Wall clock time and date at job start Mon Mar 30 2020 02:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46912 * 2 1 4 4 C 1.50694 * 109.46995 * 240.00482 * 2 1 3 5 5 H 1.07998 * 120.00332 * 268.26790 * 4 2 1 6 6 C 1.37875 * 120.00204 * 88.26723 * 4 2 1 7 7 N 1.31512 * 120.00121 * 353.45125 * 6 4 2 8 8 Si 1.86806 * 120.00215 * 173.45544 * 6 4 2 9 9 H 1.48493 * 109.47350 * 90.00011 * 8 6 4 10 10 H 1.48499 * 109.46997 * 329.99636 * 8 6 4 11 11 H 1.48500 * 109.47058 * 210.00168 * 8 6 4 12 12 N 1.46897 * 109.47284 * 120.00382 * 2 1 3 13 13 C 1.47908 * 110.99786 * 294.99942 * 12 2 1 14 14 C 1.53994 * 107.05614 * 214.15561 * 13 12 2 15 15 H 1.08996 * 110.30606 * 120.14359 * 14 13 12 16 16 C 1.53000 * 110.30864 * 242.31248 * 14 13 12 17 17 N 1.46905 * 109.46877 * 293.54376 * 16 14 13 18 18 C 1.54601 * 105.14114 * 1.22512 * 14 13 12 19 19 H 1.08995 * 110.72503 * 263.60229 * 18 14 13 20 20 C 1.52993 * 110.72209 * 140.49082 * 18 14 13 21 21 C 1.48533 * 111.00160 * 177.60648 * 12 2 1 22 22 H 1.09007 * 109.47491 * 306.60360 * 1 2 3 23 23 H 1.08999 * 109.47753 * 66.60291 * 1 2 3 24 24 H 1.09007 * 109.47185 * 186.60805 * 1 2 3 25 25 H 0.97005 * 120.00147 * 354.84847 * 7 6 4 26 26 H 1.08996 * 109.91647 * 333.51057 * 13 12 2 27 27 H 1.08998 * 109.91249 * 94.61003 * 13 12 2 28 28 H 1.08995 * 109.47574 * 53.54533 * 16 14 13 29 29 H 1.09005 * 109.46940 * 173.54765 * 16 14 13 30 30 H 1.00900 * 110.99851 * 180.02562 * 17 16 14 31 31 H 1.00899 * 110.99884 * 303.95764 * 17 16 14 32 32 H 1.08999 * 109.47517 * 60.00241 * 20 18 14 33 33 H 1.09002 * 109.47013 * 179.97438 * 20 18 14 34 34 H 1.09001 * 109.47835 * 299.99967 * 20 18 14 35 35 H 1.09005 * 110.66185 * 278.15615 * 21 12 2 36 36 H 1.09001 * 110.66453 * 41.27662 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.2389 -1.7697 -1.1959 6 6 2.2280 -0.0076 -2.4005 7 7 1.8563 1.2512 -2.4816 8 14 3.0212 -0.8437 -3.8707 9 1 1.9691 -1.4672 -4.7128 10 1 3.9612 -1.8911 -3.3967 11 1 3.7642 0.1626 -4.6710 12 7 2.0197 -0.6926 1.1993 13 6 1.6462 0.0441 2.4264 14 6 2.7915 -0.1517 3.4370 15 1 3.2198 0.8114 3.7145 16 6 2.2836 -0.8861 4.6794 17 7 1.3277 -0.0318 5.3966 18 6 3.8408 -1.0123 2.6964 19 1 3.7219 -2.0663 2.9476 20 6 5.2581 -0.5367 3.0217 21 6 3.5034 -0.7627 1.2051 22 1 -0.3634 0.6128 0.8250 23 1 -0.3634 0.4081 -0.9431 24 1 -0.3634 -1.0209 0.1183 25 1 1.3774 1.6639 -1.7458 26 1 1.5266 1.1038 2.2013 27 1 0.7170 -0.3566 2.8315 28 1 1.7905 -1.8105 4.3789 29 1 3.1244 -1.1187 5.3330 30 1 0.9777 -0.4946 6.2221 31 1 1.7421 0.8581 5.6296 32 1 5.4310 -0.6171 4.0949 33 1 5.9803 -1.1566 2.4904 34 1 5.3729 0.5020 2.7120 35 1 3.8516 -1.5910 0.5879 36 1 3.9343 0.1791 0.8654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708867175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:30 Heat of formation + Delta-G solvation = -36.817915 kcal Electronic energy + Delta-G solvation = -14943.096058 eV Core-core repulsion = 12653.186588 eV Total energy + Delta-G solvation = -2289.909470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41958 -36.88924 -34.98495 -33.64819 -30.87818 -29.93800 -27.12794 -26.27603 -24.86429 -22.50308 -21.59119 -20.57571 -18.88099 -17.21675 -16.46436 -16.35481 -15.63996 -15.50631 -15.16252 -14.86862 -14.40728 -13.92994 -13.65937 -13.49643 -13.25254 -13.10836 -12.66998 -12.59249 -12.48731 -12.09375 -11.98062 -11.89892 -11.63753 -11.49669 -11.35072 -10.68132 -10.42182 -9.53383 -9.13772 -8.62171 -6.33441 1.51612 1.60135 1.78331 2.55637 3.13039 3.36975 3.53041 3.71422 3.84887 4.07839 4.31810 4.44987 4.50155 4.53291 4.62933 4.68788 4.69718 4.74547 4.80861 4.92334 4.93054 5.07788 5.11170 5.14522 5.22891 5.30930 5.41752 5.52207 5.91763 6.01848 6.26743 6.37413 6.49097 6.66385 6.71229 7.47374 8.74811 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039667 B = 0.008714 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.704623 B = 3212.398358 C = 3678.494325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.189 3.811 3 H -0.033 1.033 4 C -0.588 4.588 5 H 0.046 0.954 6 C -0.031 4.031 7 N -0.939 5.939 8 Si 1.115 2.885 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.283 1.283 12 N -0.521 5.521 13 C 0.053 3.947 14 C -0.084 4.084 15 H 0.073 0.927 16 C 0.084 3.916 17 N -0.860 5.860 18 C -0.085 4.085 19 H 0.088 0.912 20 C -0.134 4.134 21 C 0.062 3.938 22 H 0.034 0.966 23 H 0.028 0.972 24 H 0.048 0.952 25 H 0.256 0.744 26 H 0.007 0.993 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.352 0.648 31 H 0.345 0.655 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -3.933 14.347 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.081 3.919 3 H -0.015 1.015 4 C -0.627 4.627 5 H 0.065 0.935 6 C -0.229 4.229 7 N -0.576 5.576 8 Si 0.937 3.063 9 H -0.199 1.199 10 H -0.196 1.196 11 H -0.209 1.209 12 N -0.245 5.245 13 C -0.075 4.075 14 C -0.103 4.103 15 H 0.091 0.909 16 C -0.047 4.047 17 N -0.391 5.391 18 C -0.105 4.105 19 H 0.106 0.894 20 C -0.191 4.191 21 C -0.066 4.066 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.025 0.975 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 4.230 -4.234 12.146 13.540 hybrid contribution 0.079 0.959 1.886 2.118 sum 4.308 -3.275 14.032 15.040 Atomic orbital electron populations 1.21675 0.97464 0.99920 0.98302 1.19453 0.92463 0.90601 0.89372 1.01529 1.22110 1.47489 0.96601 0.96496 0.93526 1.27248 0.96240 0.95598 1.03792 1.70879 1.38322 1.13553 1.34867 0.82970 0.76299 0.74628 0.72424 1.19945 1.19619 1.20878 1.64771 1.09810 1.48087 1.01856 1.22768 0.99428 0.94593 0.90749 1.22049 0.94353 0.98992 0.94937 0.90908 1.21672 0.94080 0.95634 0.93344 1.58600 1.41569 1.07906 1.31053 1.22125 0.95311 1.00330 0.92684 0.89394 1.21717 0.94418 1.00642 1.02370 1.22908 0.88492 0.98555 0.96624 0.94663 0.95268 0.93292 0.93434 0.97461 0.90679 0.91642 0.93556 0.83461 0.84219 0.90358 0.91917 0.93725 0.92102 0.97233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.91 71.98 0.64 -5.10 16 2 C 0.19 10.14 1.40 44.17 0.06 10.20 16 3 H -0.03 -1.97 6.79 -2.39 -0.02 -1.99 16 4 C -0.59 -34.12 7.47 25.60 0.19 -33.93 16 5 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 6 C -0.03 -1.81 5.45 84.65 0.46 -1.35 16 7 N -0.94 -58.65 13.56 21.45 0.29 -58.36 16 8 Si 1.11 51.42 29.91 68.60 2.05 53.47 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 N -0.52 -23.83 5.10 -862.25 -4.40 -28.23 16 13 C 0.05 2.03 5.15 86.45 0.45 2.48 16 14 C -0.08 -2.44 2.76 -9.91 -0.03 -2.47 16 15 H 0.07 2.02 7.85 -2.39 -0.02 2.00 16 16 C 0.08 1.90 5.86 86.30 0.51 2.41 16 17 N -0.86 -17.60 9.32 -186.71 -1.74 -19.34 16 18 C -0.08 -2.54 3.19 -9.59 -0.03 -2.57 16 19 H 0.09 2.48 7.86 -2.39 -0.02 2.46 16 20 C -0.13 -3.20 9.17 71.98 0.66 -2.54 16 21 C 0.06 2.61 5.16 86.65 0.45 3.06 16 22 H 0.03 1.57 7.57 -2.38 -0.02 1.55 16 23 H 0.03 1.52 7.80 -2.39 -0.02 1.50 16 24 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 25 H 0.26 16.27 6.46 -92.70 -0.60 15.67 16 26 H 0.01 0.30 7.65 -2.39 -0.02 0.28 16 27 H 0.07 2.89 7.58 -2.39 -0.02 2.87 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.35 5.52 9.08 -89.69 -0.81 4.71 16 31 H 0.34 6.20 8.99 -89.69 -0.81 5.39 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.14 8.11 -2.39 -0.02 1.13 16 35 H 0.06 2.68 7.95 -2.38 -0.02 2.66 16 36 H 0.01 0.43 7.91 -2.39 -0.02 0.42 16 Total: -1.00 -66.82 283.88 -0.84 -67.66 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -0.40 Total: 14.61 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 3.36 Total: -29.82 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -5.85 Total: -105.93 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -66.82 -0.84 -67.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708867175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.841 kcal (2) G-P(sol) polarization free energy of solvation -66.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds