Wall clock time and date at job start Mon Mar 30 2020 02:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.72596 * 2 1 4 4 C 1.54935 * 110.66696 * 236.90790 * 2 1 3 5 5 C 1.54596 * 102.92268 * 204.15148 * 4 2 1 6 6 H 1.08997 * 110.39280 * 262.99752 * 5 4 2 7 7 N 1.46895 * 110.31079 * 140.86924 * 5 4 2 8 8 C 1.53999 * 105.13869 * 21.95668 * 5 4 2 9 9 N 1.47902 * 107.05652 * 1.22324 * 8 5 4 10 10 C 1.46902 * 110.99807 * 214.15895 * 9 8 5 11 11 C 1.53000 * 109.47379 * 65.29106 * 10 9 8 12 12 C 1.52993 * 109.46973 * 185.44416 * 11 10 9 13 13 C 1.50703 * 109.47289 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99318 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00460 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99788 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00076 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46857 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.46839 * 120.00222 * 17 15 13 20 20 H 1.48500 * 109.47091 * 240.00191 * 17 15 13 21 21 H 1.09001 * 109.46532 * 296.90430 * 1 2 3 22 22 H 1.09003 * 109.47204 * 56.89990 * 1 2 3 23 23 H 1.08991 * 109.47072 * 176.90070 * 1 2 3 24 24 H 1.08997 * 110.73030 * 85.79281 * 4 2 1 25 25 H 1.08999 * 110.87623 * 322.57936 * 4 2 1 26 26 H 1.00903 * 111.00249 * 182.82940 * 7 5 4 27 27 H 1.00901 * 111.00023 * 306.78532 * 7 5 4 28 28 H 1.09003 * 109.91028 * 241.87627 * 8 5 4 29 29 H 1.08993 * 110.07983 * 120.66995 * 8 5 4 30 30 H 1.09001 * 109.47107 * 305.28941 * 10 9 8 31 31 H 1.09003 * 109.46844 * 185.29556 * 10 9 8 32 32 H 1.08997 * 109.47057 * 65.44571 * 11 10 9 33 33 H 1.09000 * 109.46886 * 305.44354 * 11 10 9 34 34 H 1.08997 * 109.47103 * 60.00183 * 12 11 10 35 35 H 1.09000 * 109.47264 * 299.99706 * 12 11 10 36 36 H 0.97000 * 119.99686 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0769 -0.7915 -1.2145 5 6 3.4853 -1.2197 -0.7424 6 1 4.2386 -0.5271 -1.1178 7 7 3.7806 -2.5863 -1.1930 8 6 3.4279 -1.1648 0.7956 9 7 2.0543 -0.7589 1.1642 10 6 2.0581 0.0719 2.3757 11 6 2.7797 1.3900 2.0880 12 6 2.9033 2.1968 3.3820 13 6 3.6146 3.4949 3.0988 14 1 3.9458 3.7214 2.0960 15 6 3.8426 4.3931 4.1196 16 7 3.4397 4.1169 5.3407 17 14 4.7236 6.0024 3.7683 18 1 5.0716 6.0716 2.3263 19 1 3.8355 7.1397 4.1190 20 1 5.9647 6.0748 4.5805 21 1 -0.3632 0.4650 0.9165 22 1 -0.3634 0.5612 -0.8609 23 1 -0.3633 -1.0261 -0.0556 24 1 2.1431 -0.1512 -2.0941 25 1 1.4572 -1.6643 -1.4203 26 1 4.6790 -2.8935 -0.8515 27 1 3.0504 -3.2245 -0.9147 28 1 4.1441 -0.4322 1.1679 29 1 3.6498 -2.1466 1.2136 30 1 2.5736 -0.4570 3.1774 31 1 1.0314 0.2782 2.6780 32 1 2.2112 1.9631 1.3555 33 1 3.7742 1.1812 1.6936 34 1 3.4717 1.6238 4.1145 35 1 1.9088 2.4056 3.7764 36 1 3.5998 4.7491 6.0588 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702645143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:29 Heat of formation + Delta-G solvation = -33.940152 kcal Electronic energy + Delta-G solvation = -14530.996040 eV Core-core repulsion = 12241.211359 eV Total energy + Delta-G solvation = -2289.784681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65476 -36.48244 -35.05205 -33.52583 -31.89641 -29.59924 -27.76269 -26.29439 -24.45932 -22.84153 -21.55035 -20.24026 -18.57063 -17.52895 -16.63292 -16.24355 -16.20330 -15.84669 -15.47513 -14.58128 -14.29550 -14.08391 -13.69650 -13.39213 -13.11001 -12.97061 -12.85689 -12.66161 -12.43849 -12.32307 -12.25917 -11.92222 -11.51971 -11.44794 -11.32917 -11.21484 -10.59728 -9.65104 -9.28624 -8.23948 -6.36378 1.36511 1.36631 1.50042 2.37007 3.04604 3.08307 3.49567 3.73121 3.85766 4.09043 4.18275 4.30240 4.33817 4.45611 4.53958 4.56749 4.75718 4.77913 4.80642 4.96452 5.03218 5.13043 5.14461 5.18714 5.27088 5.38920 5.47056 5.64801 5.79324 5.98823 6.05521 6.20297 6.22035 6.61092 6.80123 7.33318 8.87416 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041331 B = 0.006396 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.289297 B = 4376.720387 C = 4525.962025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.042 3.958 3 H 0.050 0.950 4 C -0.101 4.101 5 C 0.086 3.914 6 H 0.080 0.920 7 N -0.836 5.836 8 C -0.005 4.005 9 N -0.508 5.508 10 C 0.054 3.946 11 C -0.126 4.126 12 C 0.029 3.971 13 C -0.544 4.544 14 H 0.056 0.944 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.348 0.652 27 H 0.348 0.652 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.047 0.953 34 H -0.010 1.010 35 H -0.008 1.008 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -10.727 -12.173 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.066 4.066 3 H 0.067 0.933 4 C -0.140 4.140 5 C -0.026 4.026 6 H 0.099 0.901 7 N -0.366 5.366 8 C -0.135 4.135 9 N -0.232 5.232 10 C -0.075 4.075 11 C -0.164 4.164 12 C -0.009 4.009 13 C -0.582 4.582 14 H 0.074 0.926 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.789 3.211 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.202 1.202 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.161 0.839 27 H 0.161 0.839 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.008 0.992 35 H 0.010 0.990 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.539 -10.845 -12.640 16.847 hybrid contribution 1.015 1.512 1.512 2.367 sum -1.524 -9.333 -11.127 14.603 Atomic orbital electron populations 1.21608 0.92925 1.02511 1.01594 1.23015 0.96947 0.96342 0.90336 0.93256 1.22539 0.94728 1.00244 0.96468 1.22230 0.97943 0.92057 0.90419 0.90144 1.58938 1.08295 1.02464 1.66878 1.23900 0.90570 1.00923 0.98156 1.65025 1.18480 1.36663 1.02993 1.22186 1.00412 0.91799 0.93088 1.22003 0.99247 0.96623 0.98557 1.18920 0.94897 0.94053 0.93039 1.21698 1.37571 1.04032 0.94940 0.92608 1.25988 0.96565 1.02423 0.94796 1.70101 1.48106 1.37752 1.01300 0.85401 0.78247 0.78761 0.78670 1.18737 1.20120 1.20202 0.93914 0.90923 0.91431 0.90079 0.89638 0.83874 0.83853 0.94474 0.90196 0.91904 0.91159 0.92872 0.93410 0.99208 0.98961 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.51 71.98 0.68 -2.37 16 2 C 0.04 1.12 2.68 45.26 0.12 1.24 16 3 H 0.05 1.53 5.49 -2.39 -0.01 1.52 16 4 C -0.10 -2.22 6.19 31.80 0.20 -2.02 16 5 C 0.09 1.94 4.14 45.80 0.19 2.13 16 6 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 7 N -0.84 -15.29 9.19 -165.04 -1.52 -16.81 16 8 C -0.01 -0.14 6.24 86.45 0.54 0.40 16 9 N -0.51 -14.97 5.23 -858.24 -4.49 -19.46 16 10 C 0.05 1.91 5.32 86.30 0.46 2.37 16 11 C -0.13 -5.29 4.29 30.59 0.13 -5.16 16 12 C 0.03 1.54 4.97 29.85 0.15 1.69 16 13 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 14 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 15 C 0.00 0.01 5.46 84.65 0.46 0.47 16 16 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 17 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H 0.04 1.13 7.58 -2.39 -0.02 1.11 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.07 1.47 8.11 -2.39 -0.02 1.45 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 1.72 7.79 -2.39 -0.02 1.70 16 26 H 0.35 5.48 9.06 -89.69 -0.81 4.67 16 27 H 0.35 5.80 8.83 -89.69 -0.79 5.01 16 28 H 0.04 1.15 5.80 -2.39 -0.01 1.14 16 29 H 0.08 1.96 7.93 -2.39 -0.02 1.94 16 30 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 31 H 0.07 2.52 7.62 -2.39 -0.02 2.51 16 32 H 0.05 2.22 6.26 -2.39 -0.01 2.21 16 33 H 0.05 2.01 6.12 -2.39 -0.01 1.99 16 34 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -63.76 281.95 -1.07 -64.84 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -0.54 Total: 14.51 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 3.17 Total: -32.69 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -5.72 Total: -93.43 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.76 -1.07 -64.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702645143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.895 kcal (2) G-P(sol) polarization free energy of solvation -63.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds