Wall clock time and date at job start Mon Mar 30 2020 02:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.28502 * 2 1 4 4 C 1.54378 * 110.41031 * 122.17752 * 2 1 3 5 5 N 1.48556 * 104.59344 * 142.79271 * 4 2 1 6 6 C 1.46898 * 111.00242 * 200.96111 * 5 4 2 7 7 C 1.53003 * 109.47063 * 285.42165 * 6 5 4 8 8 C 1.50703 * 109.47038 * 179.97438 * 7 6 5 9 9 H 1.08006 * 120.00159 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00120 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00089 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99938 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 269.99556 * 12 10 8 14 14 H 1.48503 * 109.47261 * 149.99737 * 12 10 8 15 15 H 1.48500 * 109.47454 * 29.99730 * 12 10 8 16 16 C 1.48559 * 104.22633 * 320.52364 * 5 4 2 17 17 C 1.54256 * 110.32625 * 237.87100 * 2 1 3 18 18 H 1.09005 * 110.32298 * 122.10674 * 17 2 1 19 19 C 1.53001 * 110.32405 * 359.89392 * 17 2 1 20 20 N 1.46901 * 109.47106 * 177.90881 * 19 17 2 21 21 H 1.09006 * 109.47083 * 182.12873 * 1 2 3 22 22 H 1.08999 * 109.47316 * 302.12949 * 1 2 3 23 23 H 1.09000 * 109.46955 * 62.13410 * 1 2 3 24 24 H 1.08999 * 110.40679 * 24.01977 * 4 2 1 25 25 H 1.08996 * 110.41685 * 261.57909 * 4 2 1 26 26 H 1.08996 * 109.47442 * 165.42286 * 6 5 4 27 27 H 1.08996 * 109.46826 * 45.42284 * 6 5 4 28 28 H 1.09003 * 109.46825 * 60.00196 * 7 6 5 29 29 H 1.08996 * 109.47396 * 299.99770 * 7 6 5 30 30 H 0.96998 * 119.99255 * 0.02562 * 11 10 8 31 31 H 1.08994 * 110.41412 * 158.26228 * 16 5 4 32 32 H 1.08998 * 110.40771 * 280.58451 * 16 5 4 33 33 H 1.08996 * 109.47512 * 297.91398 * 19 17 2 34 34 H 1.09001 * 109.46969 * 57.91251 * 19 17 2 35 35 H 1.00896 * 110.99873 * 56.04985 * 20 19 17 36 36 H 1.00900 * 110.99932 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0225 0.0000 4 6 2.0684 -0.7705 1.2246 5 7 3.2720 -1.4805 0.7206 6 6 3.6119 -2.6191 1.5843 7 6 4.2414 -2.1056 2.8809 8 6 4.5895 -3.2736 3.7673 9 1 4.3821 -4.2814 3.4389 10 6 5.1717 -3.0557 4.9979 11 7 5.4238 -1.8285 5.3981 12 14 5.6039 -4.5035 6.0962 13 1 4.4497 -4.8196 6.9757 14 1 6.7821 -4.1572 6.9312 15 1 5.9234 -5.6850 5.2552 16 6 2.8829 -1.9400 -0.6375 17 6 2.0658 -0.7693 -1.2250 18 1 2.7068 -0.1245 -1.8263 19 6 0.9050 -1.3016 -2.0676 20 7 1.4351 -1.9869 -3.2540 21 1 -0.3633 -1.0270 0.0382 22 1 -0.3634 0.5465 0.8703 23 1 -0.3633 0.4803 -0.9085 24 1 1.3264 -1.4855 1.5801 25 1 2.3412 -0.0772 2.0202 26 1 4.3201 -3.2676 1.0687 27 1 2.7075 -3.1811 1.8172 28 1 3.5331 -1.4570 3.3966 29 1 5.1457 -1.5435 2.6481 30 1 5.1997 -1.0768 4.8275 31 1 3.7690 -2.1272 -1.2439 32 1 2.2701 -2.8391 -0.5735 33 1 0.3175 -2.0029 -1.4751 34 1 0.2722 -0.4710 -2.3803 35 1 2.0759 -2.7207 -2.9915 36 1 0.6873 -2.3475 -3.8275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708872792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:20 Heat of formation + Delta-G solvation = -16.814157 kcal Electronic energy + Delta-G solvation = -14487.488697 eV Core-core repulsion = 12198.446655 eV Total energy + Delta-G solvation = -2289.042042 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.42282 -35.35666 -33.59316 -32.53553 -29.84240 -28.33501 -25.90091 -24.53220 -23.17379 -21.48598 -20.24845 -18.83529 -16.75308 -16.30871 -15.94919 -14.86669 -14.39342 -14.33363 -13.74339 -13.70249 -12.95943 -12.72764 -12.56391 -12.24441 -12.03906 -11.83935 -11.46430 -10.97121 -10.77364 -10.59947 -10.45735 -10.35697 -10.12630 -9.95285 -9.69268 -8.82725 -8.54019 -8.28576 -7.96748 -6.33392 -4.01971 3.44363 3.48596 3.64329 4.33933 4.41979 4.59080 4.66519 4.85822 5.04959 5.24422 5.33797 5.44619 5.44918 5.54133 5.58388 5.68271 5.77864 5.93589 5.98847 6.07942 6.14131 6.16314 6.34610 6.39434 6.46694 6.83183 6.96394 7.24832 7.27083 7.31625 7.60323 7.73025 8.26810 8.49777 8.91893 9.70677 11.07861 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054415 B = 0.006001 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.440476 B = 4664.928324 C = 4927.572769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.041 3.959 5 N -0.511 5.511 6 C 0.060 3.940 7 C 0.018 3.982 8 C -0.604 4.604 9 H 0.047 0.953 10 C 0.016 3.984 11 N -0.913 5.913 12 Si 1.072 2.928 13 H -0.289 1.289 14 H -0.284 1.284 15 H -0.289 1.289 16 C 0.036 3.964 17 C -0.087 4.087 18 H 0.085 0.915 19 C 0.068 3.932 20 N -0.853 5.853 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.023 0.977 28 H 0.006 0.994 29 H 0.015 0.985 30 H 0.270 0.730 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.341 0.659 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 1.096 -13.344 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.097 0.903 4 C -0.088 4.088 5 N -0.235 5.235 6 C -0.067 4.067 7 C -0.020 4.020 8 C -0.643 4.643 9 H 0.065 0.935 10 C -0.188 4.188 11 N -0.549 5.549 12 Si 0.900 3.100 13 H -0.215 1.215 14 H -0.209 1.209 15 H -0.215 1.215 16 C -0.093 4.093 17 C -0.106 4.106 18 H 0.103 0.897 19 C -0.063 4.063 20 N -0.383 5.383 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.024 0.976 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.153 0.847 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.613 1.730 -12.068 14.927 hybrid contribution -1.852 -1.092 -1.015 2.377 sum -10.465 0.639 -13.083 16.765 Atomic orbital electron populations 1.21941 0.95211 1.01675 1.01572 1.21919 0.95079 0.99852 0.94394 0.90274 1.23154 0.91397 0.97459 0.96749 1.65454 1.31848 1.24583 1.01593 1.22337 0.98431 0.90720 0.95235 1.19151 0.95428 0.96810 0.90568 1.22046 1.44789 0.93194 1.04265 0.93504 1.25828 0.94156 1.01837 0.97007 1.70733 1.45277 0.98836 1.40070 0.83510 0.76801 0.74170 0.75487 1.21532 1.20937 1.21535 1.23132 0.98382 0.95561 0.92205 1.21948 0.96136 0.97064 0.95472 0.89689 1.22021 0.96092 0.97804 0.90349 1.58747 1.22092 1.36019 1.21418 0.92702 0.92600 0.92400 0.94179 0.90177 0.92065 0.95908 0.97589 0.96622 0.91956 0.90538 0.94915 0.95434 0.90738 0.84654 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 7.94 37.16 0.30 -1.29 16 2 C -0.09 -1.23 3.65 -89.24 -0.33 -1.56 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.04 0.69 5.46 -2.18 -0.01 0.68 16 5 N -0.51 -9.69 5.34 -229.98 -1.23 -10.92 16 6 C 0.06 1.33 4.77 -3.82 -0.02 1.31 16 7 C 0.02 0.48 4.40 -27.88 -0.12 0.36 16 8 C -0.60 -17.73 9.11 -34.44 -0.31 -18.05 16 9 H 0.05 1.35 7.74 -52.48 -0.41 0.94 16 10 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 11 N -0.91 -28.66 13.65 55.43 0.76 -27.90 16 12 Si 1.07 25.82 29.90 -169.99 -5.08 20.73 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.04 0.54 5.16 -2.18 -0.01 0.53 16 17 C -0.09 -1.12 3.31 -89.24 -0.30 -1.42 16 18 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 19 C 0.07 0.73 4.97 -3.82 -0.02 0.71 16 20 N -0.85 -8.45 9.62 -10.37 -0.10 -8.55 16 21 H 0.05 0.60 6.81 -51.93 -0.35 0.25 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.54 6.74 -51.93 -0.35 0.19 16 24 H 0.04 0.69 7.44 -51.93 -0.39 0.31 16 25 H 0.08 1.46 7.85 -51.93 -0.41 1.05 16 26 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 27 H 0.02 0.50 7.77 -51.93 -0.40 0.10 16 28 H 0.01 0.16 7.33 -51.93 -0.38 -0.22 16 29 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 30 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.03 0.49 7.66 -51.93 -0.40 0.09 16 33 H 0.03 0.30 6.84 -51.93 -0.36 -0.05 16 34 H 0.07 0.74 6.67 -51.93 -0.35 0.40 16 35 H 0.34 3.33 8.19 -39.29 -0.32 3.01 16 36 H 0.34 2.66 9.08 -39.29 -0.36 2.30 16 LS Contribution 280.06 15.07 4.22 4.22 Total: -1.00 -31.46 280.06 -8.44 -39.89 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.08 Total: 0.89 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -0.92 Total: -18.36 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.57 Total: -47.37 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.46 -8.44 -39.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708872792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.079 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds