Wall clock time and date at job start Mon Mar 30 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.90899 * 2 1 4 4 C 1.53988 * 109.92066 * 121.10127 * 2 1 3 5 5 C 1.54597 * 105.13968 * 120.57804 * 4 2 1 6 6 H 1.09005 * 110.72438 * 263.60114 * 5 4 2 7 7 N 1.46897 * 110.72556 * 140.32101 * 5 4 2 8 8 C 1.54933 * 102.92246 * 21.96028 * 5 4 2 9 9 N 1.47908 * 109.91932 * 238.89955 * 2 1 3 10 10 C 1.46898 * 110.99950 * 94.79818 * 9 2 1 11 11 C 1.53002 * 109.46654 * 170.00082 * 10 9 2 12 12 C 1.53003 * 109.46926 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47116 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00397 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00099 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99748 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00129 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47225 * 90.00027 * 17 15 13 19 19 H 1.48506 * 109.47225 * 210.00103 * 17 15 13 20 20 H 1.48497 * 109.47155 * 330.00005 * 17 15 13 21 21 H 1.09002 * 109.47153 * 300.69962 * 1 2 3 22 22 H 1.09001 * 109.46832 * 180.70153 * 1 2 3 23 23 H 1.09004 * 109.47261 * 60.70135 * 1 2 3 24 24 H 1.08996 * 110.31473 * 239.49721 * 4 2 1 25 25 H 1.09002 * 110.30761 * 1.56539 * 4 2 1 26 26 H 1.00902 * 111.00050 * 180.02562 * 7 5 4 27 27 H 1.00905 * 110.99871 * 303.95167 * 7 5 4 28 28 H 1.09001 * 110.67011 * 81.02251 * 8 5 4 29 29 H 1.09007 * 110.66674 * 204.15149 * 8 5 4 30 30 H 1.09001 * 109.47485 * 289.99966 * 10 9 2 31 31 H 1.08994 * 109.47368 * 50.00658 * 10 9 2 32 32 H 1.08993 * 109.47684 * 300.00183 * 11 10 9 33 33 H 1.09003 * 109.47049 * 60.00738 * 11 10 9 34 34 H 1.09001 * 109.47226 * 299.99892 * 12 11 10 35 35 H 1.08999 * 109.47072 * 60.00025 * 12 11 10 36 36 H 0.97004 * 119.99903 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0546 -0.7478 1.2396 5 6 2.9059 -1.9104 0.6795 6 1 2.3215 -2.8294 0.6339 7 7 4.1179 -2.1032 1.4869 8 6 3.2682 -1.4198 -0.7447 9 7 2.0339 -0.7183 -1.1907 10 6 2.3211 0.2164 -2.2869 11 6 3.0673 -0.5191 -3.4019 12 6 3.3670 0.4545 -4.5434 13 6 4.1014 -0.2701 -5.6419 14 1 4.3318 -1.3199 -5.5363 15 6 4.4802 0.4075 -6.7814 16 7 4.2011 1.6863 -6.9094 17 14 5.3911 -0.4905 -8.1427 18 1 4.4113 -1.0563 -9.1044 19 1 6.2865 0.4601 -8.8499 20 1 6.1999 -1.5891 -7.5560 21 1 -0.3633 0.5247 0.8837 22 1 -0.3633 -1.0276 0.0126 23 1 -0.3634 0.5029 -0.8962 24 1 2.6714 -0.0862 1.8478 25 1 1.2228 -1.1353 1.8279 26 1 4.6770 -2.8610 1.1246 27 1 4.6558 -1.2511 1.5408 28 1 4.1098 -0.7279 -0.7109 29 1 3.4889 -2.2641 -1.3979 30 1 1.3855 0.6161 -2.6782 31 1 2.9382 1.0342 -1.9149 32 1 4.0028 -0.9189 -3.0108 33 1 2.4501 -1.3369 -3.7741 34 1 2.4317 0.8546 -4.9348 35 1 3.9843 1.2720 -4.1710 36 1 4.4672 2.1629 -7.7113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702645138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:24 Heat of formation + Delta-G solvation = -17.586595 kcal Electronic energy + Delta-G solvation = -14308.395229 eV Core-core repulsion = 12019.319691 eV Total energy + Delta-G solvation = -2289.075538 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.33718 -34.93180 -33.56617 -32.27059 -30.23771 -28.43105 -26.16226 -25.20662 -22.59630 -21.10813 -19.92987 -19.54062 -16.53810 -16.39677 -15.62291 -14.84855 -14.45990 -14.14093 -14.05687 -13.49804 -13.00271 -12.64968 -12.26222 -12.20069 -12.00422 -11.52420 -11.31201 -11.12146 -10.91475 -10.81558 -10.58305 -10.51130 -10.38966 -9.68933 -9.34064 -9.06139 -8.83502 -8.34912 -8.16771 -6.00138 -4.02424 3.31695 3.37657 3.41052 4.05283 4.44553 4.51936 4.71714 4.79973 5.06196 5.23976 5.35604 5.38787 5.54518 5.65848 5.70672 5.77857 5.90125 5.92733 5.95244 6.07444 6.17597 6.27290 6.37449 6.66521 6.78279 6.92767 7.07249 7.24519 7.28535 7.39074 7.67285 7.82104 7.99946 8.43163 9.04611 9.61576 11.11336 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045112 B = 0.005881 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.529846 B = 4759.708738 C = 5187.483075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.049 0.951 4 C -0.118 4.118 5 C 0.085 3.915 6 H 0.093 0.907 7 N -0.841 5.841 8 C 0.005 3.995 9 N -0.510 5.510 10 C 0.048 3.952 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.052 0.948 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.342 0.658 27 H 0.339 0.661 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.447 -4.359 14.978 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 H 0.067 0.933 4 C -0.157 4.157 5 C -0.027 4.027 6 H 0.111 0.889 7 N -0.369 5.369 8 C -0.126 4.126 9 N -0.235 5.235 10 C -0.079 4.079 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.321 -4.731 15.268 16.558 hybrid contribution 1.662 0.554 -1.571 2.353 sum -2.660 -4.177 13.697 14.565 Atomic orbital electron populations 1.21732 0.94094 1.02132 1.01109 1.22436 0.96434 0.96297 0.90080 0.93257 1.22491 0.99560 0.96763 0.96858 1.22414 0.91754 0.98883 0.89661 0.88893 1.58957 1.10305 1.11289 1.56389 1.24082 0.92487 0.98967 0.97016 1.64798 1.25958 1.26916 1.05815 1.22470 0.99987 0.93510 0.91946 1.21691 0.97881 0.99585 0.95339 1.19071 0.96693 0.94047 0.91751 1.21242 1.36395 0.96134 1.01966 0.92747 1.25031 0.96162 0.94864 0.98443 1.69970 1.47316 1.08310 1.27983 0.86592 0.79758 0.79499 0.82143 1.20609 1.21225 1.19917 0.92865 0.92074 0.92574 0.91419 0.90711 0.84495 0.84839 0.93920 0.89950 0.90985 0.95358 0.93633 0.92621 0.96546 0.96888 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.32 37.16 0.35 -1.21 16 2 C 0.06 0.73 3.08 -66.64 -0.20 0.53 16 3 H 0.05 0.67 7.57 -51.93 -0.39 0.28 16 4 C -0.12 -1.33 6.29 -25.38 -0.16 -1.49 16 5 C 0.09 0.98 4.21 -65.85 -0.28 0.71 16 6 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 7 N -0.84 -8.46 9.34 -3.09 -0.03 -8.49 16 8 C 0.00 0.06 4.78 -1.75 -0.01 0.06 16 9 N -0.51 -7.88 5.03 -222.33 -1.12 -8.99 16 10 C 0.05 0.88 5.03 -3.82 -0.02 0.86 16 11 C -0.11 -2.28 4.82 -26.73 -0.13 -2.41 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 17 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 25 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 26 H 0.34 3.04 9.08 -39.29 -0.36 2.68 16 27 H 0.34 3.21 8.86 -39.29 -0.35 2.86 16 28 H 0.04 0.62 7.97 -51.93 -0.41 0.21 16 29 H 0.08 1.21 7.69 -51.93 -0.40 0.81 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.03 0.52 7.81 -51.93 -0.41 0.11 16 32 H 0.04 0.95 6.81 -51.93 -0.35 0.60 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 288.20 15.07 4.34 4.34 Total: -1.00 -30.23 288.20 -8.50 -38.72 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.41 Total: 0.37 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.00 Total: -16.27 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.41 Total: -44.05 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.23 -8.50 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702645138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.137 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds