.18369 * 18 15 14 33 33 H 1.09006 * 110.30615 * 97.11762 * 18 15 14 34 34 H 1.08997 * 109.46963 * 300.85315 * 21 19 13 35 35 H 1.08992 * 109.47392 * 60.85626 * 21 19 13 36 36 H 1.09005 * 109.47020 * 180.85703 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5396 7 6 4.2303 -1.1936 -2.3578 8 7 3.5765 -1.8387 -3.2990 9 14 6.0920 -1.0612 -2.4368 10 1 6.6844 -1.6864 -1.2271 11 1 6.5870 -1.7614 -3.6493 12 1 6.4845 0.3697 -2.4972 13 7 2.0196 -0.6925 1.1994 14 6 1.3416 -2.0028 1.3718 15 6 1.5583 -2.3215 2.8742 16 1 2.5517 -2.7382 3.0403 17 7 0.5201 -3.2354 3.3688 18 6 1.4287 -0.9332 3.5421 19 6 1.7143 0.0832 2.4211 20 1 0.8372 0.7084 2.2544 21 6 2.9117 0.9563 2.8019 22 1 -0.3633 0.6261 -0.8149 23 1 -0.3634 -1.0188 -0.1349 24 1 -0.3634 0.3926 0.9498 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1370 27 1 4.0608 -2.2455 -4.0344 28 1 0.2783 -1.9181 1.1473 29 1 1.8067 -2.7622 0.7434 30 1 0.6009 -4.1430 2.9355 31 1 0.5540 -3.3106 4.3745 32 1 2.1607 -0.8290 4.3429 33 1 0.4202 -0.7935 3.9315 34 1 3.7827 0.3239 2.9729 35 1 3.1235 1.6554 1.9929 36 1 2.6818 1.5117 3.7112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702641221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:26 Heat of formation + Delta-G solvation = -2.762790 kcal Electronic energy + Delta-G solvation = -15032.643309 eV Core-core repulsion = 12744.210580 eV Total energy + Delta-G solvation = -2288.432729 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.20493 -34.92845 -32.99934 -31.93573 -29.42801 -27.50101 -27.21677 -25.00868 -23.12064 -20.92254 -19.74912 -18.59827 -16.15863 -15.96084 -15.23771 -15.00260 -14.38831 -13.93470 -13.63278 -13.35220 -12.62931 -12.39103 -12.06903 -11.72393 -11.65566 -11.45919 -11.06763 -10.85283 -10.65201 -10.57872 -10.43011 -10.32455 -10.27937 -9.84200 -9.12374 -8.96397 -8.60729 -8.22215 -7.48703 -5.84799 -3.82340 3.42750 3.46170 3.49986 4.39734 4.59330 4.90821 4.98198 5.04794 5.35594 5.52349 5.60690 5.80432 5.84916 5.88884 5.96473 6.02595 6.07238 6.14927 6.23993 6.34316 6.37075 6.52175 6.64194 6.68647 6.77030 7.06554 7.25273 7.47366 7.58257 7.70303 7.89314 8.07103 8.16922 8.63166 9.23305 9.78832 11.27233 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.009024 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.705707 B = 3102.115597 C = 3159.573277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 H 0.068 0.932 4 C 0.034 3.966 5 C -0.489 4.489 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.483 5.483 14 C 0.044 3.956 15 C 0.080 3.920 16 H 0.047 0.953 17 N -0.844 5.844 18 C -0.119 4.119 19 C 0.056 3.944 20 H 0.048 0.952 21 C -0.132 4.132 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.257 0.743 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.341 0.659 31 H 0.336 0.664 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 0.824 12.594 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.030 4.030 3 H 0.087 0.913 4 C -0.004 4.004 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.206 5.206 14 C -0.085 4.085 15 C -0.031 4.031 16 H 0.065 0.935 17 N -0.374 5.374 18 C -0.157 4.157 19 C -0.053 4.053 20 H 0.066 0.934 21 C -0.190 4.190 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.777 1.202 12.030 12.999 hybrid contribution 0.971 -0.464 0.266 1.108 sum -3.806 0.738 12.296 12.892 Atomic orbital electron populations 1.22529 0.99705 1.01660 1.00405 1.22038 0.90142 0.98420 0.92381 0.91343 1.19123 0.96256 0.95266 0.89711 1.21141 0.91854 1.32851 1.06876 0.92241 1.25004 0.97931 0.95956 0.96040 1.69954 1.35242 1.36979 1.12388 0.86704 0.86498 0.77972 0.77027 1.20435 1.21681 1.20529 1.64883 1.53413 1.01774 1.00568 1.23222 0.98148 0.93386 0.93697 1.22316 0.92418 0.92496 0.95909 0.93454 1.58747 1.52245 1.15753 1.10623 1.22497 1.01346 0.94205 0.97700 1.22361 0.96884 0.95006 0.91062 0.93370 1.21721 0.98174 0.99146 0.99918 0.92708 0.92480 0.93926 0.96483 0.96465 0.93322 0.92584 0.90137 0.84652 0.85168 0.91800 0.91276 0.92214 0.92520 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 8.18 37.16 0.30 -3.02 16 2 C 0.08 1.65 2.22 -67.71 -0.15 1.50 16 3 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 4 C 0.03 0.87 4.46 -27.88 -0.12 0.75 16 5 C -0.49 -13.93 8.84 -34.44 -0.30 -14.23 16 6 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 9 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.48 -9.43 4.60 -214.57 -0.99 -10.41 16 14 C 0.04 0.80 5.26 -1.81 -0.01 0.79 16 15 C 0.08 1.19 4.21 -65.76 -0.28 0.91 16 16 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 17 N -0.84 -10.31 9.30 -3.01 -0.03 -10.34 16 18 C -0.12 -1.66 6.26 -25.37 -0.16 -1.82 16 19 C 0.06 0.90 2.82 -66.64 -0.19 0.72 16 20 H 0.05 0.77 6.01 -51.93 -0.31 0.46 16 21 C -0.13 -1.99 9.33 37.16 0.35 -1.64 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.06 1.04 6.40 -51.93 -0.33 0.71 16 24 H 0.04 0.69 6.27 -51.93 -0.33 0.37 16 25 H 0.02 0.47 7.09 -51.93 -0.37 0.10 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.06 1.02 5.46 -51.93 -0.28 0.74 16 29 H 0.08 1.64 7.64 -51.93 -0.40 1.25 16 30 H 0.34 3.82 9.08 -39.29 -0.36 3.46 16 31 H 0.34 3.37 9.03 -39.29 -0.35 3.01 16 32 H 0.06 0.81 7.69 -51.93 -0.40 0.41 16 33 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 280.78 15.07 4.23 4.23 Total: -1.00 -30.35 280.78 -7.77 -38.13 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.04 Total: 2.64 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.66 Total: -14.69 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.28 Total: -47.65 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.35 -7.77 -38.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702641221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.363 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds