Wall clock time and date at job start Mon Mar 30 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.62822 * 2 1 4 4 C 1.54314 * 110.70669 * 123.10358 * 2 1 3 5 5 N 1.47441 * 107.23281 * 140.66864 * 4 2 1 6 6 C 1.46898 * 111.00343 * 123.26194 * 5 4 2 7 7 C 1.53002 * 109.47585 * 69.86570 * 6 5 4 8 8 C 1.50696 * 109.46997 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00319 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99717 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.47838 * 108.57121 * 0.98774 * 5 4 2 17 17 C 1.54910 * 104.79240 * 335.90632 * 16 5 4 18 18 H 1.09004 * 111.02374 * 278.96019 * 17 16 5 19 19 C 1.53004 * 110.98911 * 155.15853 * 17 16 5 20 20 N 1.46906 * 109.46830 * 72.73387 * 19 17 16 21 21 H 1.08997 * 109.46752 * 298.34900 * 1 2 3 22 22 H 1.09001 * 109.47274 * 58.34971 * 1 2 3 23 23 H 1.08999 * 109.47275 * 178.34892 * 1 2 3 24 24 H 1.09003 * 109.88923 * 21.25945 * 4 2 1 25 25 H 1.08998 * 109.88992 * 260.07144 * 4 2 1 26 26 H 1.09005 * 109.46746 * 309.86952 * 6 5 4 27 27 H 1.09002 * 109.47495 * 189.87071 * 6 5 4 28 28 H 1.09005 * 109.46767 * 60.00394 * 7 6 5 29 29 H 1.09002 * 109.47113 * 300.00734 * 7 6 5 30 30 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 31 31 H 1.08999 * 110.37637 * 94.73389 * 16 5 4 32 32 H 1.09000 * 110.37636 * 217.08159 * 16 5 4 33 33 H 1.09002 * 109.46974 * 192.73244 * 19 17 16 34 34 H 1.08999 * 109.47230 * 312.73618 * 19 17 16 35 35 H 1.00900 * 110.99787 * 56.04797 * 20 19 17 36 36 H 1.00899 * 110.99980 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0202 0.0000 4 6 2.0756 -0.7884 1.2092 5 7 3.2490 -1.5488 0.7413 6 6 4.4406 -1.2190 1.5345 7 6 4.2851 -1.7841 2.9478 8 6 5.5073 -1.4452 3.7616 9 1 6.3142 -0.8826 3.3156 10 6 5.5956 -1.8534 5.0757 11 7 6.6620 -1.5571 5.7861 12 14 4.2004 -2.8270 5.8469 13 1 3.2252 -1.8916 6.4627 14 1 3.5210 -3.6322 4.8003 15 1 4.7459 -3.7314 6.8908 16 6 3.4651 -1.2477 -0.6898 17 6 2.0785 -0.7967 -1.2129 18 1 1.4456 -1.6561 -1.4342 19 6 2.2227 0.1048 -2.4408 20 7 2.6287 -0.7047 -3.5975 21 1 -0.3633 0.4880 0.9044 22 1 -0.3634 0.5392 -0.8748 23 1 -0.3634 -1.0272 -0.0296 24 1 1.3132 -1.4736 1.5797 25 1 2.3721 -0.0979 1.9988 26 1 4.5540 -0.1361 1.5867 27 1 5.3222 -1.6544 1.0641 28 1 4.1717 -2.8670 2.8957 29 1 3.4035 -1.3487 3.4183 30 1 6.7239 -1.8440 6.7106 31 1 4.1931 -0.4444 -0.8029 32 1 3.7984 -2.1403 -1.2193 33 1 1.2681 0.5868 -2.6517 34 1 2.9788 0.8654 -2.2463 35 1 1.9764 -1.4575 -3.7588 36 1 2.7303 -0.1319 -4.4219 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708872790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:17 Heat of formation + Delta-G solvation = -37.237427 kcal Electronic energy + Delta-G solvation = -14434.829987 eV Core-core repulsion = 12144.902326 eV Total energy + Delta-G solvation = -2289.927662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44871 -36.51541 -35.08293 -33.95038 -31.92273 -29.98021 -27.37566 -26.29403 -24.11605 -22.45372 -21.52716 -20.68142 -19.01247 -17.04059 -16.89147 -16.41251 -15.70021 -15.52885 -15.21490 -14.98993 -14.57517 -14.42628 -13.94060 -13.60114 -13.32413 -13.20127 -13.00528 -12.55131 -12.42091 -11.88009 -11.77400 -11.66876 -11.64099 -11.45768 -11.42333 -11.36288 -10.77907 -9.54483 -9.17898 -8.31736 -6.36266 1.34259 1.37084 1.50839 2.35540 3.03619 3.10814 3.46594 3.67923 3.77216 4.07996 4.28143 4.35520 4.42346 4.47637 4.51525 4.62798 4.71261 4.71946 4.79470 4.93434 4.96215 5.06905 5.08231 5.23611 5.26460 5.31031 5.44432 5.50042 5.60914 6.12199 6.20062 6.26859 6.30525 6.66106 6.70875 7.28720 8.85123 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047751 B = 0.006598 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.236891 B = 4242.534333 C = 4589.339569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 H 0.073 0.927 4 C 0.041 3.959 5 N -0.546 5.546 6 C 0.080 3.920 7 C 0.003 3.997 8 C -0.536 4.536 9 H 0.031 0.969 10 C 0.008 3.992 11 N -0.950 5.950 12 Si 0.952 3.048 13 H -0.264 1.264 14 H -0.251 1.251 15 H -0.280 1.280 16 C 0.057 3.943 17 C -0.078 4.078 18 H 0.087 0.913 19 C 0.079 3.921 20 N -0.859 5.859 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.017 0.983 27 H 0.055 0.945 28 H 0.019 0.981 29 H 0.016 0.984 30 H 0.268 0.732 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.347 0.653 36 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.256 2.695 -16.511 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.124 4.124 3 H 0.092 0.908 4 C -0.087 4.087 5 N -0.270 5.270 6 C -0.048 4.048 7 C -0.035 4.035 8 C -0.574 4.574 9 H 0.049 0.951 10 C -0.189 4.189 11 N -0.590 5.590 12 Si 0.775 3.225 13 H -0.189 1.189 14 H -0.174 1.174 15 H -0.206 1.206 16 C -0.070 4.070 17 C -0.098 4.098 18 H 0.105 0.895 19 C -0.052 4.052 20 N -0.391 5.391 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.161 0.839 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.593 1.988 -15.859 21.642 hybrid contribution -0.409 0.885 0.380 1.047 sum -15.001 2.873 -15.479 21.746 Atomic orbital electron populations 1.21689 0.92442 1.02408 1.02453 1.22376 0.97694 0.98653 0.93664 0.90808 1.22973 0.92994 0.95501 0.97219 1.63581 1.04211 1.55936 1.03314 1.21953 0.91967 0.96633 0.94228 1.19401 0.94973 0.96471 0.92623 1.21418 1.03791 1.35211 0.96995 0.95074 1.25973 0.98592 0.96712 0.97616 1.70064 1.30680 1.48498 1.09799 0.85628 0.79210 0.79241 0.78415 1.18924 1.17433 1.20595 1.22967 0.97313 0.99570 0.87167 1.22306 0.95261 0.98279 0.93928 0.89462 1.21644 0.99058 0.94655 0.89858 1.58625 1.56518 1.15960 1.07959 0.92302 0.91077 0.92186 0.90672 0.94150 0.96434 0.92637 0.96259 0.96608 0.92350 0.94824 0.90759 0.93648 0.91997 0.83932 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.13 71.98 0.66 -1.64 16 2 C -0.10 -2.39 3.01 -9.61 -0.03 -2.41 16 3 H 0.07 1.70 8.04 -2.38 -0.02 1.68 16 4 C 0.04 1.28 5.80 86.65 0.50 1.79 16 5 N -0.55 -19.72 5.16 -885.56 -4.57 -24.29 16 6 C 0.08 3.50 4.47 86.30 0.39 3.89 16 7 C 0.00 0.16 4.07 29.85 0.12 0.28 16 8 C -0.54 -32.43 9.66 25.60 0.25 -32.18 16 9 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 10 C 0.01 0.49 5.47 84.66 0.46 0.95 16 11 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 12 Si 0.95 46.00 27.47 68.60 1.88 47.88 16 13 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.25 -11.55 6.54 99.48 0.65 -10.90 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 16 C 0.06 1.70 6.10 86.78 0.53 2.23 16 17 C -0.08 -1.72 2.63 -9.41 -0.02 -1.75 16 18 H 0.09 1.84 8.04 -2.39 -0.02 1.82 16 19 C 0.08 1.38 6.24 86.30 0.54 1.92 16 20 N -0.86 -13.58 9.57 -186.70 -1.79 -15.37 16 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 24 H 0.07 2.28 7.82 -2.39 -0.02 2.27 16 25 H 0.04 1.41 6.91 -2.39 -0.02 1.39 16 26 H 0.02 0.78 7.96 -2.38 -0.02 0.76 16 27 H 0.06 2.48 8.07 -2.39 -0.02 2.47 16 28 H 0.02 0.98 7.20 -2.38 -0.02 0.97 16 29 H 0.02 0.77 6.57 -2.39 -0.02 0.76 16 30 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.03 1.05 7.58 -2.39 -0.02 1.03 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.22 7.96 -2.39 -0.02 1.20 16 35 H 0.35 4.59 8.99 -89.69 -0.81 3.79 16 36 H 0.35 4.20 9.08 -89.69 -0.81 3.39 16 Total: -1.00 -68.28 284.72 -1.41 -69.69 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -0.63 Total: 9.80 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 3.39 Total: -26.93 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -6.05 Total: -100.44 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.88 Total: 47.88 kcal Total: -68.28 -1.41 -69.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708872790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.454 kcal (2) G-P(sol) polarization free energy of solvation -68.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds