Wall clock time and date at job start Mon Mar 30 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.90899 * 2 1 4 4 C 1.53988 * 109.92066 * 121.10127 * 2 1 3 5 5 C 1.54597 * 105.13968 * 120.57804 * 4 2 1 6 6 H 1.09005 * 110.72438 * 263.60114 * 5 4 2 7 7 N 1.46897 * 110.72556 * 140.32101 * 5 4 2 8 8 C 1.54933 * 102.92246 * 21.96028 * 5 4 2 9 9 N 1.47908 * 109.91932 * 238.89955 * 2 1 3 10 10 C 1.46898 * 110.99950 * 94.79818 * 9 2 1 11 11 C 1.53002 * 109.46654 * 170.00082 * 10 9 2 12 12 C 1.53003 * 109.46926 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47116 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00397 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00099 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99748 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00129 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47225 * 90.00027 * 17 15 13 19 19 H 1.48506 * 109.47225 * 210.00103 * 17 15 13 20 20 H 1.48497 * 109.47155 * 330.00005 * 17 15 13 21 21 H 1.09002 * 109.47153 * 300.69962 * 1 2 3 22 22 H 1.09001 * 109.46832 * 180.70153 * 1 2 3 23 23 H 1.09004 * 109.47261 * 60.70135 * 1 2 3 24 24 H 1.08996 * 110.31473 * 239.49721 * 4 2 1 25 25 H 1.09002 * 110.30761 * 1.56539 * 4 2 1 26 26 H 1.00902 * 111.00050 * 180.02562 * 7 5 4 27 27 H 1.00905 * 110.99871 * 303.95167 * 7 5 4 28 28 H 1.09001 * 110.67011 * 81.02251 * 8 5 4 29 29 H 1.09007 * 110.66674 * 204.15149 * 8 5 4 30 30 H 1.09001 * 109.47485 * 289.99966 * 10 9 2 31 31 H 1.08994 * 109.47368 * 50.00658 * 10 9 2 32 32 H 1.08993 * 109.47684 * 300.00183 * 11 10 9 33 33 H 1.09003 * 109.47049 * 60.00738 * 11 10 9 34 34 H 1.09001 * 109.47226 * 299.99892 * 12 11 10 35 35 H 1.08999 * 109.47072 * 60.00025 * 12 11 10 36 36 H 0.97004 * 119.99903 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0249 0.0000 4 6 2.0546 -0.7478 1.2396 5 6 2.9059 -1.9104 0.6795 6 1 2.3215 -2.8294 0.6339 7 7 4.1179 -2.1032 1.4869 8 6 3.2682 -1.4198 -0.7447 9 7 2.0339 -0.7183 -1.1907 10 6 2.3211 0.2164 -2.2869 11 6 3.0673 -0.5191 -3.4019 12 6 3.3670 0.4545 -4.5434 13 6 4.1014 -0.2701 -5.6419 14 1 4.3318 -1.3199 -5.5363 15 6 4.4802 0.4075 -6.7814 16 7 4.2011 1.6863 -6.9094 17 14 5.3911 -0.4905 -8.1427 18 1 4.4113 -1.0563 -9.1044 19 1 6.2865 0.4601 -8.8499 20 1 6.1999 -1.5891 -7.5560 21 1 -0.3633 0.5247 0.8837 22 1 -0.3633 -1.0276 0.0126 23 1 -0.3634 0.5029 -0.8962 24 1 2.6714 -0.0862 1.8478 25 1 1.2228 -1.1353 1.8279 26 1 4.6770 -2.8610 1.1246 27 1 4.6558 -1.2511 1.5408 28 1 4.1098 -0.7279 -0.7109 29 1 3.4889 -2.2641 -1.3979 30 1 1.3855 0.6161 -2.6782 31 1 2.9382 1.0342 -1.9149 32 1 4.0028 -0.9189 -3.0108 33 1 2.4501 -1.3369 -3.7741 34 1 2.4317 0.8546 -4.9348 35 1 3.9843 1.2720 -4.1710 36 1 4.4672 2.1629 -7.7113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702645138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:24 Heat of formation + Delta-G solvation = -39.278085 kcal Electronic energy + Delta-G solvation = -14309.335842 eV Core-core repulsion = 12019.319691 eV Total energy + Delta-G solvation = -2290.016151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45514 -36.49409 -35.05931 -33.86903 -31.77161 -29.56124 -27.77149 -26.48333 -24.33897 -22.43955 -21.27360 -20.80129 -18.54018 -17.43547 -16.92937 -16.47409 -16.27502 -15.34310 -15.13162 -14.59606 -14.42937 -14.10057 -13.87640 -13.71499 -13.21715 -12.91566 -12.82343 -12.65949 -12.51968 -12.23164 -12.08101 -11.81140 -11.60786 -11.47180 -11.37980 -11.10151 -10.58888 -9.73230 -9.39497 -8.23362 -6.35076 1.38003 1.39766 1.50801 2.38441 2.91763 3.09663 3.50660 3.71293 3.86239 4.09767 4.16662 4.21022 4.31362 4.40060 4.53099 4.62193 4.76898 4.77572 4.88752 4.91768 4.99633 5.06535 5.13212 5.15388 5.24607 5.41654 5.46674 5.67529 5.80379 5.92793 6.05789 6.20389 6.23067 6.53525 6.81242 7.34439 8.88717 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045112 B = 0.005881 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.529846 B = 4759.708738 C = 5187.483075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.052 3.948 3 H 0.043 0.957 4 C -0.111 4.111 5 C 0.096 3.904 6 H 0.095 0.905 7 N -0.837 5.837 8 C 0.002 3.998 9 N -0.517 5.517 10 C 0.061 3.939 11 C -0.090 4.090 12 C 0.026 3.974 13 C -0.545 4.545 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.042 0.958 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.350 0.650 27 H 0.344 0.656 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.049 0.951 33 H 0.051 0.949 34 H -0.009 1.009 35 H -0.011 1.011 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.221 -5.560 15.871 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.056 4.056 3 H 0.061 0.939 4 C -0.150 4.150 5 C -0.017 4.017 6 H 0.113 0.887 7 N -0.366 5.366 8 C -0.128 4.128 9 N -0.242 5.242 10 C -0.067 4.067 11 C -0.127 4.127 12 C -0.012 4.012 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.187 1.187 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.164 0.836 27 H 0.157 0.843 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.010 0.990 35 H 0.007 0.993 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.095 -5.945 16.183 17.720 hybrid contribution 1.583 0.954 -1.820 2.594 sum -2.512 -4.991 14.363 15.412 Atomic orbital electron populations 1.21721 0.92982 1.02408 1.01593 1.22558 0.97326 0.95992 0.89763 0.93893 1.22464 1.00046 0.96451 0.96002 1.22310 0.92414 0.98934 0.88042 0.88725 1.58963 1.10203 1.11864 1.55609 1.24154 0.91697 0.98302 0.98657 1.64777 1.26658 1.26421 1.06309 1.22184 0.99028 0.93426 0.92104 1.21419 0.98404 0.98261 0.94660 1.18967 0.94759 0.94293 0.93140 1.21664 1.36957 0.96586 1.03042 0.92332 1.26008 0.96926 0.95687 1.01221 1.70101 1.48291 1.10016 1.28975 0.85418 0.78497 0.78385 0.78581 1.19649 1.20553 1.18740 0.90569 0.91905 0.93900 0.90642 0.89227 0.83648 0.84313 0.94680 0.90883 0.91555 0.95907 0.93265 0.93031 0.99018 0.99260 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.32 71.98 0.67 -2.13 16 2 C 0.05 1.28 3.08 45.05 0.14 1.42 16 3 H 0.04 1.12 7.57 -2.38 -0.02 1.10 16 4 C -0.11 -2.22 6.29 31.47 0.20 -2.03 16 5 C 0.10 2.02 4.21 46.12 0.19 2.21 16 6 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 7 N -0.84 -14.99 9.34 -163.70 -1.53 -16.52 16 8 C 0.00 0.06 4.78 86.59 0.41 0.47 16 9 N -0.52 -15.61 5.03 -857.33 -4.32 -19.93 16 10 C 0.06 2.23 5.03 86.30 0.43 2.66 16 11 C -0.09 -3.87 4.82 30.60 0.15 -3.73 16 12 C 0.03 1.42 4.97 29.85 0.15 1.57 16 13 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 17 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.07 1.42 7.95 -2.39 -0.02 1.40 16 25 H 0.09 1.57 7.69 -2.39 -0.02 1.55 16 26 H 0.35 5.50 9.08 -89.69 -0.81 4.68 16 27 H 0.34 5.78 8.86 -89.69 -0.79 4.99 16 28 H 0.03 1.00 7.97 -2.39 -0.02 0.98 16 29 H 0.07 2.09 7.69 -2.38 -0.02 2.07 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.02 0.85 7.81 -2.39 -0.02 0.83 16 32 H 0.05 2.07 6.81 -2.39 -0.02 2.05 16 33 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -64.47 288.20 -1.06 -65.52 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -0.56 Total: 12.28 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.04 Total: -30.73 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -5.56 Total: -93.90 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.47 -1.06 -65.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702645138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.245 kcal (2) G-P(sol) polarization free energy of solvation -64.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds