Wall clock time and date at job start Mon Mar 30 2020 02:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47299 * 2 1 4 4 C 1.50696 * 109.47400 * 120.00028 * 2 1 3 5 5 H 1.08002 * 120.00118 * 95.00579 * 4 2 1 6 6 C 1.37876 * 120.00016 * 275.01113 * 4 2 1 7 7 N 1.31508 * 120.00104 * 6.95108 * 6 4 2 8 8 Si 1.86807 * 120.00019 * 186.94949 * 6 4 2 9 9 H 1.48495 * 109.47263 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.46796 * 60.00008 * 8 6 4 11 11 H 1.48502 * 109.47124 * 300.00097 * 8 6 4 12 12 N 1.46901 * 109.47161 * 240.00316 * 2 1 3 13 13 C 1.48538 * 111.00126 * 184.39918 * 12 2 1 14 14 C 1.54936 * 103.22757 * 159.72033 * 13 12 2 15 15 H 1.08996 * 110.87792 * 81.01426 * 14 13 12 16 16 C 1.53004 * 110.72185 * 204.22659 * 14 13 12 17 17 N 1.46891 * 109.47410 * 288.49972 * 16 14 13 18 18 C 1.54591 * 102.91979 * 322.58428 * 14 13 12 19 19 H 1.09006 * 110.31095 * 263.04183 * 18 14 13 20 20 C 1.53000 * 110.39392 * 140.92044 * 18 14 13 21 21 C 1.47897 * 111.00129 * 301.79273 * 12 2 1 22 22 H 1.08996 * 109.47343 * 297.49453 * 1 2 3 23 23 H 1.09002 * 109.47199 * 57.49667 * 1 2 3 24 24 H 1.09005 * 109.47298 * 177.49602 * 1 2 3 25 25 H 0.96999 * 119.99746 * 355.16677 * 7 6 4 26 26 H 1.08997 * 110.66524 * 278.15583 * 13 12 2 27 27 H 1.09003 * 110.66461 * 41.28373 * 13 12 2 28 28 H 1.08999 * 109.47098 * 48.50203 * 16 14 13 29 29 H 1.09001 * 109.46879 * 168.49974 * 16 14 13 30 30 H 1.00899 * 111.00171 * 179.97438 * 17 16 14 31 31 H 1.00896 * 111.00159 * 303.95797 * 17 16 14 32 32 H 1.09007 * 109.46927 * 302.78337 * 20 18 14 33 33 H 1.08999 * 109.46954 * 62.77625 * 20 18 14 34 34 H 1.08999 * 109.47360 * 182.78105 * 20 18 14 35 35 H 1.09004 * 109.91843 * 333.51399 * 21 12 2 36 36 H 1.09005 * 109.91941 * 94.60265 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.2893 -1.7583 1.1819 6 6 2.1638 -0.0226 2.4181 7 7 1.7241 1.2130 2.5146 8 14 2.9665 -0.8460 3.8903 9 1 2.9866 0.0987 5.0359 10 1 4.3578 -1.2325 3.5436 11 1 2.1938 -2.0586 4.2615 12 7 2.0196 -0.6924 -1.1995 13 6 3.5006 -0.8051 -1.1818 14 6 3.7799 -1.9632 -2.1724 15 1 3.7530 -1.6081 -3.2026 16 6 5.1242 -2.6260 -1.8652 17 7 6.2156 -1.7194 -2.2456 18 6 2.6132 -2.9401 -1.8999 19 1 2.9299 -3.7255 -1.2135 20 6 2.1125 -3.5513 -3.2100 21 6 1.5104 -2.0799 -1.2556 22 1 -0.3634 0.4744 0.9115 23 1 -0.3634 0.5522 -0.8667 24 1 -0.3634 -1.0267 -0.0449 25 1 1.3714 1.6647 1.7321 26 1 3.9608 0.1192 -1.5309 27 1 3.8552 -1.0592 -0.1829 28 1 5.1871 -2.8429 -0.7988 29 1 5.2092 -3.5542 -2.4304 30 1 7.1146 -2.1345 -2.0519 31 1 6.1419 -1.4518 -3.2156 32 1 1.8101 -2.7550 -3.8903 33 1 2.9112 -4.1356 -3.6670 34 1 1.2595 -4.1986 -3.0064 35 1 1.3001 -2.4393 -0.2482 36 1 0.6042 -2.1188 -1.8601 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708867173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:28 Heat of formation + Delta-G solvation = -12.883482 kcal Electronic energy + Delta-G solvation = -15127.423996 eV Core-core repulsion = 12838.552401 eV Total energy + Delta-G solvation = -2288.871595 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.86066 -35.24619 -33.47431 -31.67787 -29.57203 -27.72180 -25.51996 -24.56484 -23.26290 -20.98073 -19.84615 -19.02992 -16.66408 -15.72950 -15.35199 -14.36512 -14.14029 -13.72126 -13.61131 -13.24530 -12.80831 -12.67229 -12.10984 -11.85647 -11.43358 -11.24181 -10.92596 -10.86746 -10.66155 -10.26206 -10.17349 -10.10539 -10.01086 -9.87676 -9.68901 -8.92851 -8.49154 -8.31409 -7.03707 -6.32051 -4.05710 3.42567 3.44805 3.62784 4.53575 4.64661 5.00972 5.19246 5.26465 5.37559 5.46103 5.59512 5.67062 5.82455 5.97866 6.01871 6.17054 6.28502 6.34765 6.51666 6.56974 6.67858 6.76180 6.83601 6.88153 6.96138 7.11596 7.26404 7.34738 7.39569 7.55372 7.98476 8.15259 8.30353 8.59601 8.86060 9.67299 11.03876 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027302 B = 0.010948 C = 0.009173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.309707 B = 2557.028617 C = 3051.574187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.180 3.820 3 H 0.040 0.960 4 C -0.616 4.616 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.909 5.909 8 Si 1.061 2.939 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.290 1.290 12 N -0.519 5.519 13 C 0.061 3.939 14 C -0.086 4.086 15 H 0.070 0.930 16 C 0.072 3.928 17 N -0.846 5.846 18 C -0.099 4.099 19 H 0.066 0.934 20 C -0.136 4.136 21 C 0.045 3.955 22 H 0.048 0.952 23 H 0.022 0.978 24 H 0.036 0.964 25 H 0.271 0.729 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.019 0.981 30 H 0.336 0.664 31 H 0.337 0.663 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.386 -8.145 -9.103 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.073 3.927 3 H 0.058 0.942 4 C -0.655 4.655 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.545 5.545 8 Si 0.890 3.110 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.216 1.216 12 N -0.243 5.243 13 C -0.067 4.067 14 C -0.105 4.105 15 H 0.088 0.912 16 C -0.058 4.058 17 N -0.375 5.375 18 C -0.119 4.119 19 H 0.084 0.916 20 C -0.194 4.194 21 C -0.083 4.083 22 H 0.067 0.933 23 H 0.041 0.959 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.037 0.963 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.245 -7.102 -7.384 11.089 hybrid contribution 0.119 -1.514 -1.494 2.131 sum 4.364 -8.616 -8.878 13.119 Atomic orbital electron populations 1.21869 0.98765 0.99339 0.98784 1.19525 0.91377 0.95101 0.86742 0.94247 1.22366 1.48257 0.97902 0.97016 0.93127 1.25696 0.95129 0.96257 1.00931 1.70785 1.38173 1.12788 1.32713 0.83655 0.76215 0.75202 0.75943 1.20790 1.21456 1.21643 1.65136 1.06050 1.13154 1.39961 1.22950 0.89312 0.96324 0.98075 1.22153 0.92201 0.96217 0.99974 0.91184 1.21836 0.90964 0.92462 1.00587 1.58616 1.05197 1.46968 1.26751 1.22004 0.95914 0.97273 0.96668 0.91584 1.21800 1.00126 1.00225 0.97215 1.22761 0.96112 0.89893 0.99575 0.93267 0.95886 0.94524 0.91734 0.91890 0.91714 0.90958 0.96328 0.85214 0.85145 0.92545 0.93615 0.93079 0.92584 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.97 37.15 0.33 -2.75 16 2 C 0.18 4.58 2.12 -68.87 -0.15 4.44 16 3 H 0.04 1.11 7.01 -51.93 -0.36 0.75 16 4 C -0.62 -16.87 5.97 -34.44 -0.21 -17.07 16 5 H 0.05 1.40 6.32 -52.49 -0.33 1.07 16 6 C 0.03 0.72 5.45 -17.82 -0.10 0.62 16 7 N -0.91 -27.27 13.59 55.43 0.75 -26.52 16 8 Si 1.06 25.29 29.91 -169.99 -5.08 20.21 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.52 -11.59 5.34 -223.89 -1.20 -12.78 16 13 C 0.06 1.29 5.74 -1.90 -0.01 1.28 16 14 C -0.09 -1.42 2.77 -88.76 -0.25 -1.66 16 15 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 16 C 0.07 1.04 6.10 -3.83 -0.02 1.02 16 17 N -0.85 -11.00 9.54 -10.37 -0.10 -11.10 16 18 C -0.10 -1.62 3.16 -89.27 -0.28 -1.90 16 19 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 20 C -0.14 -1.83 8.90 37.16 0.33 -1.50 16 21 C 0.05 0.90 4.67 -2.76 -0.01 0.89 16 22 H 0.05 1.24 7.67 -51.93 -0.40 0.84 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.04 0.83 6.86 -51.93 -0.36 0.48 16 25 H 0.27 8.13 6.29 -40.82 -0.26 7.87 16 26 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.06 1.54 6.24 -51.93 -0.32 1.22 16 28 H 0.07 1.15 7.99 -51.93 -0.42 0.73 16 29 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.34 3.61 9.08 -39.29 -0.36 3.25 16 31 H 0.34 3.84 8.99 -39.29 -0.35 3.49 16 32 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.25 5.72 -51.93 -0.30 0.95 16 36 H 0.06 1.09 7.68 -51.93 -0.40 0.69 16 LS Contribution 277.94 15.07 4.19 4.19 Total: -1.00 -29.48 277.94 -7.80 -37.28 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.00 Total: 5.38 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -0.36 Total: -16.65 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.54 Total: -50.40 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.48 -7.80 -37.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708867173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.396 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds