Wall clock time and date at job start Mon Mar 30 2020 02:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46912 * 2 1 4 4 C 1.50694 * 109.46995 * 240.00482 * 2 1 3 5 5 H 1.07998 * 120.00332 * 268.26790 * 4 2 1 6 6 C 1.37875 * 120.00204 * 88.26723 * 4 2 1 7 7 N 1.31512 * 120.00121 * 353.45125 * 6 4 2 8 8 Si 1.86806 * 120.00215 * 173.45544 * 6 4 2 9 9 H 1.48493 * 109.47350 * 90.00011 * 8 6 4 10 10 H 1.48499 * 109.46997 * 329.99636 * 8 6 4 11 11 H 1.48500 * 109.47058 * 210.00168 * 8 6 4 12 12 N 1.46897 * 109.47284 * 120.00382 * 2 1 3 13 13 C 1.47908 * 110.99786 * 294.99942 * 12 2 1 14 14 C 1.53994 * 107.05614 * 214.15561 * 13 12 2 15 15 H 1.08996 * 110.30606 * 120.14359 * 14 13 12 16 16 C 1.53000 * 110.30864 * 242.31248 * 14 13 12 17 17 N 1.46905 * 109.46877 * 293.54376 * 16 14 13 18 18 C 1.54601 * 105.14114 * 1.22512 * 14 13 12 19 19 H 1.08995 * 110.72503 * 263.60229 * 18 14 13 20 20 C 1.52993 * 110.72209 * 140.49082 * 18 14 13 21 21 C 1.48533 * 111.00160 * 177.60648 * 12 2 1 22 22 H 1.09007 * 109.47491 * 306.60360 * 1 2 3 23 23 H 1.08999 * 109.47753 * 66.60291 * 1 2 3 24 24 H 1.09007 * 109.47185 * 186.60805 * 1 2 3 25 25 H 0.97005 * 120.00147 * 354.84847 * 7 6 4 26 26 H 1.08996 * 109.91647 * 333.51057 * 13 12 2 27 27 H 1.08998 * 109.91249 * 94.61003 * 13 12 2 28 28 H 1.08995 * 109.47574 * 53.54533 * 16 14 13 29 29 H 1.09005 * 109.46940 * 173.54765 * 16 14 13 30 30 H 1.00900 * 110.99851 * 180.02562 * 17 16 14 31 31 H 1.00899 * 110.99884 * 303.95764 * 17 16 14 32 32 H 1.08999 * 109.47517 * 60.00241 * 20 18 14 33 33 H 1.09002 * 109.47013 * 179.97438 * 20 18 14 34 34 H 1.09001 * 109.47835 * 299.99967 * 20 18 14 35 35 H 1.09005 * 110.66185 * 278.15615 * 21 12 2 36 36 H 1.09001 * 110.66453 * 41.27662 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.2389 -1.7697 -1.1959 6 6 2.2280 -0.0076 -2.4005 7 7 1.8563 1.2512 -2.4816 8 14 3.0212 -0.8437 -3.8707 9 1 1.9691 -1.4672 -4.7128 10 1 3.9612 -1.8911 -3.3967 11 1 3.7642 0.1626 -4.6710 12 7 2.0197 -0.6926 1.1993 13 6 1.6462 0.0441 2.4264 14 6 2.7915 -0.1517 3.4370 15 1 3.2198 0.8114 3.7145 16 6 2.2836 -0.8861 4.6794 17 7 1.3277 -0.0318 5.3966 18 6 3.8408 -1.0123 2.6964 19 1 3.7219 -2.0663 2.9476 20 6 5.2581 -0.5367 3.0217 21 6 3.5034 -0.7627 1.2051 22 1 -0.3634 0.6128 0.8250 23 1 -0.3634 0.4081 -0.9431 24 1 -0.3634 -1.0209 0.1183 25 1 1.3774 1.6639 -1.7458 26 1 1.5266 1.1038 2.2013 27 1 0.7170 -0.3566 2.8315 28 1 1.7905 -1.8105 4.3789 29 1 3.1244 -1.1187 5.3330 30 1 0.9777 -0.4946 6.2221 31 1 1.7421 0.8581 5.6296 32 1 5.4310 -0.6171 4.0949 33 1 5.9803 -1.1566 2.4904 34 1 5.3729 0.5020 2.7120 35 1 3.8516 -1.5910 0.5879 36 1 3.9343 0.1791 0.8654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708867175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:31 Heat of formation + Delta-G solvation = -14.220735 kcal Electronic energy + Delta-G solvation = -14942.116171 eV Core-core repulsion = 12653.186588 eV Total energy + Delta-G solvation = -2288.929583 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.87038 -35.22339 -33.56188 -31.87371 -29.22988 -28.36407 -25.41774 -24.47633 -23.35921 -20.87164 -19.94074 -19.07950 -16.77304 -15.90277 -15.04439 -14.69964 -14.39808 -13.73103 -13.68341 -13.19222 -12.87864 -12.62506 -12.09142 -11.93491 -11.55143 -11.19545 -11.09751 -10.84961 -10.67167 -10.38922 -10.28583 -10.13862 -10.08369 -10.00295 -9.86940 -8.64395 -8.50890 -8.24801 -7.24225 -6.31101 -4.01525 3.46073 3.49110 3.65219 4.52917 4.56642 4.93730 5.05433 5.17985 5.22283 5.43314 5.53275 5.66801 5.74069 5.89967 5.92249 6.06775 6.13058 6.28197 6.42145 6.50716 6.56381 6.71559 6.75699 6.81756 6.86532 6.97121 7.12822 7.14207 7.42526 7.48466 7.89465 8.13455 8.42919 8.67387 8.93245 9.70900 11.06174 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039667 B = 0.008714 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.704623 B = 3212.398358 C = 3678.494325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.187 3.813 3 H 0.003 0.997 4 C -0.581 4.581 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 1.068 2.932 9 H -0.289 1.289 10 H -0.288 1.288 11 H -0.285 1.285 12 N -0.512 5.512 13 C 0.050 3.950 14 C -0.092 4.092 15 H 0.064 0.936 16 C 0.074 3.926 17 N -0.849 5.849 18 C -0.098 4.098 19 H 0.076 0.924 20 C -0.139 4.139 21 C 0.066 3.934 22 H 0.016 0.984 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.269 0.731 26 H 0.027 0.973 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.020 0.980 30 H 0.337 0.663 31 H 0.337 0.663 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -2.789 12.758 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.080 3.920 3 H 0.020 0.980 4 C -0.620 4.620 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.552 5.552 8 Si 0.897 3.103 9 H -0.215 1.215 10 H -0.215 1.215 11 H -0.211 1.211 12 N -0.237 5.237 13 C -0.078 4.078 14 C -0.112 4.112 15 H 0.082 0.918 16 C -0.056 4.056 17 N -0.378 5.378 18 C -0.117 4.117 19 H 0.095 0.905 20 C -0.197 4.197 21 C -0.062 4.062 22 H 0.035 0.965 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.372 -3.081 10.515 11.464 hybrid contribution 0.386 0.594 2.326 2.432 sum 3.758 -2.487 12.841 13.609 Atomic orbital electron populations 1.21851 0.98539 0.99582 0.98619 1.19600 0.91645 0.92509 0.88258 0.97953 1.21883 1.47770 0.96961 0.95392 0.92665 1.25805 0.96272 0.95733 1.00767 1.70755 1.36829 1.12440 1.35130 0.83564 0.76407 0.75043 0.75298 1.21530 1.21462 1.21083 1.64863 1.08519 1.48302 1.01995 1.22761 0.97638 0.96333 0.91081 1.22088 0.96129 0.98098 0.94843 0.91772 1.21843 0.93065 0.96494 0.94224 1.58675 1.41635 1.07416 1.30049 1.22183 0.93434 0.99426 0.96694 0.90549 1.21750 0.96396 1.01212 1.00346 1.22885 0.89735 1.00547 0.93019 0.96501 0.93332 0.93675 0.91985 0.95446 0.90647 0.90651 0.96186 0.85137 0.85137 0.93361 0.92572 0.92865 0.90533 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.91 37.16 0.33 -2.78 16 2 C 0.19 4.86 1.40 -68.87 -0.10 4.76 16 3 H 0.00 0.08 6.79 -51.93 -0.35 -0.27 16 4 C -0.58 -16.48 7.47 -34.44 -0.26 -16.74 16 5 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 6 C 0.02 0.52 5.45 -17.82 -0.10 0.42 16 7 N -0.92 -27.83 13.56 55.43 0.75 -27.08 16 8 Si 1.07 25.50 29.91 -169.99 -5.08 20.42 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.51 -11.58 5.10 -223.89 -1.14 -12.72 16 13 C 0.05 0.98 5.15 -2.75 -0.01 0.96 16 14 C -0.09 -1.43 2.76 -89.26 -0.25 -1.68 16 15 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 16 C 0.07 0.97 5.86 -3.82 -0.02 0.95 16 17 N -0.85 -9.90 9.32 -10.37 -0.10 -10.00 16 18 C -0.10 -1.56 3.19 -88.76 -0.28 -1.84 16 19 H 0.08 1.19 7.86 -51.93 -0.41 0.78 16 20 C -0.14 -1.86 9.17 37.15 0.34 -1.52 16 21 C 0.07 1.37 5.16 -1.90 -0.01 1.36 16 22 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 23 H 0.05 1.24 7.80 -51.93 -0.41 0.83 16 24 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.27 8.20 6.46 -40.82 -0.26 7.94 16 26 H 0.03 0.57 7.65 -51.93 -0.40 0.17 16 27 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.34 3.16 9.08 -39.29 -0.36 2.81 16 31 H 0.34 3.51 8.99 -39.29 -0.35 3.16 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.08 1.66 7.95 -51.93 -0.41 1.25 16 36 H 0.04 0.80 7.91 -51.93 -0.41 0.39 16 LS Contribution 283.88 15.07 4.28 4.28 Total: -1.00 -30.39 283.88 -7.94 -38.34 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.30 Total: 2.86 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.35 Total: -16.10 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.49 Total: -49.80 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.39 -7.94 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708867175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.117 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds