Wall clock time and date at job start Mon Mar 30 2020 02:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47437 * 2 1 4 4 C 1.53005 * 109.47134 * 240.00063 * 2 1 3 5 5 C 1.50700 * 109.47045 * 175.00277 * 4 2 1 6 6 H 1.07993 * 119.99999 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99586 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00501 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99500 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46964 * 60.00656 * 9 7 5 11 11 H 1.48507 * 109.46829 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47295 * 300.00109 * 9 7 5 13 13 N 1.46900 * 109.47107 * 120.00206 * 2 1 3 14 14 C 1.48531 * 111.00371 * 49.12508 * 13 2 1 15 15 C 1.55105 * 103.28731 * 200.33438 * 14 13 2 16 16 H 1.09003 * 110.70864 * 278.99636 * 15 14 13 17 17 N 1.46898 * 110.80853 * 155.66146 * 15 14 13 18 18 C 1.54597 * 102.84219 * 37.30420 * 15 14 13 19 19 C 1.47901 * 110.99864 * 291.72808 * 13 2 1 20 20 H 1.09001 * 109.91624 * 26.49404 * 19 13 2 21 21 C 1.53001 * 110.08225 * 265.29124 * 19 13 2 22 22 H 1.08997 * 109.46954 * 52.46205 * 1 2 3 23 23 H 1.09004 * 109.47227 * 172.45854 * 1 2 3 24 24 H 1.09005 * 109.47145 * 292.45988 * 1 2 3 25 25 H 1.09004 * 109.46585 * 294.99744 * 4 2 1 26 26 H 1.08996 * 109.47338 * 54.99870 * 4 2 1 27 27 H 0.97001 * 120.00367 * 179.97438 * 8 7 5 28 28 H 1.08999 * 110.66676 * 318.72018 * 14 13 2 29 29 H 1.09000 * 110.66542 * 81.67465 * 14 13 2 30 30 H 1.00899 * 111.00315 * 66.54531 * 17 15 14 31 31 H 1.00902 * 110.99343 * 190.49710 * 17 15 14 32 32 H 1.08997 * 110.30718 * 219.18369 * 18 15 14 33 33 H 1.09006 * 110.30615 * 97.11762 * 18 15 14 34 34 H 1.08997 * 109.46963 * 300.85315 * 21 19 13 35 35 H 1.08992 * 109.47392 * 60.85626 * 21 19 13 36 36 H 1.09005 * 109.47020 * 180.85703 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5396 7 6 4.2303 -1.1936 -2.3578 8 7 3.5765 -1.8387 -3.2990 9 14 6.0920 -1.0612 -2.4368 10 1 6.6844 -1.6864 -1.2271 11 1 6.5870 -1.7614 -3.6493 12 1 6.4845 0.3697 -2.4972 13 7 2.0196 -0.6925 1.1994 14 6 1.3416 -2.0028 1.3718 15 6 1.5583 -2.3215 2.8742 16 1 2.5517 -2.7382 3.0403 17 7 0.5201 -3.2354 3.3688 18 6 1.4287 -0.9332 3.5421 19 6 1.7143 0.0832 2.4211 20 1 0.8372 0.7084 2.2544 21 6 2.9117 0.9563 2.8019 22 1 -0.3633 0.6261 -0.8149 23 1 -0.3634 -1.0188 -0.1349 24 1 -0.3634 0.3926 0.9498 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1370 27 1 4.0608 -2.2455 -4.0344 28 1 0.2783 -1.9181 1.1473 29 1 1.8067 -2.7622 0.7434 30 1 0.6009 -4.1430 2.9355 31 1 0.5540 -3.3106 4.3745 32 1 2.1607 -0.8290 4.3429 33 1 0.4202 -0.7935 3.9315 34 1 3.7827 0.3239 2.9729 35 1 3.1235 1.6554 1.9929 36 1 2.6818 1.5117 3.7112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702641221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:26 Heat of formation + Delta-G solvation = -24.934430 kcal Electronic energy + Delta-G solvation = -15033.604744 eV Core-core repulsion = 12744.210580 eV Total energy + Delta-G solvation = -2289.394164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60624 -36.44819 -34.72344 -33.59449 -30.87109 -29.31735 -28.59693 -26.33579 -25.15522 -22.40974 -21.03268 -20.15413 -18.35684 -17.30076 -16.61144 -16.47169 -16.06669 -15.30414 -15.10338 -14.72406 -14.31568 -13.97972 -13.64722 -13.52277 -13.08779 -12.88970 -12.78501 -12.51814 -12.39682 -12.20531 -11.95408 -11.80583 -11.59195 -11.45680 -11.12892 -11.02789 -10.48582 -9.64699 -8.98406 -8.10172 -6.15322 1.40345 1.43481 1.50962 2.46698 3.08355 3.25263 3.70793 3.74005 3.84995 4.18223 4.21306 4.36074 4.42145 4.54544 4.61637 4.68405 4.83722 4.89350 4.97887 5.00479 5.07113 5.14010 5.20072 5.23817 5.30010 5.47028 5.52049 5.70434 5.88335 6.17679 6.30332 6.38655 6.51501 6.65757 6.98064 7.50237 9.01821 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.009024 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.705707 B = 3102.115597 C = 3159.573277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.087 3.913 3 H 0.063 0.937 4 C 0.041 3.959 5 C -0.500 4.500 6 H 0.057 0.943 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.957 3.043 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.506 5.506 14 C 0.044 3.956 15 C 0.090 3.910 16 H 0.040 0.960 17 N -0.841 5.841 18 C -0.109 4.109 19 C 0.053 3.947 20 H 0.054 0.946 21 C -0.128 4.128 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.066 0.934 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.259 0.741 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.347 0.653 31 H 0.353 0.647 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 1.435 14.755 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 H 0.081 0.919 4 C 0.004 3.996 5 C -0.538 4.538 6 H 0.075 0.925 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.231 5.231 14 C -0.084 4.084 15 C -0.022 4.022 16 H 0.058 0.942 17 N -0.373 5.373 18 C -0.147 4.147 19 C -0.056 4.056 20 H 0.072 0.928 21 C -0.186 4.186 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.620 1.817 14.220 15.062 hybrid contribution 0.891 -0.671 -0.412 1.189 sum -3.729 1.146 13.808 14.348 Atomic orbital electron populations 1.22384 0.97280 1.01576 1.01922 1.21710 0.92033 0.97234 0.91174 0.91908 1.18958 0.95282 0.93968 0.91399 1.21449 0.93206 1.32467 1.06690 0.92457 1.25878 1.03007 0.95626 0.95709 1.70091 1.37192 1.37940 1.13053 0.85617 0.80450 0.78426 0.77189 1.19757 1.21213 1.19417 1.64743 1.54262 1.02684 1.01365 1.23132 0.97401 0.92101 0.95783 1.22112 0.92726 0.93841 0.93521 0.94230 1.58669 1.50898 1.15809 1.11921 1.22450 1.02784 0.92324 0.97118 1.22489 0.97534 0.95444 0.90131 0.92827 1.21713 0.97395 0.98701 1.00782 0.92255 0.93122 0.91487 0.99164 0.99161 0.93270 0.92664 0.93731 0.84028 0.83260 0.89830 0.89862 0.93146 0.94195 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.13 8.18 71.98 0.59 -5.54 16 2 C 0.09 3.71 2.22 44.92 0.10 3.81 16 3 H 0.06 2.71 8.10 -2.39 -0.02 2.69 16 4 C 0.04 2.22 4.46 29.85 0.13 2.36 16 5 C -0.50 -29.15 8.84 25.60 0.23 -28.92 16 6 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 8 N -0.94 -58.92 13.29 21.45 0.28 -58.63 16 9 Si 0.96 46.28 29.54 68.60 2.03 48.30 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.51 -19.65 4.60 -832.75 -3.83 -23.48 16 14 C 0.04 1.61 5.26 86.71 0.46 2.07 16 15 C 0.09 2.51 4.21 46.18 0.19 2.71 16 16 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 17 N -0.84 -18.62 9.30 -163.45 -1.52 -20.14 16 18 C -0.11 -2.67 6.26 31.47 0.20 -2.47 16 19 C 0.05 1.58 2.82 45.06 0.13 1.71 16 20 H 0.05 1.57 6.01 -2.39 -0.01 1.55 16 21 C -0.13 -3.58 9.33 71.98 0.67 -2.91 16 22 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.05 1.85 6.40 -2.38 -0.02 1.83 16 24 H 0.07 2.04 6.27 -2.38 -0.01 2.03 16 25 H -0.01 -0.59 7.09 -2.39 -0.02 -0.60 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.06 2.00 5.46 -2.39 -0.01 1.99 16 29 H 0.04 1.90 7.64 -2.39 -0.02 1.88 16 30 H 0.35 7.21 9.08 -89.69 -0.81 6.39 16 31 H 0.35 5.96 9.03 -89.69 -0.81 5.15 16 32 H 0.08 1.77 7.69 -2.39 -0.02 1.75 16 33 H 0.08 1.86 8.05 -2.38 -0.02 1.84 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -66.08 280.78 -0.44 -66.53 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -0.56 Total: 14.54 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 3.16 Total: -27.11 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -5.06 Total: -102.26 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -66.08 -0.44 -66.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702641221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.593 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds