Wall clock time and date at job start Mon Mar 30 2020 02:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47027 * 2 1 4 4 C 1.50698 * 109.47321 * 240.00253 * 2 1 3 5 5 H 1.08002 * 119.99922 * 245.46911 * 4 2 1 6 6 C 1.37882 * 120.00348 * 65.46587 * 4 2 1 7 7 N 1.31520 * 119.99465 * 9.46459 * 6 4 2 8 8 Si 1.86793 * 120.00353 * 189.46235 * 6 4 2 9 9 H 1.48505 * 109.46863 * 84.99694 * 8 6 4 10 10 H 1.48497 * 109.47222 * 204.99159 * 8 6 4 11 11 H 1.48494 * 109.47138 * 324.99794 * 8 6 4 12 12 N 1.46900 * 109.47020 * 120.00096 * 2 1 3 13 13 C 1.48559 * 111.00098 * 184.58160 * 12 2 1 14 14 C 1.54381 * 104.59832 * 159.04166 * 13 12 2 15 15 H 1.08996 * 110.40899 * 95.08520 * 14 13 12 16 16 C 1.53001 * 110.32272 * 217.25513 * 14 13 12 17 17 C 1.54259 * 105.05634 * 336.14705 * 14 13 12 18 18 H 1.09003 * 110.32257 * 118.89477 * 17 14 13 19 19 C 1.52994 * 110.32503 * 241.00072 * 17 14 13 20 20 N 1.46897 * 109.47231 * 185.00077 * 19 17 14 21 21 C 1.48557 * 110.99965 * 300.00113 * 12 2 1 22 22 H 1.09005 * 109.47079 * 184.26508 * 1 2 3 23 23 H 1.08996 * 109.47581 * 304.26979 * 1 2 3 24 24 H 1.08998 * 109.47014 * 64.27107 * 1 2 3 25 25 H 0.96996 * 119.99687 * 180.02562 * 7 6 4 26 26 H 1.09005 * 110.40986 * 40.25876 * 13 12 2 27 27 H 1.09004 * 110.41347 * 277.82509 * 13 12 2 28 28 H 1.09007 * 109.46622 * 175.63675 * 16 14 13 29 29 H 1.08994 * 109.47443 * 55.63663 * 16 14 13 30 30 H 1.09000 * 109.46703 * 295.63119 * 16 14 13 31 31 H 1.08998 * 109.47498 * 305.00378 * 19 17 14 32 32 H 1.09002 * 109.47274 * 65.00476 * 19 17 14 33 33 H 1.00900 * 111.00040 * 56.05038 * 20 19 17 34 34 H 1.00900 * 111.00232 * 179.97438 * 20 19 17 35 35 H 1.08993 * 110.41089 * 82.18222 * 21 12 2 36 36 H 1.09002 * 110.41210 * 319.73623 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7947 -0.1772 -2.4797 7 7 1.2978 1.0351 -2.5935 8 14 2.1787 -1.1768 -4.0102 9 1 1.0281 -2.0612 -4.3253 10 1 2.4248 -0.2594 -5.1517 11 1 3.3881 -2.0044 -3.7705 12 7 2.0196 -0.6925 1.1994 13 6 3.5005 -0.6172 1.2905 14 6 3.8123 -0.8749 2.7803 15 1 4.0398 -1.9281 2.9443 16 6 4.9828 -0.0018 3.2370 17 6 2.5247 -0.4813 3.5332 18 1 2.1193 -1.3419 4.0653 19 6 2.8086 0.6611 4.5104 20 7 1.6025 0.9402 5.3011 21 6 1.5432 -0.0189 2.4348 22 1 -0.3633 -1.0249 0.0764 23 1 -0.3634 0.5786 0.8492 24 1 -0.3633 0.4461 -0.9258 25 1 1.1302 1.4101 -3.4722 26 1 3.8497 0.3721 0.9945 27 1 3.9592 -1.3851 0.6676 28 1 5.1411 -0.1370 4.3070 29 1 4.7570 1.0447 3.0325 30 1 5.8843 -0.2913 2.6970 31 1 3.6221 0.3753 5.1772 32 1 3.0923 1.5539 3.9531 33 1 1.2819 0.1102 5.7769 34 1 1.7646 1.6914 5.9550 35 1 0.5283 -0.3365 2.6737 36 1 1.5861 1.0640 2.3181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708867171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:25 Heat of formation + Delta-G solvation = -4.718591 kcal Electronic energy + Delta-G solvation = -14939.861245 eV Core-core repulsion = 12651.343706 eV Total energy + Delta-G solvation = -2288.517539 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.96799 -35.17078 -33.29858 -31.86699 -29.21720 -28.35267 -25.35085 -24.64442 -23.63001 -21.24868 -19.41382 -18.50309 -16.25482 -16.12023 -15.06974 -14.82966 -14.65696 -13.82810 -13.64423 -13.31456 -12.47346 -12.29643 -11.95058 -11.88287 -11.56958 -11.35127 -11.20562 -10.79980 -10.59843 -10.45651 -10.20002 -10.08378 -10.00879 -9.80134 -9.67495 -8.82308 -8.54962 -8.37354 -7.20400 -5.97692 -3.97977 3.35366 3.41151 3.44307 4.46924 4.60034 4.90965 5.07364 5.23526 5.35318 5.45324 5.51067 5.70206 5.77007 5.84226 6.02105 6.07253 6.15703 6.31186 6.46292 6.60420 6.71382 6.77975 6.82733 6.87224 7.08192 7.13241 7.19537 7.46683 7.49933 7.66672 7.89530 8.15326 8.35148 8.65063 9.09553 9.65679 11.11665 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044994 B = 0.008193 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.154629 B = 3416.851929 C = 3781.695226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.202 3.798 3 H 0.006 0.994 4 C -0.503 4.503 5 H 0.061 0.939 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.510 5.510 13 C 0.056 3.944 14 C -0.096 4.096 15 H 0.071 0.929 16 C -0.145 4.145 17 C -0.087 4.087 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.850 5.850 21 C 0.053 3.947 22 H 0.035 0.965 23 H 0.012 0.988 24 H 0.066 0.934 25 H 0.260 0.740 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.337 0.663 34 H 0.336 0.664 35 H 0.068 0.932 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -1.018 12.744 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.095 3.905 3 H 0.024 0.976 4 C -0.541 4.541 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.235 5.235 13 C -0.073 4.073 14 C -0.116 4.116 15 H 0.090 0.910 16 C -0.202 4.202 17 C -0.106 4.106 18 H 0.087 0.913 19 C -0.062 4.062 20 N -0.379 5.379 21 C -0.076 4.076 22 H 0.054 0.946 23 H 0.031 0.969 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.383 -1.241 11.827 12.364 hybrid contribution 0.970 0.137 -0.108 0.986 sum 4.353 -1.104 11.720 12.551 Atomic orbital electron populations 1.21720 0.98118 0.98918 0.99633 1.19397 0.91992 0.92526 0.86582 0.97612 1.21082 1.35171 1.07932 0.89928 0.92110 1.24941 0.95551 0.94672 0.98987 1.69981 1.45479 1.14070 1.23652 0.86601 0.78718 0.80036 0.82574 1.20581 1.21485 1.20016 1.65478 1.04973 1.50704 1.02298 1.22881 0.91003 1.00174 0.93213 1.21966 0.93878 0.99391 0.96364 0.91013 1.21934 0.98047 1.00043 1.00198 1.21930 0.96045 0.96788 0.95868 0.91311 1.22054 0.90033 0.98864 0.95249 1.58663 1.35258 1.12198 1.31784 1.22897 0.97934 0.96532 0.90198 0.94569 0.96886 0.91513 0.93046 0.94518 0.90850 0.93035 0.92584 0.92874 0.95560 0.91001 0.85072 0.85228 0.91318 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.82 37.15 0.33 -2.84 16 2 C 0.20 5.30 1.69 -68.87 -0.12 5.18 16 3 H 0.01 0.18 7.92 -51.93 -0.41 -0.23 16 4 C -0.50 -14.21 8.02 -34.44 -0.28 -14.49 16 5 H 0.06 1.73 7.45 -52.49 -0.39 1.34 16 6 C 0.06 1.70 5.17 -17.82 -0.09 1.60 16 7 N -0.89 -26.26 12.16 55.43 0.67 -25.59 16 8 Si 0.89 21.81 29.55 -169.99 -5.02 16.78 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.51 -11.48 5.19 -223.41 -1.16 -12.64 16 13 C 0.06 1.12 5.37 -2.18 -0.01 1.11 16 14 C -0.10 -1.50 3.65 -89.24 -0.33 -1.83 16 15 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.14 -1.88 7.93 37.16 0.29 -1.59 16 17 C -0.09 -1.34 3.22 -89.24 -0.29 -1.62 16 18 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 19 C 0.07 0.88 4.93 -3.83 -0.02 0.86 16 20 N -0.85 -9.92 9.49 -10.37 -0.10 -10.02 16 21 C 0.05 1.02 4.78 -2.18 -0.01 1.01 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.01 0.28 7.17 -51.93 -0.37 -0.09 16 24 H 0.07 1.81 6.82 -51.93 -0.35 1.46 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.04 0.79 7.59 -51.93 -0.39 0.39 16 27 H 0.07 1.54 7.76 -51.93 -0.40 1.13 16 28 H 0.05 0.57 6.67 -51.93 -0.35 0.23 16 29 H 0.06 0.75 6.90 -51.93 -0.36 0.40 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.30 6.49 -51.93 -0.34 -0.04 16 32 H 0.07 1.01 6.94 -51.93 -0.36 0.65 16 33 H 0.34 3.46 8.99 -39.29 -0.35 3.11 16 34 H 0.34 3.19 9.08 -39.29 -0.36 2.83 16 35 H 0.07 1.35 7.77 -51.93 -0.40 0.94 16 36 H 0.03 0.72 7.58 -51.93 -0.39 0.33 16 LS Contribution 277.28 15.07 4.18 4.18 Total: -1.00 -29.75 277.28 -8.00 -37.75 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.06 Total: 2.14 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.52 Total: -12.60 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.58 Total: -48.25 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.75 -8.00 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708867171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.031 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds