Wall clock time and date at job start Mon Mar 30 2020 02:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.72596 * 2 1 4 4 C 1.54935 * 110.66696 * 236.90790 * 2 1 3 5 5 C 1.54596 * 102.92268 * 204.15148 * 4 2 1 6 6 H 1.08997 * 110.39280 * 262.99752 * 5 4 2 7 7 N 1.46895 * 110.31079 * 140.86924 * 5 4 2 8 8 C 1.53999 * 105.13869 * 21.95668 * 5 4 2 9 9 N 1.47902 * 107.05652 * 1.22324 * 8 5 4 10 10 C 1.46902 * 110.99807 * 214.15895 * 9 8 5 11 11 C 1.53000 * 109.47379 * 65.29106 * 10 9 8 12 12 C 1.52993 * 109.46973 * 185.44416 * 11 10 9 13 13 C 1.50703 * 109.47289 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99318 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00460 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99788 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00076 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46857 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.46839 * 120.00222 * 17 15 13 20 20 H 1.48500 * 109.47091 * 240.00191 * 17 15 13 21 21 H 1.09001 * 109.46532 * 296.90430 * 1 2 3 22 22 H 1.09003 * 109.47204 * 56.89990 * 1 2 3 23 23 H 1.08991 * 109.47072 * 176.90070 * 1 2 3 24 24 H 1.08997 * 110.73030 * 85.79281 * 4 2 1 25 25 H 1.08999 * 110.87623 * 322.57936 * 4 2 1 26 26 H 1.00903 * 111.00249 * 182.82940 * 7 5 4 27 27 H 1.00901 * 111.00023 * 306.78532 * 7 5 4 28 28 H 1.09003 * 109.91028 * 241.87627 * 8 5 4 29 29 H 1.08993 * 110.07983 * 120.66995 * 8 5 4 30 30 H 1.09001 * 109.47107 * 305.28941 * 10 9 8 31 31 H 1.09003 * 109.46844 * 185.29556 * 10 9 8 32 32 H 1.08997 * 109.47057 * 65.44571 * 11 10 9 33 33 H 1.09000 * 109.46886 * 305.44354 * 11 10 9 34 34 H 1.08997 * 109.47103 * 60.00183 * 12 11 10 35 35 H 1.09000 * 109.47264 * 299.99706 * 12 11 10 36 36 H 0.97000 * 119.99686 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0769 -0.7915 -1.2145 5 6 3.4853 -1.2197 -0.7424 6 1 4.2386 -0.5271 -1.1178 7 7 3.7806 -2.5863 -1.1930 8 6 3.4279 -1.1648 0.7956 9 7 2.0543 -0.7589 1.1642 10 6 2.0581 0.0719 2.3757 11 6 2.7797 1.3900 2.0880 12 6 2.9033 2.1968 3.3820 13 6 3.6146 3.4949 3.0988 14 1 3.9458 3.7214 2.0960 15 6 3.8426 4.3931 4.1196 16 7 3.4397 4.1169 5.3407 17 14 4.7236 6.0024 3.7683 18 1 5.0716 6.0716 2.3263 19 1 3.8355 7.1397 4.1190 20 1 5.9647 6.0748 4.5805 21 1 -0.3632 0.4650 0.9165 22 1 -0.3634 0.5612 -0.8609 23 1 -0.3633 -1.0261 -0.0556 24 1 2.1431 -0.1512 -2.0941 25 1 1.4572 -1.6643 -1.4203 26 1 4.6790 -2.8935 -0.8515 27 1 3.0504 -3.2245 -0.9147 28 1 4.1441 -0.4322 1.1679 29 1 3.6498 -2.1466 1.2136 30 1 2.5736 -0.4570 3.1774 31 1 1.0314 0.2782 2.6780 32 1 2.2112 1.9631 1.3555 33 1 3.7742 1.1812 1.6936 34 1 3.4717 1.6238 4.1145 35 1 1.9088 2.4056 3.7764 36 1 3.5998 4.7491 6.0588 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702645143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:29 Heat of formation + Delta-G solvation = -12.274296 kcal Electronic energy + Delta-G solvation = -14530.056538 eV Core-core repulsion = 12241.211359 eV Total energy + Delta-G solvation = -2288.845179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.47523 -35.00595 -33.35463 -32.04071 -30.36515 -28.41691 -26.14322 -24.97565 -22.85056 -21.11385 -20.50740 -18.89931 -16.67112 -16.12339 -15.33250 -15.00550 -14.58937 -14.42505 -14.18160 -13.05383 -12.82963 -12.64846 -12.29250 -11.99379 -11.71449 -11.68831 -11.36229 -11.09178 -10.86054 -10.78461 -10.66554 -10.53104 -10.46002 -9.59923 -9.43528 -9.19237 -8.75727 -8.37209 -7.94031 -6.02066 -4.04853 3.28733 3.36236 3.40307 4.24286 4.43361 4.46595 4.78349 4.88340 5.20661 5.31399 5.33628 5.50507 5.61690 5.70423 5.76378 5.83830 5.91170 5.96394 6.03954 6.15839 6.21498 6.29727 6.37062 6.59746 6.77367 7.05820 7.07535 7.17573 7.39201 7.40004 7.64267 7.78332 7.97275 8.40406 9.02264 9.59499 11.09042 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041331 B = 0.006396 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.289297 B = 4376.720387 C = 4525.962025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.047 3.953 3 H 0.070 0.930 4 C -0.110 4.110 5 C 0.080 3.920 6 H 0.084 0.916 7 N -0.840 5.840 8 C -0.004 4.004 9 N -0.513 5.513 10 C 0.042 3.958 11 C -0.145 4.145 12 C 0.025 3.975 13 C -0.520 4.520 14 H 0.053 0.947 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.339 0.661 27 H 0.342 0.658 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.014 0.986 35 H 0.016 0.984 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 -10.528 -10.514 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.061 4.061 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.032 4.032 6 H 0.102 0.898 7 N -0.369 5.369 8 C -0.135 4.135 9 N -0.236 5.236 10 C -0.086 4.086 11 C -0.183 4.183 12 C -0.013 4.013 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.779 -10.624 -10.964 15.518 hybrid contribution 1.095 1.492 0.985 2.097 sum -1.683 -9.132 -9.979 13.631 Atomic orbital electron populations 1.21622 0.94059 1.01755 1.01564 1.22926 0.95978 0.97239 0.89946 0.91253 1.22575 0.94976 1.00047 0.97205 1.22332 0.97871 0.91009 0.92028 0.89763 1.58961 1.07506 1.03239 1.67214 1.23807 0.91948 1.01147 0.96549 1.64976 1.17596 1.37617 1.03436 1.22412 1.01202 0.93136 0.91821 1.22237 0.98762 0.95787 1.01527 1.19024 0.97042 0.94089 0.91140 1.21289 1.37093 1.02832 0.94648 0.92848 1.25029 0.95885 0.98416 0.95127 1.69975 1.47055 1.36190 1.00235 0.86557 0.79474 0.83764 0.78351 1.19790 1.20943 1.20982 0.92414 0.92626 0.92400 0.91138 0.90670 0.84862 0.84551 0.92413 0.91236 0.91297 0.90965 0.92956 0.93336 0.96716 0.96572 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.51 37.16 0.35 -1.32 16 2 C 0.05 0.67 2.68 -65.79 -0.18 0.49 16 3 H 0.07 1.10 5.49 -51.93 -0.29 0.81 16 4 C -0.11 -1.33 6.19 -24.87 -0.15 -1.48 16 5 C 0.08 0.97 4.14 -66.36 -0.27 0.70 16 6 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 7 N -0.84 -8.74 9.19 -3.52 -0.03 -8.77 16 8 C 0.00 -0.06 6.24 -2.75 -0.02 -0.08 16 9 N -0.51 -7.78 5.23 -222.62 -1.16 -8.95 16 10 C 0.04 0.74 5.32 -3.82 -0.02 0.72 16 11 C -0.14 -2.99 4.29 -26.73 -0.11 -3.10 16 12 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 13 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 21 H 0.06 0.79 7.58 -51.93 -0.39 0.39 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.88 7.79 -51.93 -0.40 0.47 16 26 H 0.34 3.07 9.06 -39.29 -0.36 2.71 16 27 H 0.34 3.33 8.83 -39.29 -0.35 2.98 16 28 H 0.06 0.90 5.80 -51.93 -0.30 0.60 16 29 H 0.07 0.91 7.93 -51.93 -0.41 0.49 16 30 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.07 1.28 7.62 -51.93 -0.40 0.88 16 32 H 0.05 1.08 6.26 -51.93 -0.33 0.76 16 33 H 0.05 1.00 6.12 -51.93 -0.32 0.69 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 281.95 15.07 4.25 4.25 Total: -1.00 -29.90 281.95 -8.22 -38.13 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.04 Total: 2.19 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -0.95 Total: -17.25 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.46 Total: -44.12 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.90 -8.22 -38.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702645143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.851 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds