Wall clock time and date at job start Mon Mar 30 2020 02:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47027 * 2 1 4 4 C 1.50698 * 109.47321 * 240.00253 * 2 1 3 5 5 H 1.08002 * 119.99922 * 245.46911 * 4 2 1 6 6 C 1.37882 * 120.00348 * 65.46587 * 4 2 1 7 7 N 1.31520 * 119.99465 * 9.46459 * 6 4 2 8 8 Si 1.86793 * 120.00353 * 189.46235 * 6 4 2 9 9 H 1.48505 * 109.46863 * 84.99694 * 8 6 4 10 10 H 1.48497 * 109.47222 * 204.99159 * 8 6 4 11 11 H 1.48494 * 109.47138 * 324.99794 * 8 6 4 12 12 N 1.46900 * 109.47020 * 120.00096 * 2 1 3 13 13 C 1.48559 * 111.00098 * 184.58160 * 12 2 1 14 14 C 1.54381 * 104.59832 * 159.04166 * 13 12 2 15 15 H 1.08996 * 110.40899 * 95.08520 * 14 13 12 16 16 C 1.53001 * 110.32272 * 217.25513 * 14 13 12 17 17 C 1.54259 * 105.05634 * 336.14705 * 14 13 12 18 18 H 1.09003 * 110.32257 * 118.89477 * 17 14 13 19 19 C 1.52994 * 110.32503 * 241.00072 * 17 14 13 20 20 N 1.46897 * 109.47231 * 185.00077 * 19 17 14 21 21 C 1.48557 * 110.99965 * 300.00113 * 12 2 1 22 22 H 1.09005 * 109.47079 * 184.26508 * 1 2 3 23 23 H 1.08996 * 109.47581 * 304.26979 * 1 2 3 24 24 H 1.08998 * 109.47014 * 64.27107 * 1 2 3 25 25 H 0.96996 * 119.99687 * 180.02562 * 7 6 4 26 26 H 1.09005 * 110.40986 * 40.25876 * 13 12 2 27 27 H 1.09004 * 110.41347 * 277.82509 * 13 12 2 28 28 H 1.09007 * 109.46622 * 175.63675 * 16 14 13 29 29 H 1.08994 * 109.47443 * 55.63663 * 16 14 13 30 30 H 1.09000 * 109.46703 * 295.63119 * 16 14 13 31 31 H 1.08998 * 109.47498 * 305.00378 * 19 17 14 32 32 H 1.09002 * 109.47274 * 65.00476 * 19 17 14 33 33 H 1.00900 * 111.00040 * 56.05038 * 20 19 17 34 34 H 1.00900 * 111.00232 * 179.97438 * 20 19 17 35 35 H 1.08993 * 110.41089 * 82.18222 * 21 12 2 36 36 H 1.09002 * 110.41210 * 319.73623 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5785 -1.6371 -1.1338 6 6 1.7947 -0.1772 -2.4797 7 7 1.2978 1.0351 -2.5935 8 14 2.1787 -1.1768 -4.0102 9 1 1.0281 -2.0612 -4.3253 10 1 2.4248 -0.2594 -5.1517 11 1 3.3881 -2.0044 -3.7705 12 7 2.0196 -0.6925 1.1994 13 6 3.5005 -0.6172 1.2905 14 6 3.8123 -0.8749 2.7803 15 1 4.0398 -1.9281 2.9443 16 6 4.9828 -0.0018 3.2370 17 6 2.5247 -0.4813 3.5332 18 1 2.1193 -1.3419 4.0653 19 6 2.8086 0.6611 4.5104 20 7 1.6025 0.9402 5.3011 21 6 1.5432 -0.0189 2.4348 22 1 -0.3633 -1.0249 0.0764 23 1 -0.3634 0.5786 0.8492 24 1 -0.3633 0.4461 -0.9258 25 1 1.1302 1.4101 -3.4722 26 1 3.8497 0.3721 0.9945 27 1 3.9592 -1.3851 0.6676 28 1 5.1411 -0.1370 4.3070 29 1 4.7570 1.0447 3.0325 30 1 5.8843 -0.2913 2.6970 31 1 3.6221 0.3753 5.1772 32 1 3.0923 1.5539 3.9531 33 1 1.2819 0.1102 5.7769 34 1 1.7646 1.6914 5.9550 35 1 0.5283 -0.3365 2.6737 36 1 1.5861 1.0640 2.3181 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708867171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:25 Heat of formation + Delta-G solvation = -27.080370 kcal Electronic energy + Delta-G solvation = -14940.830924 eV Core-core repulsion = 12651.343706 eV Total energy + Delta-G solvation = -2289.487219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45361 -36.78653 -34.81886 -33.57610 -30.91145 -29.88165 -27.31197 -26.16509 -25.02734 -22.83087 -21.31656 -19.80900 -18.35656 -17.47006 -16.72804 -16.23113 -15.74494 -15.59153 -15.19887 -15.01895 -14.15701 -13.67770 -13.47328 -13.27115 -13.14097 -12.92719 -12.88068 -12.64560 -12.59679 -12.29420 -12.01631 -11.62716 -11.52684 -11.42269 -11.15102 -10.91652 -10.55556 -9.45215 -9.08455 -8.16086 -6.24585 1.40078 1.42326 1.51540 2.41463 3.14097 3.42170 3.58998 3.75651 4.00677 4.16885 4.30683 4.55054 4.58857 4.66876 4.67372 4.74962 4.80826 4.86322 4.94965 4.97472 5.06943 5.09481 5.23167 5.28882 5.37855 5.41239 5.51789 5.68096 5.69649 6.15698 6.30250 6.35597 6.64496 6.71524 6.90185 7.43836 8.93057 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044994 B = 0.008193 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.154629 B = 3416.851929 C = 3781.695226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.207 3.793 3 H -0.036 1.036 4 C -0.520 4.520 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.520 5.520 13 C 0.053 3.947 14 C -0.087 4.087 15 H 0.086 0.914 16 C -0.139 4.139 17 C -0.078 4.078 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.862 5.862 21 C 0.055 3.945 22 H 0.039 0.961 23 H 0.028 0.972 24 H 0.042 0.958 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.347 0.653 34 H 0.350 0.650 35 H 0.065 0.935 36 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -2.100 14.173 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 H -0.019 1.019 4 C -0.559 4.559 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.244 5.244 13 C -0.076 4.076 14 C -0.107 4.107 15 H 0.104 0.896 16 C -0.196 4.196 17 C -0.098 4.098 18 H 0.102 0.898 19 C -0.054 4.054 20 N -0.394 5.394 21 C -0.074 4.074 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.084 0.916 36 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 4.143 -2.327 13.285 14.109 hybrid contribution 0.715 0.498 -0.529 1.019 sum 4.858 -1.829 12.756 13.772 Atomic orbital electron populations 1.21542 0.97529 0.99046 0.99005 1.19180 0.92430 0.90353 0.88053 1.01850 1.21326 1.35524 1.07838 0.91189 0.92742 1.25756 0.95312 0.95571 1.02066 1.70103 1.46229 1.15462 1.24461 0.85548 0.78806 0.78563 0.78605 1.19854 1.20868 1.19274 1.65393 1.06580 1.50308 1.02128 1.22913 0.89465 0.98440 0.96732 1.21928 0.95161 1.00919 0.92643 0.89560 1.21894 0.96861 0.98802 1.02083 1.21900 0.94545 0.98265 0.95041 0.89814 1.21892 0.91352 0.97069 0.95074 1.58586 1.34888 1.13323 1.32571 1.22904 0.99051 0.95108 0.90301 0.94186 0.95280 0.93937 0.92879 0.96747 0.92238 0.90022 0.93483 0.92345 0.92778 0.92565 0.83940 0.83673 0.91610 0.96741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.83 8.82 71.98 0.64 -5.20 16 2 C 0.21 11.28 1.69 44.17 0.07 11.35 16 3 H -0.04 -2.22 7.92 -2.39 -0.02 -2.24 16 4 C -0.52 -30.15 8.02 25.60 0.21 -29.94 16 5 H 0.05 3.15 7.45 -2.91 -0.02 3.13 16 6 C 0.01 0.67 5.17 84.65 0.44 1.11 16 7 N -0.92 -55.58 12.16 21.45 0.26 -55.32 16 8 Si 0.96 45.05 29.55 68.60 2.03 47.08 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 N -0.52 -23.79 5.19 -860.73 -4.47 -28.25 16 13 C 0.05 2.16 5.37 86.45 0.46 2.63 16 14 C -0.09 -2.55 3.65 -9.90 -0.04 -2.59 16 15 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.14 -3.25 7.93 71.98 0.57 -2.68 16 17 C -0.08 -2.24 3.22 -9.90 -0.03 -2.27 16 18 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 19 C 0.08 1.77 4.93 86.30 0.43 2.20 16 20 N -0.86 -17.92 9.49 -186.73 -1.77 -19.69 16 21 C 0.05 2.10 4.78 86.45 0.41 2.52 16 22 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 23 H 0.03 1.35 7.17 -2.39 -0.02 1.33 16 24 H 0.04 2.36 6.82 -2.39 -0.02 2.35 16 25 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 26 H 0.01 0.64 7.59 -2.38 -0.02 0.62 16 27 H 0.06 2.54 7.76 -2.38 -0.02 2.52 16 28 H 0.08 1.45 6.67 -2.38 -0.02 1.44 16 29 H 0.05 1.19 6.90 -2.39 -0.02 1.18 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 0.98 6.49 -2.39 -0.02 0.97 16 32 H 0.06 1.50 6.94 -2.39 -0.02 1.48 16 33 H 0.35 6.08 8.99 -89.69 -0.81 5.27 16 34 H 0.35 5.72 9.08 -89.69 -0.81 4.90 16 35 H 0.07 2.55 7.77 -2.39 -0.02 2.53 16 36 H 0.01 0.61 7.58 -2.39 -0.02 0.59 16 Total: -1.00 -65.25 277.28 -1.35 -66.60 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -0.56 Total: 12.45 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 3.16 Total: -22.87 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -5.98 Total: -103.26 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.25 -1.35 -66.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708867171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.524 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds