Wall clock time and date at job start Mon Mar 30 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.01265 * 2 1 4 4 C 1.54315 * 109.89010 * 121.12177 * 2 1 3 5 5 C 1.55140 * 103.01971 * 141.68675 * 4 2 1 6 6 H 1.08998 * 110.99412 * 82.43873 * 5 4 2 7 7 N 1.46901 * 110.98840 * 206.21917 * 5 4 2 8 8 C 1.54905 * 101.65254 * 324.34577 * 5 4 2 9 9 N 1.47440 * 109.88371 * 238.88928 * 2 1 3 10 10 C 1.46902 * 111.00264 * 3.85327 * 9 2 1 11 11 C 1.52999 * 109.47161 * 172.10447 * 10 9 2 12 12 C 1.52999 * 109.47291 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47362 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00440 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00129 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99857 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00023 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47421 * 59.99873 * 17 15 13 19 19 H 1.48500 * 109.47180 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47263 * 299.99517 * 17 15 13 21 21 H 1.08991 * 109.47553 * 175.68012 * 1 2 3 22 22 H 1.09005 * 109.46746 * 295.68563 * 1 2 3 23 23 H 1.08998 * 109.47250 * 55.67342 * 1 2 3 24 24 H 1.08997 * 110.70671 * 260.06977 * 4 2 1 25 25 H 1.09002 * 110.70904 * 23.12955 * 4 2 1 26 26 H 1.00906 * 110.99508 * 180.02562 * 7 5 4 27 27 H 1.00897 * 110.99825 * 303.94813 * 7 5 4 28 28 H 1.09002 * 110.37648 * 278.24109 * 8 5 4 29 29 H 1.09001 * 110.37333 * 155.90159 * 8 5 4 30 30 H 1.08995 * 109.47023 * 292.10084 * 10 9 2 31 31 H 1.09000 * 109.46973 * 52.10684 * 10 9 2 32 32 H 1.09009 * 109.47427 * 299.99841 * 11 10 9 33 33 H 1.09004 * 109.47283 * 59.99560 * 11 10 9 34 34 H 1.09007 * 109.47052 * 299.99938 * 12 11 10 35 35 H 1.08995 * 109.47417 * 59.99732 * 12 11 10 36 36 H 0.96999 * 120.00080 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7500 1.2422 5 6 3.2892 -1.5135 0.6938 6 1 4.1658 -0.8666 0.6612 7 7 3.5578 -2.7194 1.4887 8 6 2.8188 -1.8833 -0.7350 9 7 2.0315 -0.7164 -1.1871 10 6 0.9238 -1.1338 -2.0571 11 6 1.4859 -1.6949 -3.3648 12 6 0.3323 -2.1290 -4.2711 13 6 0.8859 -2.6822 -5.5589 14 1 1.9539 -2.7200 -5.7155 15 6 0.0291 -3.1402 -6.5373 16 7 -1.2713 -3.0946 -6.3465 17 14 0.7154 -3.8253 -8.1338 18 1 1.5812 -4.9952 -7.8389 19 1 -0.4043 -4.2479 -9.0130 20 1 1.5149 -2.7780 -8.8188 21 1 -0.3634 -1.0246 -0.0774 22 1 -0.3633 0.4455 0.9262 23 1 -0.3633 0.5795 -0.8487 24 1 2.3515 -0.0467 2.0203 25 1 1.3044 -1.4451 1.6186 26 1 4.3607 -3.2158 1.1324 27 1 3.6783 -2.4901 2.4639 28 1 2.1938 -2.7759 -0.7097 29 1 3.6771 -2.0383 -1.3888 30 1 0.3369 -1.9025 -1.5545 31 1 0.2884 -0.2750 -2.2736 32 1 2.0729 -0.9261 -3.8675 33 1 2.1214 -2.5536 -3.1483 34 1 -0.2551 -2.8976 -3.7687 35 1 -0.3028 -1.2700 -4.4876 36 1 -1.8741 -3.4165 -7.0349 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702645141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:26 Heat of formation + Delta-G solvation = -32.630396 kcal Electronic energy + Delta-G solvation = -14379.381653 eV Core-core repulsion = 12089.653767 eV Total energy + Delta-G solvation = -2289.727886 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.61897 -36.42003 -35.15439 -33.65790 -31.67219 -30.09373 -27.68921 -26.23635 -24.60987 -22.29901 -21.43834 -20.31461 -18.44310 -17.35737 -16.74713 -16.42797 -16.30640 -16.11959 -15.08514 -14.91714 -14.42471 -14.10133 -13.87582 -13.48144 -13.22578 -12.90318 -12.77580 -12.50669 -12.33425 -12.19832 -11.99113 -11.90593 -11.63055 -11.41154 -11.31339 -11.08285 -10.55144 -9.67870 -9.22693 -8.20139 -6.31571 1.39487 1.43207 1.51181 2.41034 2.92734 3.12580 3.54866 3.68763 3.72892 4.11899 4.19385 4.23883 4.35636 4.48629 4.54505 4.67158 4.72030 4.83590 4.87829 4.93521 4.95024 5.03807 5.09698 5.19177 5.26297 5.39815 5.51050 5.73082 5.84739 6.06951 6.11266 6.25583 6.28210 6.60728 6.84510 7.37489 8.91753 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047388 B = 0.005921 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.720073 B = 4727.911797 C = 5103.520285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.064 3.936 3 H 0.094 0.906 4 C -0.124 4.124 5 C 0.085 3.915 6 H 0.060 0.940 7 N -0.848 5.848 8 C 0.048 3.952 9 N -0.533 5.533 10 C 0.065 3.935 11 C -0.090 4.090 12 C 0.027 3.973 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.266 1.266 21 H 0.044 0.956 22 H 0.080 0.920 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.350 0.650 27 H 0.354 0.646 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.043 0.957 34 H -0.012 1.012 35 H -0.007 1.007 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.337 4.856 16.085 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.044 4.044 3 H 0.111 0.889 4 C -0.163 4.163 5 C -0.027 4.027 6 H 0.078 0.922 7 N -0.381 5.381 8 C -0.080 4.080 9 N -0.258 5.258 10 C -0.063 4.063 11 C -0.128 4.128 12 C -0.010 4.010 13 C -0.583 4.583 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.191 1.191 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.113 0.887 25 H 0.088 0.912 26 H 0.164 0.836 27 H 0.169 0.831 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.006 0.994 35 H 0.011 0.989 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.765 4.919 15.483 18.006 hybrid contribution 0.239 -0.590 -0.430 0.768 sum 8.004 4.329 15.053 17.589 Atomic orbital electron populations 1.22310 0.95597 1.01628 1.02865 1.22521 0.94369 0.98982 0.88529 0.88856 1.22873 0.97011 0.98975 0.97411 1.22360 0.97199 0.91027 0.92112 0.92228 1.58555 1.48143 1.24159 1.07198 1.23002 0.97460 0.92058 0.95482 1.63698 1.22216 1.23151 1.16724 1.22241 0.92484 0.98523 0.93054 1.21391 0.97990 0.98888 0.94488 1.18954 0.93812 0.94448 0.93826 1.21654 0.93306 1.41201 1.02157 0.92414 1.26001 0.95098 0.96119 1.02593 1.70092 1.03305 1.48164 1.35814 0.85479 0.77972 0.79021 0.78446 1.19208 1.20593 1.19105 0.93686 0.90141 0.92503 0.88744 0.91192 0.83625 0.83141 0.94575 0.91267 0.95785 0.90855 0.93111 0.93859 0.99374 0.98889 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 7.83 71.98 0.56 -3.48 16 2 C 0.06 1.57 4.02 45.26 0.18 1.75 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.12 -2.49 6.13 31.77 0.19 -2.30 16 5 C 0.09 1.81 4.18 46.30 0.19 2.01 16 6 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 7 N -0.85 -15.37 9.38 -162.96 -1.53 -16.90 16 8 C 0.05 1.41 5.37 86.77 0.47 1.88 16 9 N -0.53 -16.65 5.18 -860.56 -4.46 -21.11 16 10 C 0.06 2.43 3.67 86.30 0.32 2.74 16 11 C -0.09 -4.01 5.17 30.59 0.16 -3.85 16 12 C 0.03 1.51 4.97 29.85 0.15 1.66 16 13 C -0.55 -32.44 9.11 25.60 0.23 -32.20 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 15 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 16 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 17 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H 0.04 1.24 6.60 -2.39 -0.02 1.22 16 22 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.06 1.48 6.72 -2.39 -0.02 1.46 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.54 7.85 -2.39 -0.02 1.52 16 26 H 0.35 5.54 9.08 -89.69 -0.81 4.73 16 27 H 0.35 4.75 9.03 -89.70 -0.81 3.94 16 28 H 0.04 1.21 7.66 -2.39 -0.02 1.19 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.02 0.93 6.64 -2.39 -0.02 0.92 16 31 H 0.07 2.73 6.32 -2.39 -0.02 2.71 16 32 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.04 1.92 7.42 -2.38 -0.02 1.90 16 34 H -0.01 -0.73 8.14 -2.38 -0.02 -0.74 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -66.55 283.14 -1.32 -67.87 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -0.57 Total: 12.11 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 2.92 Total: -31.36 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -5.70 Total: -96.03 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -66.55 -1.32 -67.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702645141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.241 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds